liblaf-melon 0.2.4__tar.gz → 0.2.6__tar.gz

liblaf_melon-0.2.6/PKG-INFO

@@ -0,0 +1,154 @@
+Metadata-Version: 2.4
+Name: liblaf-melon
+Version: 0.2.6
+Summary: Add your description here
+Project-URL: Changelog, https://github.com/liblaf/melon/blob/main/CHANGELOG.md
+Project-URL: Documentation, https://liblaf.github.io/melon/
+Project-URL: Homepage, https://github.com/liblaf/melon
+Project-URL: Issue Tracker, https://github.com/liblaf/melon/issues
+Project-URL: Release Notes, https://github.com/liblaf/melon/releases
+Project-URL: Source Code, https://github.com/liblaf/melon
+Author-email: liblaf <30631553+liblaf@users.noreply.github.com>
+License-Expression: MIT
+License-File: LICENSE
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Operating System :: OS Independent
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Typing :: Typed
+Requires-Python: >=3.12
+Requires-Dist: attrs<26,>=25.3.0
+Requires-Dist: cyclopts<4,>=3.16.1
+Requires-Dist: einops<0.9,>=0.8.1
+Requires-Dist: glom<25,>=24.11.0
+Requires-Dist: jaxtyping<0.4,>=0.3.2
+Requires-Dist: lazy-loader<0.5,>=0.4
+Requires-Dist: liblaf-grapes<0.2,>=0.1.27
+Requires-Dist: loguru<0.8,>=0.7.3
+Requires-Dist: meshio<6,>=5.3.5
+Requires-Dist: networkx<4,>=3.4.2
+Requires-Dist: numpy
+Requires-Dist: polars<2,>=1.30.0
+Requires-Dist: pydantic<3,>=2.11.4
+Requires-Dist: pydicom<4,>=3.0.1
+Requires-Dist: pymeshfix<0.18,>=0.17.1
+Requires-Dist: pyvista<0.46,>=0.45.2
+Requires-Dist: rich<15,>=14.0.0
+Requires-Dist: scipy
+Requires-Dist: tinyobjloader==2.0.0rc13
+Requires-Dist: trimesh[easy]<5,>=4.6.10
+Description-Content-Type: text/markdown
+
+<div align="center" markdown><a name="readme-top"></a>
+
+<img src="https://raw.githubusercontent.com/microsoft/fluentui-emoji/main/assets/Melon/3D/melon_3d.png" style="height: 120px" />
+<img src="https://gw.alipayobjects.com/zos/kitchen/qJ3l3EPsdW/split.svg" style="height: 120px" />
+<img src="https://api.iconify.design/logos/python.svg" style="height: 120px; padding: 12px" />
+
+# Melon
+
+TODO: DESCRIPTION <br />
+[**Explore the docs »**](https://liblaf.github.io/melon/)
+
+[![PyPI - Downloads](https://img.shields.io/pypi/dm/liblaf-melon?logo=PyPI&label=Downloads)](https://pypi.org/project/liblaf-melon)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/liblaf-melon?logo=Python&label=Python)](https://pypi.org/project/liblaf-melon)
+[![PyPI - Version](https://img.shields.io/pypi/v/liblaf-melon?logo=PyPI&label=PyPI)](https://pypi.org/project/liblaf-melon)
+[![Codecov](https://img.shields.io/codecov/c/github/liblaf/melon?logo=Codecov&label=Coverage)](https://codecov.io/gh/liblaf/melon)
+[![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/liblaf/melon/test.yaml?logo=GitHub%20Actions&label=Test)](https://github.com/liblaf/melon/actions/workflows/test.yaml)
+<br />
+[![GitHub Contributors](https://img.shields.io/github/contributors/liblaf/melon?logo=GitHub&label=Contributors)](https://github.com/liblaf/melon/graphs/contributors)
+[![GitHub Forks](https://img.shields.io/github/forks/liblaf/melon)](https://github.com/liblaf/melon/forks)
+[![GitHub Repo Stars](https://img.shields.io/github/stars/liblaf/melon)](https://github.com/liblaf/melon/stargazers)
+[![GitHub Issues](https://img.shields.io/github/issues/liblaf/melon?logo=GitHub&label=Issues)](https://github.com/liblaf/melon/issues)
+[![GitHub License](https://img.shields.io/github/license/liblaf/melon?label=License)](https://github.com/liblaf/melon/blob/main/LICENSE)
+
+[Changelog](https://github.com/liblaf/melon/blob/main/CHANGELOG.md) · [Report Bug](https://github.com/liblaf/melon/issues) · [Request Feature](https://github.com/liblaf/melon/issues)
+
+![](https://raw.githubusercontent.com/andreasbm/readme/master/assets/lines/rainbow.png)
+
+</div>
+
+## ✨ Features
+
+- [x] ✨ **TODO:** FEATURES;
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 📦 Installation
+
+To install `liblaf-melon`, run the following command:
+
+```bash
+$ uv add liblaf-melon
+```
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## ⌨️ Local Development
+
+You can use Github Codespaces for online development:
+
+[![](https://github.com/codespaces/badge.svg)](https://codespaces.new/liblaf/melon)
+
+Or clone it for local development:
+
+```bash
+$ gh repo clone liblaf/melon
+$ cd melon
+$ just test
+```
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 🤝 Contributing
+
+Contributions of all types are more than welcome, if you are interested in contributing code, feel free to check out our GitHub [Issues](https://github.com/liblaf/melon/issues) to get stuck in to show us what you're made of.
+
+[![](https://img.shields.io/badge/%F0%9F%A4%AF%20PR%20WELCOME-%E2%86%92-ffcb47?labelColor=black&style=for-the-badge)](https://github.com/liblaf/melon/pulls)
+
+[![](https://contrib.rocks/image?repo=liblaf%2Fmelon)](https://github.com/liblaf/melon/graphs/contributors)
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 🔗 Links
+
+### More Projects
+
+- **[🍇 grapes](https://github.com/liblaf/grapes)** - Powerful Python utilities for logging, timing, and more, making development smoother!
+
+### Credits
+
+- **Python** - <https://www.python.org/>
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+---
+
+#### 📝 License
+
+Copyright © 2025 [liblaf](https://github.com/liblaf). <br />
+This project is [MIT](https://github.com/liblaf/melon/blob/main/LICENSE) licensed.

liblaf_melon-0.2.6/README.md

@@ -0,0 +1,109 @@
+<div align="center" markdown><a name="readme-top"></a>
+
+<img src="https://raw.githubusercontent.com/microsoft/fluentui-emoji/main/assets/Melon/3D/melon_3d.png" style="height: 120px" />
+<img src="https://gw.alipayobjects.com/zos/kitchen/qJ3l3EPsdW/split.svg" style="height: 120px" />
+<img src="https://api.iconify.design/logos/python.svg" style="height: 120px; padding: 12px" />
+
+# Melon
+
+TODO: DESCRIPTION <br />
+[**Explore the docs »**](https://liblaf.github.io/melon/)
+
+[![PyPI - Downloads](https://img.shields.io/pypi/dm/liblaf-melon?logo=PyPI&label=Downloads)](https://pypi.org/project/liblaf-melon)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/liblaf-melon?logo=Python&label=Python)](https://pypi.org/project/liblaf-melon)
+[![PyPI - Version](https://img.shields.io/pypi/v/liblaf-melon?logo=PyPI&label=PyPI)](https://pypi.org/project/liblaf-melon)
+[![Codecov](https://img.shields.io/codecov/c/github/liblaf/melon?logo=Codecov&label=Coverage)](https://codecov.io/gh/liblaf/melon)
+[![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/liblaf/melon/test.yaml?logo=GitHub%20Actions&label=Test)](https://github.com/liblaf/melon/actions/workflows/test.yaml)
+<br />
+[![GitHub Contributors](https://img.shields.io/github/contributors/liblaf/melon?logo=GitHub&label=Contributors)](https://github.com/liblaf/melon/graphs/contributors)
+[![GitHub Forks](https://img.shields.io/github/forks/liblaf/melon)](https://github.com/liblaf/melon/forks)
+[![GitHub Repo Stars](https://img.shields.io/github/stars/liblaf/melon)](https://github.com/liblaf/melon/stargazers)
+[![GitHub Issues](https://img.shields.io/github/issues/liblaf/melon?logo=GitHub&label=Issues)](https://github.com/liblaf/melon/issues)
+[![GitHub License](https://img.shields.io/github/license/liblaf/melon?label=License)](https://github.com/liblaf/melon/blob/main/LICENSE)
+
+[Changelog](https://github.com/liblaf/melon/blob/main/CHANGELOG.md) · [Report Bug](https://github.com/liblaf/melon/issues) · [Request Feature](https://github.com/liblaf/melon/issues)
+
+![](https://raw.githubusercontent.com/andreasbm/readme/master/assets/lines/rainbow.png)
+
+</div>
+
+## ✨ Features
+
+- [x] ✨ **TODO:** FEATURES;
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 📦 Installation
+
+To install `liblaf-melon`, run the following command:
+
+```bash
+$ uv add liblaf-melon
+```
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## ⌨️ Local Development
+
+You can use Github Codespaces for online development:
+
+[![](https://github.com/codespaces/badge.svg)](https://codespaces.new/liblaf/melon)
+
+Or clone it for local development:
+
+```bash
+$ gh repo clone liblaf/melon
+$ cd melon
+$ just test
+```
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 🤝 Contributing
+
+Contributions of all types are more than welcome, if you are interested in contributing code, feel free to check out our GitHub [Issues](https://github.com/liblaf/melon/issues) to get stuck in to show us what you're made of.
+
+[![](https://img.shields.io/badge/%F0%9F%A4%AF%20PR%20WELCOME-%E2%86%92-ffcb47?labelColor=black&style=for-the-badge)](https://github.com/liblaf/melon/pulls)
+
+[![](https://contrib.rocks/image?repo=liblaf%2Fmelon)](https://github.com/liblaf/melon/graphs/contributors)
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+## 🔗 Links
+
+### More Projects
+
+- **[🍇 grapes](https://github.com/liblaf/grapes)** - Powerful Python utilities for logging, timing, and more, making development smoother!
+
+### Credits
+
+- **Python** - <https://www.python.org/>
+
+<div align="right" markdown>
+
+[![](https://img.shields.io/badge/-BACK_TO_TOP-black?style=flat-square)](#readme-top)
+
+</div>
+
+---
+
+#### 📝 License
+
+Copyright © 2025 [liblaf](https://github.com/liblaf). <br />
+This project is [MIT](https://github.com/liblaf/melon/blob/main/LICENSE) licensed.

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/pyproject.toml

@@ -7,11 +7,10 @@ requires = ["hatch-vcs", "hatchling"]
 
 [dependency-groups]
 build = ["check-wheel-contents", "hatch", "twine"]
-dev = ["icecream"]
+dev = ["icecream", "liblaf-cherries>=0.1.2,<0.2", "pygltflib"]
 docs = [
   "gitpython",
   "mdx-truly-sane-lists",
-  "mike",
   "mkdocs",
   "mkdocs-autorefs",
   "mkdocs-gen-files",
@@ -51,40 +50,33 @@ classifiers = [
 ]
 dependencies = [
   "attrs>=25.3.0,<26",
+  "cyclopts>=3.16.1,<4",
   "einops>=0.8.1,<0.9",
-  "fast-simplification>=0.1.11,<0.2",
   "glom>=24.11.0,<25",
   "jaxtyping>=0.3.2,<0.4",
   "lazy-loader>=0.4,<0.5",
-  "liblaf-cherries>=0.0.13,<0.0.14",
-  "liblaf-grapes>=0.1.23,<0.2",
+  "liblaf-grapes>=0.1.27,<0.2",
   "loguru>=0.7.3,<0.8",
-  "matplotlib>=3.10.3,<4",
   "meshio>=5.3.5,<6",
-  "numpy>=2.2.5,<3",
-  "pandas>=2.2.3,<3",
-  "polars>=1.29.0,<2",
-  "pooch>=1.8.2,<2",
-  "pyacvd>=0.3.2,<0.4",
+  "networkx>=3.4.2,<4",
+  "numpy",
+  "polars>=1.30.0,<2",
   "pydantic>=2.11.4,<3",
   "pydicom>=3.0.1,<4",
-  "pygltflib>=1.16.4,<2",
   "pymeshfix>=0.17.1,<0.18",
-  "pyvista>=0.45.1,<0.46",
+  "pyvista>=0.45.2,<0.46",
   "rich>=14.0.0,<15",
-  "scipy>=1.15.2,<2",
-  "seaborn>=0.13.2,<0.14",
-  "tinyobjloader>=2.0.0rc13,<3",
-  "trimesh[easy]>=4.6.8,<5",
-  "typer>=0.15.3,<0.16",
+  "scipy",
+  "tinyobjloader==2.0.0rc13",
+  "trimesh[easy]>=4.6.10,<5",
 ]
 description = "Add your description here"
 dynamic = ["version"]
 keywords = []
 license = "MIT"
 name = "liblaf-melon"
-readme = "docs/README.md"
-requires-python = ">=3.12,<3.13"
+readme = "README.md"
+requires-python = ">=3.12"
 
 [project.scripts]
 melon = "liblaf.melon.cli:main"
@@ -127,9 +119,6 @@ platforms = ["linux-64"]
 [tool.pixi.pypi-dependencies]
 "liblaf-melon" = { editable = true, path = "." }
 
-[tool.pixi.pypi-options]
-index-url = "https://mirrors.cernet.edu.cn/pypi/web/simple"
-
 [tool.pixi.system-requirements]
 cuda = "12"
 libc = { family = "glibc", version = "2.41" }

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/__init__.pyi

@@ -18,19 +18,27 @@ from .io import (
 )
 from .plugin import annotate_landmarks, fast_wrapping, mesh_fix, tetwild
 from .proximity import (
-    Nearest,
+    NearestAlgorithm,
+    NearestAlgorithmPrepared,
     NearestPoint,
+    NearestPointOnSurface,
+    NearestPointOnSurfacePrepared,
+    NearestPointOnSurfaceResult,
     NearestPointPrepared,
-    NearestPrepared,
+    NearestPointResult,
     NearestResult,
     nearest,
 )
 
 __all__ = [
-    "Nearest",
+    "NearestAlgorithm",
+    "NearestAlgorithmPrepared",
     "NearestPoint",
+    "NearestPointOnSurface",
+    "NearestPointOnSurfacePrepared",
+    "NearestPointOnSurfaceResult",
     "NearestPointPrepared",
-    "NearestPrepared",
+    "NearestPointResult",
     "NearestResult",
     "PVDWriter",
     "SeriesWriter",

liblaf_melon-0.2.6/src/liblaf/melon/__main__.py

@@ -0,0 +1,4 @@
+from .cli import main
+
+if __name__ == "__main__":
+    main()

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/_version.py

@@ -17,5 +17,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.2.4'
-__version_tuple__ = version_tuple = (0, 2, 4)
+__version__ = version = '0.2.6'
+__version_tuple__ = version_tuple = (0, 2, 6)

liblaf_melon-0.2.6/src/liblaf/melon/cli/__init__.pyi

@@ -0,0 +1,3 @@
+from ._app import app, main
+
+__all__ = ["app", "main"]

liblaf_melon-0.2.6/src/liblaf/melon/cli/__main__.py

@@ -0,0 +1,4 @@
+from ._app import main
+
+if __name__ == "__main__":
+    main()

liblaf_melon-0.2.6/src/liblaf/melon/cli/_app.py

@@ -0,0 +1,25 @@
+from typing import Annotated
+
+import cyclopts
+
+from liblaf import grapes
+from liblaf.melon import _version
+
+from . import _info
+
+app = cyclopts.App(name="melon", version=_version.__version__)
+
+
+@app.meta.default
+def init(
+    *tokens: Annotated[str, cyclopts.Parameter(show=False, allow_leading_hyphen=True)],
+) -> None:
+    grapes.init_logging()
+    app(tokens)
+
+
+app.command(_info.info)
+
+
+def main() -> None:
+    app.meta()

liblaf_melon-0.2.6/src/liblaf/melon/cli/_info.py

@@ -0,0 +1,43 @@
+from collections.abc import Container
+from pathlib import Path
+
+import pyvista as pv
+import rich.pretty
+
+from liblaf.melon import io
+
+POLY_DATA_SUFFIXES: Container[str] = {".obj", ".off", ".ply", ".stl", ".vtp"}
+UNSTRUCTURED_GRID_SUFFIXES: Container[str] = {".msh", ".vtu"}
+
+
+def info(
+    path: Path,
+    /,
+    *,
+    point_data: bool = True,
+    cell_data: bool = True,
+    field_data: bool = True,
+    field_data_values: bool = False,
+    user_dict: bool = True,
+) -> None:
+    if path.suffix in POLY_DATA_SUFFIXES:
+        mesh: pv.PolyData = io.load_poly_data(path)
+    elif path.suffix in UNSTRUCTURED_GRID_SUFFIXES:
+        mesh: pv.UnstructuredGrid = io.load_unstructured_grid(path)
+    else:
+        msg: str = f"Unsupported file format: {path.suffix}"
+        raise ValueError(msg)
+    rich.pretty.pprint(mesh)
+    if point_data:
+        rich.pretty.pprint(mesh.point_data)
+    if cell_data:
+        rich.pretty.pprint(mesh.cell_data)
+    if field_data:
+        rich.pretty.pprint(mesh.field_data)
+    if field_data_values:
+        for name, data in mesh.field_data.items():
+            rich.print(f"{name}: ", end="")
+            rich.pretty.pprint(data)
+    if user_dict:
+        rich.print("User Dict: ", end="")
+        rich.pretty.pprint(mesh.user_dict)

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/abc/_reader.py

@@ -49,7 +49,7 @@ class ReaderDispatcher[T]:
         for reader in self.readers:
             if reader.match_path(path):
                 data: T = reader.load(path, **kwargs)
-                logger.debug('Loaded {} from "{}".', type(data), path)
+                logger.opt(depth=2).debug('Loaded {} from "{}".', type(data), path)
                 return data
         raise UnsupportedReaderError(self.dtype, path)
 

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/abc/_writer.py

@@ -54,6 +54,6 @@ class WriterDispatcher:
             if writer.match_data(data) and writer.match_path(path):
                 Path(path).parent.mkdir(parents=True, exist_ok=True)
                 writer.save(path, data, **kwargs)
-                logger.debug('Saved {} to "{}".', type(data), path)
+                logger.opt(depth=2).debug('Saved {} to "{}".', type(data), path)
                 return
         raise UnsupportedWriterError(data, path)

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/paraview/_series_writer.py

@@ -111,7 +111,7 @@ class SeriesWriter(Sequence[File], contextlib.AbstractContextManager):
         self.save()
 
     def save(self) -> None:
-        grapes.save_json(self.file, self.series.model_dump(by_alias=True))
+        grapes.save(self.file, self.series.model_dump(by_alias=True))
 
     def start(self) -> None:
         pass

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/pyvista/point_set/convert/_convert.py

@@ -4,7 +4,9 @@ from liblaf.melon.io.abc import ConverterDispatcher
 
 from ._array import ArrayToPointSet
 from ._poly_data import PolyDataToPointSet
+from ._trimesh import TrimeshToPointSet
 
 as_point_set = ConverterDispatcher(pv.PointSet)
 as_point_set.register(ArrayToPointSet())
 as_point_set.register(PolyDataToPointSet())
+as_point_set.register(TrimeshToPointSet())

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/pyvista/point_set/convert/_poly_data.py

@@ -13,5 +13,9 @@ class PolyDataToPointSet(AbstractConverter):
 
     @override
     def convert(self, data: pv.PolyData, /, **kwargs) -> pv.PointSet:
+        point_normals: bool = kwargs.pop("point_normals", False)
         data.active_scalars_name = None
-        return data.cast_to_pointset(**kwargs)
+        result: pv.PointSet = data.cast_to_pointset(**kwargs)
+        if point_normals:
+            result.point_data["Normals"] = data.point_normals
+        return result

liblaf_melon-0.2.6/src/liblaf/melon/io/pyvista/point_set/convert/_trimesh.py

@@ -0,0 +1,21 @@
+from typing import Any, override
+
+import pyvista as pv
+import trimesh as tm
+
+from liblaf.melon import utils
+from liblaf.melon.io.abc import AbstractConverter
+
+
+class TrimeshToPointSet(AbstractConverter):
+    @override
+    def match_from(self, data: Any, /) -> bool:
+        return utils.is_trimesh(data)
+
+    @override
+    def convert(self, data: tm.Trimesh, /, **kwargs) -> pv.PointSet:
+        point_normals: bool = kwargs.pop("point_normals", False)
+        result: pv.PointSet = pv.PointSet(data.vertices)
+        if point_normals:
+            result.point_data["Normals"] = data.vertex_normals
+        return result

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/pyvista/poly_data/reader/_obj.py

@@ -9,7 +9,7 @@ from liblaf.melon.typed import PathLike
 
 class ObjReader(AbstractReader):
     extensions: Container[str] = {".obj"}
-    precedence: int = 1
+    precedence: int = 1  # prefer over pyvista.read
 
     @override
     def load(self, path: PathLike, /, **kwargs) -> pv.PolyData:

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/wrap/landmarks/_reader.py

@@ -11,5 +11,5 @@ from ._utils import get_landmarks_path
 
 def load_landmarks(path: str | os.PathLike[str]) -> Float[np.ndarray, "N 3"]:
     path: Path = get_landmarks_path(path)
-    data: list[dict[str, float]] = grapes.load_json(path)
+    data: list[dict[str, float]] = grapes.load(path)
     return np.asarray([[p["x"], p["y"], p["z"]] for p in data])

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/wrap/landmarks/_writer.py

@@ -16,4 +16,4 @@ def save_landmarks(
     path: Path = get_landmarks_path(path)
     points: Float[np.ndarray, "N 3"] = np.asarray(points)
     data: list[dict[str, float]] = [{"x": p[0], "y": p[1], "z": p[2]} for p in points]
-    grapes.save_json(path, data)
+    grapes.save(path, data)

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/wrap/polygons/_reader.py

@@ -11,5 +11,5 @@ from ._utils import get_polygons_path
 
 def load_polygons(path: PathLike) -> Integer[np.ndarray, " N"]:
     path: Path = get_polygons_path(path)
-    data: list[int] = grapes.load_json(path)
+    data: list[int] = grapes.load(path)
     return np.asarray(data)

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/io/wrap/polygons/_writer.py

@@ -15,4 +15,4 @@ def save_polygons(
 ) -> None:
     path: Path = get_polygons_path(path)
     polygons = np.asarray(polygons)
-    grapes.save_json(path, polygons.tolist())
+    grapes.save(path, polygons.tolist())

{liblaf_melon-0.2.4 → liblaf_melon-0.2.6}/src/liblaf/melon/plugin/_mesh_fix.py

@@ -4,6 +4,7 @@ from typing import Any
 import pyvista as pv
 
 from liblaf import grapes
+from liblaf.melon import io, triangle
 
 
 def mesh_fix(
@@ -15,19 +16,21 @@ def mesh_fix(
     remove_smallest_components: bool = False,
 ) -> pv.PolyData:
     if grapes.has_module("pymeshfix"):
-        mesh: pv.PolyData = _pymeshfix(
+        result: pv.PolyData = _pymeshfix(
             mesh,
             verbose=verbose,
             joincomp=joincomp,
             remove_smallest_components=remove_smallest_components,
         )
     elif shutil.which("MeshFix"):
-        mesh: pv.PolyData = _mesh_fix_exe(mesh, verbose=verbose)
+        result: pv.PolyData = _mesh_fix_exe(mesh, verbose=verbose)
     else:
         raise NotImplementedError
     if check:
-        raise NotImplementedError
-    return mesh
+        assert triangle.is_volume(result)
+    mesh: pv.PolyData = io.as_poly_data(mesh)
+    result.field_data.update(mesh.field_data)
+    return result
 
 
 def _pymeshfix(
@@ -39,7 +42,7 @@ def _pymeshfix(
 ) -> pv.PolyData:
     with grapes.optional_imports():
         import pymeshfix
-
+    mesh: pv.PolyData = io.as_poly_data(mesh)
     fix = pymeshfix.MeshFix(mesh)
     fix.repair(
         verbose=verbose,

liblaf_melon-0.2.6/src/liblaf/melon/proximity/__init__.pyi

@@ -0,0 +1,21 @@
+from ._abc import NearestAlgorithm, NearestAlgorithmPrepared, NearestResult
+from ._nearest import nearest
+from ._nearest_point import NearestPoint, NearestPointPrepared, NearestPointResult
+from ._nearest_point_on_surface import (
+    NearestPointOnSurface,
+    NearestPointOnSurfacePrepared,
+    NearestPointOnSurfaceResult,
+)
+
+__all__ = [
+    "NearestAlgorithm",
+    "NearestAlgorithmPrepared",
+    "NearestPoint",
+    "NearestPointOnSurface",
+    "NearestPointOnSurfacePrepared",
+    "NearestPointOnSurfaceResult",
+    "NearestPointPrepared",
+    "NearestPointResult",
+    "NearestResult",
+    "nearest",
+]