liblaf-melon 0.1.0__tar.gz

liblaf_melon-0.1.0/.cspell.json

@@ -0,0 +1,68 @@
+{
+  "$schema": "https://raw.githubusercontent.com/streetsidesoftware/cspell/main/packages/cspell-types/cspell.schema.json",
+  "version": "0.2",
+  "language": "en",
+  "words": [
+    "asyncio",
+    "cuda",
+    "cython",
+    "dcmread",
+    "dicom",
+    "dmypy",
+    "getattr",
+    "hynek",
+    "ipynb",
+    "ipython",
+    "isdtype",
+    "jaxlib",
+    "jaxtyping",
+    "libc",
+    "liblaf",
+    "meshio",
+    "mkdocs",
+    "mkdocstrings",
+    "mypy",
+    "ndarray",
+    "numpy",
+    "pipenv",
+    "pixi",
+    "pyacvd",
+    "pybuilder",
+    "pycache",
+    "pydantic",
+    "pydicom",
+    "pydocstyle",
+    "pyenv",
+    "pyflow",
+    "pyinstaller",
+    "pymdownx",
+    "pymeshfix",
+    "pypa",
+    "pypackages",
+    "pypi",
+    "pyplot",
+    "pyproject",
+    "pyrightconfig",
+    "pytest",
+    "pytetwild",
+    "pytype",
+    "pyvista",
+    "scipy",
+    "scrapy",
+    "sdist",
+    "stefanzweifel",
+    "trimesh",
+    "typer",
+    "ubelt",
+    "vecdot",
+    "venv"
+  ],
+  "ignorePaths": [
+    "**/.cspell.*",
+    "**/.git",
+    "**/.vscode",
+    "**/*-lock.*",
+    "**/*.lock*"
+  ],
+  "allowCompoundWords": true
+}

liblaf_melon-0.1.0/.envrc

@@ -0,0 +1,9 @@
+#!/bin/bash
+watch_file "pyproject.toml" "pixi.toml" "pixi.lock"
+if [[ -t 2 ]]; then
+  export PIXI_COLOR="always"
+else
+  export PIXI_COLOR="auto"
+fi
+eval "$(pixi shell-hook)"
+unset PIXI_COLOR

liblaf_melon-0.1.0/.github/copier/.copier-answers.python.yaml

@@ -0,0 +1,12 @@
+# This file is @generated by <https://github.com/liblaf/copier-python>.
+# DO NOT EDIT!
+# prettier-ignore
+_commit: c4dd786
+_src_path: gh:liblaf/copier-python
+author: liblaf
+email: 30631553+liblaf@users.noreply.github.com
+license: MIT
+name: liblaf-melon
+owner: liblaf
+package_manager: pixi
+repo: melon

liblaf_melon-0.1.0/.github/copier/.copier-answers.release.yaml

@@ -0,0 +1,6 @@
+# This file is @generated by <https://github.com/liblaf/copier-release>.
+# DO NOT EDIT!
+# prettier-ignore
+_commit: a11a632
+_src_path: gh:liblaf/copier-release
+release_type: python

liblaf_melon-0.1.0/.github/copier/.copier-answers.shared.yaml

@@ -0,0 +1,8 @@
+# This file is @generated by <https://github.com/liblaf/copier-shared>.
+# DO NOT EDIT!
+# prettier-ignore
+_commit: f1d9c33
+_src_path: gh:liblaf/copier-shared
+copyright_holder: liblaf
+license: MIT
+owner: liblaf

liblaf_melon-0.1.0/.github/copier/mkdocs.yaml

@@ -0,0 +1,143 @@
+# This file is @generated by <https://github.com/liblaf/copier-python>.
+# DO NOT EDIT!
+# vim: syntax=yaml
+# yaml-language-server: $schema=https://squidfunk.github.io/mkdocs-material/schema.json
+
+site_name: "liblaf-melon"
+site_url:
+  !ENV [
+    READTHEDOCS_CANONICAL_URL,
+    SITE_URL,
+    "https://liblaf.github.io/melon/",
+  ]
+site_author: "liblaf"
+repo_name: "liblaf/melon"
+repo_url: "https://github.com/liblaf/melon"
+edit_uri: blob/main/docs/
+
+extra_css:
+  # - https://raw.githubusercontent.com/liblaf/copier-python/refs/heads/main/css/fonts.css
+  # - https://raw.githubusercontent.com/liblaf/copier-python/refs/heads/main/css/mkdocstrings/material.css
+  # - https://raw.githubusercontent.com/liblaf/copier-python/refs/heads/main/css/mkdocstrings/syntax-highlight-in-signatures.css
+  # I don't know why, but external CSS does not work.
+  - css/fonts.css
+  - css/mkdocstrings/material.css
+  - css/mkdocstrings/syntax-highlight-in-signatures.css
+
+theme:
+  name: material
+  features:
+    - announce.dismiss
+    - content.action.edit
+    - content.action.view
+    - content.code.annotate
+    - content.code.copy
+    - content.code.select
+    - content.footnote.tooltips
+    - content.tabs.link
+    - content.tooltips
+    # - header.autohide
+    # - navigation.expand
+    # - navigation.footer
+    # - navigation.indexes
+    - navigation.instant
+    - navigation.instant.prefetch
+    - navigation.instant.progress
+    - navigation.path
+    # - navigation.prune
+    - navigation.sections
+    - navigation.tabs
+    - navigation.tabs.sticky
+    - navigation.top
+    - navigation.tracking
+    - search.highlight
+    - search.share
+    - search.suggest
+    - toc.follow
+    # - toc.integrate
+  palette:
+    - media: (prefers-color-scheme)
+      toggle:
+        icon: material/brightness-auto
+        name: Auto
+    - scheme: default
+      primary: teal
+      accent: purple
+      media: "(prefers-color-scheme: light)"
+      toggle:
+        icon: material/weather-sunny
+        name: Light Mode
+    - scheme: slate
+      primary: black
+      accent: lime
+      media: "(prefers-color-scheme: dark)"
+      toggle:
+        icon: material/weather-night
+        name: Dark Mode
+
+plugins:
+  # Built-in plugins
+  # optimize: # sponsors only
+  search:
+  social:
+  # typeset: # sponsors only
+  # External plugins, schema provided by us
+  gen-files:
+    scripts:
+      - docs/scripts/gen-ref-pages.py
+  git-committers:
+    enabled: !ENV [READTHEDOCS, CI, false]
+    repository: "liblaf/melon"
+    branch: main
+  literate-nav:
+  section-index:
+  # External plugins, schema provided by our community
+  git-revision-date-localized:
+    enable_creation_date: true
+  mkdocstrings:
+    default_handler: python
+    enable_inventory: true
+    handlers:
+      python:
+        import:
+          - https://docs.python.org/3/objects.inv
+        options:
+          # General
+          # Headings
+          show_symbol_type_heading: true
+          show_symbol_type_toc: true
+          # Members
+          inherited_members: true
+          filters:
+            - "!^_[^_]"
+            - "!__all__"
+          summary: true
+          # Docstrings
+          docstring_style: google
+          docstring_options:
+            ignore_init_summary: true
+          docstring_section_style: list
+          merge_init_into_class: true
+          show_if_no_docstring: true
+          # Signatures
+          show_signature_annotations: true
+          separate_signature: true
+          signature_crossrefs: true
+  # External plugins, schema not provided
+  autorefs:
+
+markdown_extensions:
+  admonition:
+  md_in_html:
+  mdx_truly_sane_lists:
+  pymdownx.details:
+  pymdownx.snippets:
+  pymdownx.superfences:
+  pymdownx.tabbed:
+    alternate_style: true
+  toc:
+    permalink: ¤
+
+watch:
+  - docs/
+  - src/

liblaf_melon-0.1.0/.github/linters/.ruff.toml

@@ -0,0 +1,98 @@
+#:schema https://json.schemastore.org/ruff.json
+# This file is @generated by <https://github.com/liblaf/copier-python>.
+# DO NOT EDIT!
+
+builtins = ["ic"]
+fix = true
+show-fixes = true
+target-version = "py312"
+
+[format]
+docstring-code-format = true
+
+[lint]
+explicit-preview-rules = true
+ignore = [
+  "ANN002",
+  "ANN003",
+  "ANN401",
+  "COM812",
+  "D100",
+  "D101",
+  "D102",
+  "D103",
+  "D104",
+  "D105",
+  "D106",
+  "D107",
+  "E501",
+  "ERA001",
+  "FIX002",
+  "INP001",
+  "PLR0913",
+  "PLR2004",
+  "RET504",
+  "S101",
+  "S603",
+  "S607",
+  "T201",
+  "TC001",
+  "TC002",
+  "TC003",
+  "TD002",
+  "TD003",
+  "TD004",
+  "TD005",
+]
+select = ["ALL"]
+
+[lint.flake8-annotations]
+allow-star-arg-any = true
+
+[lint.flake8-import-conventions.aliases]
+"array_typing" = "at"
+"array_typing.jax" = "atj"
+"array_typing.numpy" = "atn"
+"array_typing.torch" = "att"
+"asyncio.subprocess" = "asp"
+"boltons" = "bt"
+"jax.numpy" = "jnp"
+"jax.typing" = "jxt"
+"matplotlib" = "mpl"
+"matplotlib.pyplot" = "plt"
+"numpy" = "np"
+"numpy.typing" = "npt"
+"open3d" = "o3d"
+"pandas" = "pd"
+"polars" = "pl"
+"pydantic_settings" = "ps"
+"pyvista" = "pv"
+"seaborn" = "sns"
+"subprocess" = "sp"
+"taichi" = "ti"
+"toolkit" = "tk"
+"toolkit.array" = "at"
+"toolkit.array.jax" = "tj"
+"toolkit.array.numpy" = "tn"
+"toolkit.array.torch" = "tt"
+"toolkit.typing" = "tp"
+"toolkit.validation" = "tv"
+"trimesh" = "tm"
+"trimesh.transformations" = "tf"
+"ubelt" = "ub"
+
+[lint.flake8-type-checking]
+runtime-evaluated-base-classes = [
+  "pydantic.BaseModel",
+  "pydantic_settings.BaseSettings",
+  "sqlalchemy.orm.DeclarativeBase",
+  "toolkit.BaseConfig",
+]
+runtime-evaluated-decorators = [
+  "attrs.define",
+  "pydantic.validate_call",
+  "toolkit.main",
+]
+
+[lint.pydocstyle]
+convention = "google"

liblaf_melon-0.1.0/.github/linters/pyrightconfig.json

@@ -0,0 +1,12 @@
+{
+  "$schema": "https://raw.githubusercontent.com/microsoft/pyright/main/packages/vscode-pyright/schemas/pyrightconfig.schema.json",
+
+  "enableTypeIgnoreComments": false,
+
+  "typeCheckingMode": "standard",
+
+  "reportArgumentType": "information",
+  "reportAssignmentType": "information",
+  "reportPrivateImportUsage": "none",
+  "reportRedeclaration": "none"
+}

liblaf_melon-0.1.0/.github/release-please/.manifest.json

@@ -0,0 +1 @@
+{".":"0.1.0"}

liblaf_melon-0.1.0/.github/release-please/config.json

@@ -0,0 +1,92 @@
+{
+  "$schema": "https://github.com/googleapis/release-please/raw/refs/heads/main/schemas/config.json",
+  "release-type": "python",
+  "bump-minor-pre-major": true,
+  "bump-patch-for-minor-pre-major": true,
+  "changelog-sections": [
+    {
+      "type": "feat",
+      "section": "✨ Features"
+    },
+    {
+      "type": "feature",
+      "section": "✨ Features"
+    },
+    {
+      "type": "fix",
+      "scope": "deps",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "fix",
+      "scope": "deps-dev",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "build",
+      "scope": "deps",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "build",
+      "scope": "deps-dev",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "chore",
+      "scope": "deps",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "chore",
+      "scope": "deps-dev",
+      "section": "⬆️ Dependencies"
+    },
+    {
+      "type": "fix",
+      "section": "🐛 Bug Fixes"
+    },
+    {
+      "type": "perf",
+      "section": "⚡ Performance Improvements"
+    },
+    {
+      "type": "revert",
+      "section": "⏪ Reverts"
+    },
+    {
+      "type": "docs",
+      "section": "📝 Documentation"
+    },
+    {
+      "type": "style",
+      "section": "💄 Styles"
+    },
+    {
+      "type": "chore",
+      "section": "🎫 Chores",
+      "hidden": true
+    },
+    {
+      "type": "refactor",
+      "section": "♻ Code Refactoring"
+    },
+    {
+      "type": "test",
+      "section": "✅ Tests"
+    },
+    {
+      "type": "build",
+      "section": "👷 Build System"
+    },
+    {
+      "type": "ci",
+      "section": "🔧 Continuous Integration"
+    }
+  ],
+  "include-component-in-tag": false,
+  "initial-version": "0.0.0",
+  "packages": {
+    ".": {}
+  }
+}

liblaf_melon-0.1.0/.github/renovate.json

@@ -0,0 +1,4 @@
+{
+  "$schema": "https://docs.renovatebot.com/renovate-schema.json",
+  "extends": ["github>liblaf/.github:renovate-config"]
+}

liblaf_melon-0.1.0/.github/workflows/shared-docs.yaml

@@ -0,0 +1,42 @@
+# This file is @generated by <https://github.com/liblaf/copier-python>.
+# DO NOT EDIT!
+
+name: (Shared) Docs
+
+on:
+  push:
+
+jobs:
+  docs:
+    name: Docs
+    permissions:
+      contents: write
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+      - if: hashFiles('pixi.lock') != ''
+        name: Setup Pixi
+        uses: prefix-dev/setup-pixi@v0
+        with:
+          run-install: true
+          activate-environment: true
+          locked: false
+      - if: hashFiles('uv.lock') != ''
+        name: Setup uv
+        uses: astral-sh/setup-uv@v5
+      - if: hashFiles('docs/scripts/prepare.sh') != ''
+        name: Prepare
+        run: docs/scripts/prepare.sh
+      - name: Build
+        run: mkdocs build
+      - name: Upload Artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: docs
+          path: site/
+      - if: github.ref == 'refs/heads/main'
+        name: Deploy
+        run: mkdocs gh-deploy --force --no-history

liblaf_melon-0.1.0/.github/workflows/shared-mega-linter.yaml

@@ -0,0 +1,39 @@
+# This file is @generated by <https://github.com/liblaf/copier-shared>.
+# DO NOT EDIT!
+
+# https://github.com/oxsecurity/megalinter/blob/main/mega-linter-runner/generators/mega-linter/templates/mega-linter.yml
+# https://megalinter.io
+
+name: (Shared) MegaLinter
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  mega-linter:
+    name: MegaLinter
+    permissions:
+      contents: write # commit fix
+      issues: write # https://megalinter.io/latest/reporters/GitHubCommentReporter/
+      pull-requests: write # https://megalinter.io/latest/reporters/GitHubCommentReporter/
+      security-events: write # https://megalinter.io/latest/reporters/SarifReporter/
+      statuses: write # https://megalinter.io/latest/reporters/GitHubStatusReporter/
+    runs-on: ubuntu-latest
+    concurrency:
+      group: ${{ github.workflow }}-${{ github.ref }}-mega-linter
+      cancel-in-progress: true
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          token: ${{ secrets.PAT || github.token }}
+      - name: MegaLinter
+        uses: liblaf/actions/mega-linter@main
+      - name: Remove MegaLinter Reports
+        run: sudo rm --force --recursive "mega-linter.log" "megalinter-reports/"
+      - name: Auto Commit
+        uses: stefanzweifel/git-auto-commit-action@v5
+        with:
+          commit_message: "chore(mega-linter): apply linters fixes"
+          add_options: --update

liblaf_melon-0.1.0/.github/workflows/shared-pr.yaml

@@ -0,0 +1,51 @@
+# This file is @generated by <https://github.com/liblaf/copier-shared>.
+# DO NOT EDIT!
+
+name: (Shared) PR
+
+on:
+  schedule:
+    - cron: "0 0 * * *"
+    - cron: "0 0 * * 0"
+  workflow_dispatch:
+
+jobs:
+  merge:
+    name: Merge
+    permissions:
+      pull-requests: write
+    if: >-
+      (
+        github.event_name == 'schedule' &&
+        github.event.schedule == '0 0 * * 0'
+      ) || github.event_name == 'workflow_dispatch'
+    runs-on: ubuntu-latest
+    concurrency:
+      group: ${{ github.workflow }}-merge
+      cancel-in-progress: true
+    steps:
+      - name: Merge
+        uses: liblaf/actions/pr-label@main
+        with:
+          add-label: automerge
+          label: "autorelease: pending"
+          token: ${{ secrets.PAT || github.token }}
+
+  review:
+    name: Review
+    permissions:
+      pull-requests: write
+    if: >-
+      (
+        github.event_name == 'schedule' &&
+        github.event.schedule == '0 0 * * *'
+      ) || github.event_name == 'workflow_dispatch'
+    runs-on: ubuntu-latest
+    concurrency:
+      group: ${{ github.workflow }}-review
+      cancel-in-progress: true
+    steps:
+      - name: Review
+        uses: liblaf/actions/pr-review@main
+        with:
+          token: ${{ secrets.PAT || github.token }}