libgunshotmatch 0.11.1__tar.gz → 0.11.2__tar.gz

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Files changed (22) hide show
  1. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/PKG-INFO +2 -2
  2. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/README.rst +1 -1
  3. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/__init__.py +1 -1
  4. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/comparison/projects.py +6 -3
  5. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/pyproject.toml +1 -1
  6. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/LICENSE +0 -0
  7. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/comparison/__init__.py +0 -0
  8. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/comparison/_utils.py +0 -0
  9. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/comparison/unknowns.py +0 -0
  10. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/consolidate/__init__.py +0 -0
  11. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/consolidate/_fields.py +0 -0
  12. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/consolidate/_spectra.py +0 -0
  13. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/datafile.py +0 -0
  14. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/gzip_util.py +0 -0
  15. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/method/__init__.py +0 -0
  16. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/method/_fields.py +0 -0
  17. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/peak.py +0 -0
  18. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/project.py +0 -0
  19. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/py.typed +0 -0
  20. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/search.py +0 -0
  21. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/utils.py +0 -0
  22. {libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/requirements.txt +0 -0
{libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.2
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  Name: libgunshotmatch
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- Version: 0.11.1
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+ Version: 0.11.2
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  Summary: Base library for GunShotMatch.
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  Author-email: Dominic Davis-Foster <dominic@davis-foster.co.uk>
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  License: MIT
@@ -135,7 +135,7 @@ libgunshotmatch
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  .. |language| image:: https://img.shields.io/github/languages/top/GunShotMatch/libgunshotmatch
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  :alt: GitHub top language
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- .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.11.1
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+ .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.11.2
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  :target: https://github.com/GunShotMatch/libgunshotmatch/pulse
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  :alt: GitHub commits since tagged version
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{libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/README.rst RENAMED
@@ -91,7 +91,7 @@ libgunshotmatch
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  .. |language| image:: https://img.shields.io/github/languages/top/GunShotMatch/libgunshotmatch
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  :alt: GitHub top language
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- .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.11.1
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+ .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.11.2
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  :target: https://github.com/GunShotMatch/libgunshotmatch/pulse
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  :alt: GitHub commits since tagged version
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{libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/__init__.py RENAMED
@@ -29,5 +29,5 @@ Base library for GunShotMatch.
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  __author__: str = "Dominic Davis-Foster"
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  __copyright__: str = "2020-2023 Dominic Davis-Foster"
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  __license__: str = "MIT License"
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- __version__: str = "0.11.1"
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+ __version__: str = "0.11.2"
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  __email__: str = "dominic@davis-foster.co.uk"
{libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/libgunshotmatch/comparison/projects.py RENAMED
@@ -52,15 +52,18 @@ def filter_alignment_to_consolidate(project: Project) -> Alignment:
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  # Sort expr_code and peakpos into order from datafile_data
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  desired_order = list(project.datafile_data)[::-1]
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- sort_map = [desired_order.index(code) for code in project.alignment.expr_code]
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+ sort_map = [project.alignment.expr_code.index(code) for code in desired_order]
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  expr_code = [project.alignment.expr_code[idx] for idx in sort_map]
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  peakpos = [project.alignment.peakpos[idx] for idx in sort_map]
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+ assert desired_order == expr_code
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- consolidated_peak_retention_times = [cp.rt_list for cp in project.consolidated_peaks]
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+ consolidated_peak_retention_times = []
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+ for cp in project.consolidated_peaks:
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+ consolidated_peak_retention_times.append([None if numpy.isnan(rt) else rt for rt in cp.rt_list])
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  aligned_peaks_surviving_consolidate = []
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  for aligned_peaks in zip(*peakpos):
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- aprt = [p.rt for p in reversed(aligned_peaks)]
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+ aprt = [None if p is None else p.rt for p in reversed(aligned_peaks)]
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  if aprt in consolidated_peak_retention_times:
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  aligned_peaks_surviving_consolidate.append(aligned_peaks)
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{libgunshotmatch-0.11.1 → libgunshotmatch-0.11.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "whey"
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  [project]
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  name = "libgunshotmatch"
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- version = "0.11.1"
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+ version = "0.11.2"
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  description = "Base library for GunShotMatch."
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  readme = "README.rst"
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  keywords = []