libgunshotmatch 0.1.0__tar.gz

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  1. libgunshotmatch-0.1.0/LICENSE +19 -0
  2. libgunshotmatch-0.1.0/PKG-INFO +163 -0
  3. libgunshotmatch-0.1.0/README.rst +120 -0
  4. libgunshotmatch-0.1.0/libgunshotmatch/__init__.py +33 -0
  5. libgunshotmatch-0.1.0/libgunshotmatch/consolidate/__init__.py +644 -0
  6. libgunshotmatch-0.1.0/libgunshotmatch/consolidate/_fields.py +82 -0
  7. libgunshotmatch-0.1.0/libgunshotmatch/consolidate/_spectra.py +74 -0
  8. libgunshotmatch-0.1.0/libgunshotmatch/datafile.py +476 -0
  9. libgunshotmatch-0.1.0/libgunshotmatch/gzip_util.py +69 -0
  10. libgunshotmatch-0.1.0/libgunshotmatch/method/__init__.py +272 -0
  11. libgunshotmatch-0.1.0/libgunshotmatch/method/_fields.py +179 -0
  12. libgunshotmatch-0.1.0/libgunshotmatch/peak.py +506 -0
  13. libgunshotmatch-0.1.0/libgunshotmatch/project.py +230 -0
  14. libgunshotmatch-0.1.0/libgunshotmatch/py.typed +0 -0
  15. libgunshotmatch-0.1.0/libgunshotmatch/search.py +100 -0
  16. libgunshotmatch-0.1.0/libgunshotmatch/utils.py +108 -0
  17. libgunshotmatch-0.1.0/pyproject.toml +198 -0
  18. libgunshotmatch-0.1.0/requirements.txt +13 -0
libgunshotmatch-0.1.0/LICENSE ADDED
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+ Copyright (c) 2023 Dominic Davis-Foster
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
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+ IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
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+ DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
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+ OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE
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+ OR OTHER DEALINGS IN THE SOFTWARE.
libgunshotmatch-0.1.0/PKG-INFO ADDED
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+ Metadata-Version: 2.1
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+ Name: libgunshotmatch
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+ Version: 0.1.0
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+ Summary: Base library for GunShotMatch.
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+ Author-email: Dominic Davis-Foster <dominic@davis-foster.co.uk>
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+ License: MIT
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+ Home-page: https://github.com/GunShotMatch/libgunshotmatch
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+ Project-URL: Issue Tracker, https://github.com/GunShotMatch/libgunshotmatch/issues
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+ Project-URL: Source Code, https://github.com/GunShotMatch/libgunshotmatch
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+ Project-URL: Documentation, https://libgunshotmatch.readthedocs.io/en/latest
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+ Platform: Windows
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+ Platform: macOS
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+ Platform: Linux
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+ Classifier: Development Status :: 3 - Alpha
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+ Classifier: Intended Audience :: Developers
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 3 :: Only
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+ Classifier: Programming Language :: Python :: 3.8
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: Implementation :: CPython
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ Classifier: Typing :: Typed
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+ Requires-Python: >=3.8
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+ Requires-Dist: attrs>=23.1.0
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+ Requires-Dist: chemistry-tools>=v1.0.0b2
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+ Requires-Dist: domdf-python-tools>=3.6.1
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+ Requires-Dist: enum-tools>=0.10.0
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+ Requires-Dist: mathematical>=0.5.1
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+ Requires-Dist: numpy>=1.22
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+ Requires-Dist: pandas>=2.0.3
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+ Requires-Dist: pymassspec>=2.3.0
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+ Requires-Dist: pyms-nist-search>=0.6.1
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+ Requires-Dist: scipy>=1.9.0
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+ Requires-Dist: sdjson>=0.4.0
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+ Requires-Dist: tomli>=1.2.3; python_version < "3.11"
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+ Requires-Dist: tomli-w>=1.0.0
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+ Description-Content-Type: text/x-rst
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+
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+
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+ ================
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+ libgunshotmatch
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+ ================
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+
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+ .. start short_desc
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+
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+ **Base library for GunShotMatch.**
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+
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+ .. end short_desc
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+
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+
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+ .. start shields
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+
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+ .. list-table::
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+ :stub-columns: 1
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+ :widths: 10 90
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+
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+ * - Docs
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+ - |docs| |docs_check|
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+ * - Tests
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+ - |actions_linux| |actions_windows| |actions_macos|
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+ * - PyPI
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+ - |pypi-version| |supported-versions| |supported-implementations| |wheel|
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+ * - Activity
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+ - |commits-latest| |commits-since| |maintained| |pypi-downloads|
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+ * - QA
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+ - |codefactor| |actions_flake8| |actions_mypy|
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+ * - Other
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+ - |license| |language| |requires|
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+
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+ .. |docs| image:: https://img.shields.io/readthedocs/libgunshotmatch/latest?logo=read-the-docs
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+ :target: https://libgunshotmatch.readthedocs.io/en/latest
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+ :alt: Documentation Build Status
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+
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+ .. |docs_check| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Docs%20Check/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Docs+Check%22
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+ :alt: Docs Check Status
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+
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+ .. |actions_linux| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Linux/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Linux%22
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+ :alt: Linux Test Status
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+
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+ .. |actions_windows| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Windows/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Windows%22
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+ :alt: Windows Test Status
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+
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+ .. |actions_macos| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/macOS/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22macOS%22
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+ :alt: macOS Test Status
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+
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+ .. |actions_flake8| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Flake8/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Flake8%22
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+ :alt: Flake8 Status
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+
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+ .. |actions_mypy| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/mypy/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22mypy%22
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+ :alt: mypy status
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+
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+ .. |requires| image:: https://dependency-dash.repo-helper.uk/github/GunShotMatch/libgunshotmatch/badge.svg
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+ :target: https://dependency-dash.repo-helper.uk/github/GunShotMatch/libgunshotmatch/
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+ :alt: Requirements Status
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+
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+ .. |codefactor| image:: https://img.shields.io/codefactor/grade/github/GunShotMatch/libgunshotmatch?logo=codefactor
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+ :target: https://www.codefactor.io/repository/github/GunShotMatch/libgunshotmatch
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+ :alt: CodeFactor Grade
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+
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+ .. |pypi-version| image:: https://img.shields.io/pypi/v/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Package Version
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+
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+ .. |supported-versions| image:: https://img.shields.io/pypi/pyversions/libgunshotmatch?logo=python&logoColor=white
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Supported Python Versions
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+
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+ .. |supported-implementations| image:: https://img.shields.io/pypi/implementation/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Supported Implementations
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+
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+ .. |wheel| image:: https://img.shields.io/pypi/wheel/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Wheel
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+
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+ .. |license| image:: https://img.shields.io/github/license/GunShotMatch/libgunshotmatch
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/blob/master/LICENSE
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+ :alt: License
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+
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+ .. |language| image:: https://img.shields.io/github/languages/top/GunShotMatch/libgunshotmatch
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+ :alt: GitHub top language
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+
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+ .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.1.0
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/pulse
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+ :alt: GitHub commits since tagged version
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+
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+ .. |commits-latest| image:: https://img.shields.io/github/last-commit/GunShotMatch/libgunshotmatch
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/commit/master
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+ :alt: GitHub last commit
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+
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+ .. |maintained| image:: https://img.shields.io/maintenance/yes/2023
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+ :alt: Maintenance
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+
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+ .. |pypi-downloads| image:: https://img.shields.io/pypi/dm/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Downloads
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+
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+ .. end shields
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+
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+ Installation
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+ --------------
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+
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+ .. start installation
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+
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+ ``libgunshotmatch`` can be installed from PyPI.
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+
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+ To install with ``pip``:
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+
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+ .. code-block:: bash
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+
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+ $ python -m pip install libgunshotmatch
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+
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+ .. end installation
libgunshotmatch-0.1.0/README.rst ADDED
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+ ================
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+ libgunshotmatch
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+ ================
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+
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+ .. start short_desc
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+
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+ **Base library for GunShotMatch.**
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+
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+ .. end short_desc
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+
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+
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+ .. start shields
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+
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+ .. list-table::
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+ :stub-columns: 1
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+ :widths: 10 90
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+
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+ * - Docs
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+ - |docs| |docs_check|
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+ * - Tests
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+ - |actions_linux| |actions_windows| |actions_macos|
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+ * - PyPI
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+ - |pypi-version| |supported-versions| |supported-implementations| |wheel|
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+ * - Activity
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+ - |commits-latest| |commits-since| |maintained| |pypi-downloads|
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+ * - QA
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+ - |codefactor| |actions_flake8| |actions_mypy|
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+ * - Other
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+ - |license| |language| |requires|
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+
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+ .. |docs| image:: https://img.shields.io/readthedocs/libgunshotmatch/latest?logo=read-the-docs
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+ :target: https://libgunshotmatch.readthedocs.io/en/latest
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+ :alt: Documentation Build Status
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+
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+ .. |docs_check| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Docs%20Check/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Docs+Check%22
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+ :alt: Docs Check Status
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+
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+ .. |actions_linux| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Linux/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Linux%22
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+ :alt: Linux Test Status
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+
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+ .. |actions_windows| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Windows/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Windows%22
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+ :alt: Windows Test Status
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+
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+ .. |actions_macos| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/macOS/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22macOS%22
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+ :alt: macOS Test Status
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+
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+ .. |actions_flake8| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/Flake8/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22Flake8%22
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+ :alt: Flake8 Status
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+
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+ .. |actions_mypy| image:: https://github.com/GunShotMatch/libgunshotmatch/workflows/mypy/badge.svg
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/actions?query=workflow%3A%22mypy%22
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+ :alt: mypy status
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+
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+ .. |requires| image:: https://dependency-dash.repo-helper.uk/github/GunShotMatch/libgunshotmatch/badge.svg
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+ :target: https://dependency-dash.repo-helper.uk/github/GunShotMatch/libgunshotmatch/
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+ :alt: Requirements Status
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+
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+ .. |codefactor| image:: https://img.shields.io/codefactor/grade/github/GunShotMatch/libgunshotmatch?logo=codefactor
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+ :target: https://www.codefactor.io/repository/github/GunShotMatch/libgunshotmatch
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+ :alt: CodeFactor Grade
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+
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+ .. |pypi-version| image:: https://img.shields.io/pypi/v/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Package Version
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+
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+ .. |supported-versions| image:: https://img.shields.io/pypi/pyversions/libgunshotmatch?logo=python&logoColor=white
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Supported Python Versions
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+
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+ .. |supported-implementations| image:: https://img.shields.io/pypi/implementation/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Supported Implementations
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+
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+ .. |wheel| image:: https://img.shields.io/pypi/wheel/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Wheel
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+
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+ .. |license| image:: https://img.shields.io/github/license/GunShotMatch/libgunshotmatch
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/blob/master/LICENSE
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+ :alt: License
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+
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+ .. |language| image:: https://img.shields.io/github/languages/top/GunShotMatch/libgunshotmatch
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+ :alt: GitHub top language
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+
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+ .. |commits-since| image:: https://img.shields.io/github/commits-since/GunShotMatch/libgunshotmatch/v0.1.0
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/pulse
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+ :alt: GitHub commits since tagged version
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+
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+ .. |commits-latest| image:: https://img.shields.io/github/last-commit/GunShotMatch/libgunshotmatch
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+ :target: https://github.com/GunShotMatch/libgunshotmatch/commit/master
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+ :alt: GitHub last commit
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+
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+ .. |maintained| image:: https://img.shields.io/maintenance/yes/2023
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+ :alt: Maintenance
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+
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+ .. |pypi-downloads| image:: https://img.shields.io/pypi/dm/libgunshotmatch
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+ :target: https://pypi.org/project/libgunshotmatch/
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+ :alt: PyPI - Downloads
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+
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+ .. end shields
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+
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+ Installation
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+ --------------
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+
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+ .. start installation
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+
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+ ``libgunshotmatch`` can be installed from PyPI.
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+
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+ To install with ``pip``:
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+
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+ .. code-block:: bash
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+
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+ $ python -m pip install libgunshotmatch
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+
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+ .. end installation
libgunshotmatch-0.1.0/libgunshotmatch/__init__.py ADDED
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+ #!/usr/bin/env python3
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+ #
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+ # __init__.py
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+ """
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+ Base library for GunShotMatch.
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+ """
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+ #
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+ # Copyright © 2020-2023 Dominic Davis-Foster <dominic@davis-foster.co.uk>
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+ #
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+ # Permission is hereby granted, free of charge, to any person obtaining a copy
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+ # of this software and associated documentation files (the "Software"), to deal
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+ # in the Software without restriction, including without limitation the rights
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+ # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ # copies of the Software, and to permit persons to whom the Software is
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+ # furnished to do so, subject to the following conditions:
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+ #
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+ # The above copyright notice and this permission notice shall be included in all
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+ # copies or substantial portions of the Software.
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+ #
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+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ # EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+ # MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
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+ # IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
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+ # DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
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+ # OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE
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+ # OR OTHER DEALINGS IN THE SOFTWARE.
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+ #
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+
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+ __author__: str = "Dominic Davis-Foster"
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+ __copyright__: str = "2020-2023 Dominic Davis-Foster"
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+ __license__: str = "MIT License"
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+ __version__: str = "0.1.0"
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+ __email__: str = "dominic@davis-foster.co.uk"