legend-pydataobj 1.5.0a2__tar.gz → 1.5.0a3__tar.gz

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Files changed (66) hide show
  1. {legend_pydataobj-1.5.0a2/src/legend_pydataobj.egg-info → legend_pydataobj-1.5.0a3}/PKG-INFO +1 -1
  2. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3/src/legend_pydataobj.egg-info}/PKG-INFO +1 -1
  3. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/_version.py +1 -1
  4. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lh5/store.py +16 -0
  5. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/lh5/test_lh5_store.py +0 -27
  6. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/LICENSE +0 -0
  7. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/README.md +0 -0
  8. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/pyproject.toml +0 -0
  9. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/setup.cfg +0 -0
  10. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/setup.py +0 -0
  11. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/SOURCES.txt +0 -0
  12. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/dependency_links.txt +0 -0
  13. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/entry_points.txt +0 -0
  14. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/not-zip-safe +0 -0
  15. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/requires.txt +0 -0
  16. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/legend_pydataobj.egg-info/top_level.txt +0 -0
  17. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/__init__.py +0 -0
  18. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/cli.py +0 -0
  19. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/__init__.py +0 -0
  20. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/base.py +0 -0
  21. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/generic.py +0 -0
  22. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/radware.py +0 -0
  23. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/utils.py +0 -0
  24. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/compression/varlen.py +0 -0
  25. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lgdo_utils.py +0 -0
  26. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lh5/__init__.py +0 -0
  27. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lh5/iterator.py +0 -0
  28. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lh5/utils.py +0 -0
  29. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/lh5_store.py +0 -0
  30. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/logging.py +0 -0
  31. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/__init__.py +0 -0
  32. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/array.py +0 -0
  33. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/arrayofequalsizedarrays.py +0 -0
  34. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/encoded.py +0 -0
  35. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/fixedsizearray.py +0 -0
  36. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/lgdo.py +0 -0
  37. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/scalar.py +0 -0
  38. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/struct.py +0 -0
  39. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/table.py +0 -0
  40. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/vectorofvectors.py +0 -0
  41. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/types/waveformtable.py +0 -0
  42. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/units.py +0 -0
  43. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/src/lgdo/utils.py +0 -0
  44. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/conftest.py +0 -0
  45. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/sigcompress/LDQTA_r117_20200110T105115Z_cal_geds_raw-0.dat +0 -0
  46. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/sigcompress/special-wf-clipped.dat +0 -0
  47. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/test_compression.py +0 -0
  48. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/test_radware_sigcompress.py +0 -0
  49. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/test_str2wfcodec.py +0 -0
  50. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/compression/test_uleb128_zigzag_diff.py +0 -0
  51. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/conftest.py +0 -0
  52. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/lh5/test_lh5_iterator.py +0 -0
  53. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/lh5/test_lh5_utils.py +0 -0
  54. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/test_cli.py +0 -0
  55. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/test_lgdo_utils.py +0 -0
  56. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_array.py +0 -0
  57. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_arrayofequalsizedarrays.py +0 -0
  58. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_encoded.py +0 -0
  59. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_fixedsizearray.py +0 -0
  60. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_representations.py +0 -0
  61. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_scalar.py +0 -0
  62. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_struct.py +0 -0
  63. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_table.py +0 -0
  64. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_table_eval.py +0 -0
  65. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_vectorofvectors.py +0 -0
  66. {legend_pydataobj-1.5.0a2 → legend_pydataobj-1.5.0a3}/tests/types/test_waveformtable.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: legend_pydataobj
3
- Version: 1.5.0a2
3
+ Version: 1.5.0a3
4
4
  Summary: LEGEND Python Data Objects
5
5
  Home-page: https://github.com/legend-exp/legend-pydataobj
6
6
  Author: The LEGEND Collaboration
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: legend_pydataobj
3
- Version: 1.5.0a2
3
+ Version: 1.5.0a3
4
4
  Summary: LEGEND Python Data Objects
5
5
  Home-page: https://github.com/legend-exp/legend-pydataobj
6
6
  Author: The LEGEND Collaboration
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '1.5.0a2'
15
+ __version__ = version = '1.5.0a3'
16
16
  __version_tuple__ = version_tuple = (1, 5, 0)
@@ -12,6 +12,7 @@ import sys
12
12
  from bisect import bisect_left
13
13
  from collections import defaultdict
14
14
  from typing import Any, Union
15
+ from warnings import warn
15
16
 
16
17
  import h5py
17
18
  import numba as nb
@@ -1467,6 +1468,14 @@ def load_nda(
1467
1468
  Each entry contains the data for the specified parameter concatenated
1468
1469
  over all files in `f_list`.
1469
1470
  """
1471
+ warn(
1472
+ "load_nda() is deprecated. "
1473
+ "Please replace it with LH5Store.read(...).view_as('np'). "
1474
+ "load_nda() will be removed in a future release.",
1475
+ DeprecationWarning,
1476
+ stacklevel=2,
1477
+ )
1478
+
1470
1479
  if isinstance(f_list, str):
1471
1480
  f_list = [f_list]
1472
1481
  if idx_list is not None:
@@ -1521,6 +1530,13 @@ def load_dfs(
1521
1530
  all data for the associated parameters concatenated over all files in
1522
1531
  `f_list`.
1523
1532
  """
1533
+ warn(
1534
+ "load_dfs() is deprecated. "
1535
+ "Please replace it with LH5Store.read(...).view_as('pd'). "
1536
+ "load_dfs() will be removed in a future release.",
1537
+ DeprecationWarning,
1538
+ stacklevel=2,
1539
+ )
1524
1540
  return pd.DataFrame(
1525
1541
  load_nda(f_list, par_list, lh5_group=lh5_group, idx_list=idx_list)
1526
1542
  )
@@ -3,7 +3,6 @@ import os
3
3
 
4
4
  import h5py
5
5
  import numpy as np
6
- import pandas as pd
7
6
  import pytest
8
7
 
9
8
  import lgdo
@@ -69,21 +68,6 @@ def test_show(lgnd_file):
69
68
  lh5.show(lgnd_file, "geds/raw")
70
69
 
71
70
 
72
- def test_load_nda(lgnd_file):
73
- nda = lh5.load_nda(
74
- [lgnd_file, lgnd_file],
75
- ["baseline", "waveform/values"],
76
- lh5_group="/geds/raw",
77
- idx_list=[[1, 3, 5], [2, 6, 7]],
78
- )
79
-
80
- assert isinstance(nda, dict)
81
- assert isinstance(nda["baseline"], np.ndarray)
82
- assert nda["baseline"].shape == (6,)
83
- assert isinstance(nda["waveform/values"], np.ndarray)
84
- assert nda["waveform/values"].shape == (6, 5592)
85
-
86
-
87
71
  @pytest.fixture(scope="module")
88
72
  def lh5_file(tmptestdir):
89
73
  store = lh5.LH5Store()
@@ -906,14 +890,3 @@ def test_write_object_append_column(tmptestdir):
906
890
  assert isinstance(tb_dat, types.Table)
907
891
  assert np.array_equal(tb_dat["dset1"].nda, np.zeros(10))
908
892
  assert np.array_equal(tb_dat["dset2"].nda, np.ones(10))
909
-
910
-
911
- def test_load_dfs(lgnd_file):
912
- dfs = lh5.load_dfs(
913
- [lgnd_file, lgnd_file],
914
- ["baseline", "waveform/t0"],
915
- lh5_group="/geds/raw",
916
- idx_list=[[1, 3, 5], [2, 6, 7]],
917
- )
918
-
919
- assert isinstance(dfs, pd.DataFrame)