legend-dataflow-scripts 0.1.1__tar.gz → 0.1.2__tar.gz

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Files changed (43) hide show
  1. {legend_dataflow_scripts-0.1.1/src/legend_dataflow_scripts.egg-info → legend_dataflow_scripts-0.1.2}/PKG-INFO +1 -1
  2. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2/src/legend_dataflow_scripts.egg-info}/PKG-INFO +1 -1
  3. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/_version.py +2 -2
  4. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/workflow/execenv.py +11 -14
  5. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/LICENSE +0 -0
  6. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/README.md +0 -0
  7. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/pyproject.toml +0 -0
  8. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/setup.cfg +0 -0
  9. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/SOURCES.txt +0 -0
  10. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/dependency_links.txt +0 -0
  11. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/entry_points.txt +0 -0
  12. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/not-zip-safe +0 -0
  13. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/requires.txt +0 -0
  14. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legend_dataflow_scripts.egg-info/top_level.txt +0 -0
  15. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/__init__.py +0 -0
  16. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/__init__.py +0 -0
  17. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/__init__.py +0 -0
  18. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/__init__.py +0 -0
  19. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/dplms.py +0 -0
  20. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/eopt.py +0 -0
  21. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/evtsel.py +0 -0
  22. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/nopt.py +0 -0
  23. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/pz.py +0 -0
  24. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/svm.py +0 -0
  25. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/dsp/svm_build.py +0 -0
  26. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/hit/__init__.py +0 -0
  27. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/hit/aoe.py +0 -0
  28. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/hit/ecal.py +0 -0
  29. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/hit/lq.py +0 -0
  30. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/par/geds/hit/qc.py +0 -0
  31. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/tier/__init__.py +0 -0
  32. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/tier/dsp.py +0 -0
  33. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/tier/hit.py +0 -0
  34. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/__init__.py +0 -0
  35. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/alias_table.py +0 -0
  36. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/cfgtools.py +0 -0
  37. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/convert_np.py +0 -0
  38. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/log.py +0 -0
  39. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/utils/pulser_removal.py +0 -0
  40. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/workflow/__init__.py +0 -0
  41. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/workflow/filedb.py +0 -0
  42. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/workflow/pre_compile_catalog.py +0 -0
  43. {legend_dataflow_scripts-0.1.1 → legend_dataflow_scripts-0.1.2}/src/legenddataflowscripts/workflow/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: legend-dataflow-scripts
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- Version: 0.1.1
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+ Version: 0.1.2
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  Summary: Python package for the processing scripts for LEGEND-200 data
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  Author-email: George Marshall <ggmarsh@uw.edu>, Luigi Pertoldi <gipert@pm.me>
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  Maintainer: The LEGEND Collaboration
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: legend-dataflow-scripts
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- Version: 0.1.1
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+ Version: 0.1.2
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  Summary: Python package for the processing scripts for LEGEND-200 data
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  Author-email: George Marshall <ggmarsh@uw.edu>, Luigi Pertoldi <gipert@pm.me>
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  Maintainer: The LEGEND Collaboration
@@ -17,5 +17,5 @@ __version__: str
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '0.1.1'
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- __version_tuple__ = version_tuple = (0, 1, 1)
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+ __version__ = version = '0.1.2'
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+ __version_tuple__ = version_tuple = (0, 1, 2)
@@ -18,6 +18,8 @@ from . import utils
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  log = logging.getLogger(__name__)
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+ OCI_ENGINES = ["docker", "podman", "podman-hpc", "shifter"]
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+
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  def _execenv2str(cmd_expr: Iterable, cmd_env: Mapping) -> str:
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  return " ".join([f"{k}={v}" for k, v in cmd_env.items()]) + " " + " ".join(cmd_expr)
@@ -27,12 +29,7 @@ def apptainer_env_vars(cmdenv: Mapping) -> list[str]:
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  return [f"--env={var}={val}" for var, val in cmdenv.items()]
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- def docker_env_vars(cmdenv: Mapping) -> list[str]:
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- # same syntax
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- return apptainer_env_vars(cmdenv)
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-
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-
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- def shifter_env_vars(cmdenv: Mapping) -> list[str]:
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+ def oci_engine_env_vars(cmdenv: Mapping) -> list[str]:
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  # same syntax
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  return apptainer_env_vars(cmdenv)
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@@ -69,20 +66,20 @@ def execenv_prefix(
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  if has_xdg:
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  cmdline += [f"--bind={xdg_runtime_dir}"]
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- elif "docker" in config.execenv.cmd:
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- cmdline += docker_env_vars(config.execenv.env)
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-
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- elif "shifter" in config.execenv.cmd:
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- cmdline += shifter_env_vars(config.execenv.env)
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+ elif any(engine in config.execenv.cmd for engine in OCI_ENGINES):
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+ cmdline += oci_engine_env_vars(config.execenv.env)
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+ # no XDG mount with shifter
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  if (
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- any(exe in config.execenv.cmd for exe in ("docker", "shifter"))
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+ any(exe in config.execenv.cmd for exe in OCI_ENGINES)
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  and has_xdg
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+ and "shifter" not in config.execenv.cmd
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  ):
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  cmdline += [f"--volume={xdg_runtime_dir}:{xdg_runtime_dir}"]
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  # now we can add the arguments
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- cmdline += shlex.split(config.execenv.arg)
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+ _arg = config.execenv.arg
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+ cmdline += shlex.split(_arg if isinstance(_arg, str) else " ".join(_arg))
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87
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  if as_string:
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  return _execenv2str(cmdline, cmdenv) + " "
@@ -192,7 +189,7 @@ def dataflow() -> None:
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  )
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  )
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- logger = logging.getLogger("legenddataflow")
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+ logger = logging.getLogger("legenddataflowscripts")
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  logger.setLevel(logging.DEBUG)
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  logger.addHandler(handler)
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