lbm_suite2p_python 3.0.2__tar.gz → 3.0.3__tar.gz

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Files changed (32) hide show
  1. {lbm_suite2p_python-3.0.2/lbm_suite2p_python.egg-info → lbm_suite2p_python-3.0.3}/PKG-INFO +2 -2
  2. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/run_lsp.py +8 -1
  3. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3/lbm_suite2p_python.egg-info}/PKG-INFO +2 -2
  4. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/requires.txt +1 -1
  5. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/pyproject.toml +2 -2
  6. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/LICENSE.md +0 -0
  7. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/MANIFEST.in +0 -0
  8. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/README.md +0 -0
  9. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/__init__.py +0 -0
  10. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/__main__.py +0 -0
  11. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/_benchmarking.py +0 -0
  12. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/cellpose.py +0 -0
  13. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/cli.py +0 -0
  14. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/conversion.py +0 -0
  15. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/db_settings.py +0 -0
  16. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/default_ops.py +0 -0
  17. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/grid_search.py +0 -0
  18. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/gui.py +0 -0
  19. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/merging.py +0 -0
  20. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/postprocessing.py +0 -0
  21. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/utils.py +0 -0
  22. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/volume.py +0 -0
  23. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/zplane.py +0 -0
  24. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/SOURCES.txt +0 -0
  25. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/dependency_links.txt +0 -0
  26. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/entry_points.txt +0 -0
  27. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/top_level.txt +0 -0
  28. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/setup.cfg +0 -0
  29. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/tests/test_frame_count_aliases.py +0 -0
  30. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/tests/test_pipeline_parameters.py +0 -0
  31. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/tests/test_refactored_pipeline.py +0 -0
  32. {lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/tests/test_run_volume.py +0 -0
{lbm_suite2p_python-3.0.2/lbm_suite2p_python.egg-info → lbm_suite2p_python-3.0.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lbm_suite2p_python
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- Version: 3.0.2
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+ Version: 3.0.3
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  Summary: Calcium Imaging Pipeline built with Suite2p, Cellpose and Rastermap
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  License-Expression: BSD-3-Clause
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  Project-URL: homepage, https://github.com/MillerBrainObservatory/LBM-Suite2p-Python
@@ -11,7 +11,7 @@ Classifier: Programming Language :: Python :: 3 :: Only
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  Requires-Python: <3.14,>=3.12.7
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  Description-Content-Type: text/markdown
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  License-File: LICENSE.md
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- Requires-Dist: mbo_utilities>=3.0.1
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+ Requires-Dist: mbo_utilities>=3.0.2
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  Requires-Dist: suite2p>=1.0.0.1
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  Requires-Dist: setuptools<81
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  Provides-Extra: rastermap
{lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python/run_lsp.py RENAMED
@@ -2052,7 +2052,12 @@ def run_plane(
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  nframes_hint = existing_ops.get("nframes_chan1") or existing_ops.get(
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  "nframes"
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  )
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- subdir_name = generate_plane_dirname(plane=naming_plane, nframes=nframes_hint)
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+ subdir_name = generate_plane_dirname(
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+ plane=naming_plane,
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+ nframes=nframes_hint,
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+ frame_start=(int(min(frame_indices)) + 1) if frame_indices else 1,
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+ frame_stop=(int(max(frame_indices)) + 1) if frame_indices else None,
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+ )
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  plane_dir = save_path / subdir_name
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  plane_dir.mkdir(exist_ok=True)
@@ -2122,6 +2127,8 @@ def run_plane(
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  subdir_name = generate_plane_dirname(
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  plane=naming_plane,
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  nframes=nframes_hint,
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+ frame_start=(int(min(frame_indices)) + 1) if frame_indices else 1,
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+ frame_stop=(int(max(frame_indices)) + 1) if frame_indices else None,
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  )
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  plane_dir = save_path / subdir_name
{lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3/lbm_suite2p_python.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lbm_suite2p_python
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- Version: 3.0.2
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+ Version: 3.0.3
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  Summary: Calcium Imaging Pipeline built with Suite2p, Cellpose and Rastermap
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  License-Expression: BSD-3-Clause
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  Project-URL: homepage, https://github.com/MillerBrainObservatory/LBM-Suite2p-Python
@@ -11,7 +11,7 @@ Classifier: Programming Language :: Python :: 3 :: Only
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  Requires-Python: <3.14,>=3.12.7
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  Description-Content-Type: text/markdown
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  License-File: LICENSE.md
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- Requires-Dist: mbo_utilities>=3.0.1
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+ Requires-Dist: mbo_utilities>=3.0.2
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  Requires-Dist: suite2p>=1.0.0.1
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  Requires-Dist: setuptools<81
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  Provides-Extra: rastermap
{lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/lbm_suite2p_python.egg-info/requires.txt RENAMED
@@ -1,4 +1,4 @@
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- mbo_utilities>=3.0.1
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+ mbo_utilities>=3.0.2
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  suite2p>=1.0.0.1
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  setuptools<81
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{lbm_suite2p_python-3.0.2 → lbm_suite2p_python-3.0.3}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "lbm_suite2p_python"
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- version = "3.0.2"
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+ version = "3.0.3"
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  description = "Calcium Imaging Pipeline built with Suite2p, Cellpose and Rastermap"
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  readme = "README.md"
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  license = "BSD-3-Clause"
@@ -18,7 +18,7 @@ classifiers=[
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  ]
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  dependencies = [
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- "mbo_utilities>=3.0.1",
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+ "mbo_utilities>=3.0.2",
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  "suite2p>=1.0.0.1",
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  "setuptools<81",
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  ]