lbm_suite2p_python 2.5.1__tar.gz → 2.5.3__tar.gz

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Files changed (32) hide show
  1. {lbm_suite2p_python-2.5.1/lbm_suite2p_python.egg-info → lbm_suite2p_python-2.5.3}/PKG-INFO +2 -2
  2. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/__init__.py +25 -0
  3. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cli.py +529 -529
  4. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/grid_search.py +1 -1
  5. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/postprocessing.py +126 -0
  6. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/run_lsp.py +167 -49
  7. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/volume.py +12 -9
  8. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/zplane.py +3 -2
  9. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3/lbm_suite2p_python.egg-info}/PKG-INFO +2 -2
  10. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/requires.txt +1 -1
  11. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/pyproject.toml +2 -2
  12. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/LICENSE.md +0 -0
  13. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/MANIFEST.in +0 -0
  14. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/README.md +0 -0
  15. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/__main__.py +0 -0
  16. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/_benchmarking.py +0 -0
  17. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cellpose.py +0 -0
  18. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cellpose_workflow.py +0 -0
  19. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/conversion.py +0 -0
  20. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/default_ops.py +0 -0
  21. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/gui.py +0 -0
  22. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/merging.py +0 -0
  23. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/normcorre.py +0 -0
  24. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/utils.py +0 -0
  25. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/SOURCES.txt +0 -0
  26. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/dependency_links.txt +0 -0
  27. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/entry_points.txt +0 -0
  28. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/top_level.txt +0 -0
  29. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/setup.cfg +0 -0
  30. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_pipeline_parameters.py +0 -0
  31. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_refactored_pipeline.py +0 -0
  32. {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_run_volume.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lbm_suite2p_python
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- Version: 2.5.1
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+ Version: 2.5.3
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  Summary: Light Beads Microscopy Pipeline using Suite2p
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  License-Expression: BSD-3-Clause
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  Project-URL: homepage, https://github.com/MillerBrainObservatory/LBM-Suite2p-Python
@@ -11,7 +11,7 @@ Classifier: Programming Language :: Python :: 3 :: Only
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  Requires-Python: <3.12.10,>=3.12.7
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  Description-Content-Type: text/markdown
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  License-File: LICENSE.md
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- Requires-Dist: mbo_utilities>=2.4.3
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+ Requires-Dist: mbo_utilities>=2.5.1
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  Provides-Extra: suite2p
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  Requires-Dist: suite2p_mbo>=2.0.1; extra == "suite2p"
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  Provides-Extra: rastermap
@@ -6,6 +6,7 @@ from lbm_suite2p_python.run_lsp import (
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  run_volume,
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  run_plane,
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  add_processing_step,
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+ generate_plane_dirname,
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  )
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  # Cellpose workflow exports
@@ -60,6 +61,18 @@ from lbm_suite2p_python.grid_search import (
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  collect_grid_results,
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  save_grid_results,
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  plot_grid_metrics,
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+ get_best_parameters,
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+ print_best_parameters,
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+ plot_grid_distributions,
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+ plot_grid_masks,
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+ )
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+
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+ from lbm_suite2p_python.postprocessing import (
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+ load_ops,
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+ load_planar_results,
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+ dff_rolling_percentile,
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+ dff_shot_noise,
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+ compute_roi_stats,
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  )
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  # Re-export key modules for easier access
@@ -84,6 +97,7 @@ __all__ = [
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  "run_plane",
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  "default_ops",
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  "add_processing_step",
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+ "generate_plane_dirname",
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  # Cellpose / HITL Workflow
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  "redetect",
@@ -112,6 +126,17 @@ __all__ = [
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  "collect_grid_results",
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  "save_grid_results",
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  "plot_grid_metrics",
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+ "get_best_parameters",
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+ "print_best_parameters",
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+ "plot_grid_distributions",
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+ "plot_grid_masks",
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+
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+ # Postprocessing
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+ "load_ops",
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+ "load_planar_results",
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+ "dff_rolling_percentile",
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+ "dff_shot_noise",
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+ "compute_roi_stats",
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  # Plotting (Z-Plane)
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  "plot_traces",