lbm_suite2p_python 2.5.1__tar.gz → 2.5.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {lbm_suite2p_python-2.5.1/lbm_suite2p_python.egg-info → lbm_suite2p_python-2.5.3}/PKG-INFO +2 -2
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/__init__.py +25 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cli.py +529 -529
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/grid_search.py +1 -1
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/postprocessing.py +126 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/run_lsp.py +167 -49
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/volume.py +12 -9
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/zplane.py +3 -2
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3/lbm_suite2p_python.egg-info}/PKG-INFO +2 -2
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/requires.txt +1 -1
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/pyproject.toml +2 -2
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/LICENSE.md +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/MANIFEST.in +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/README.md +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/__main__.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/_benchmarking.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cellpose.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/cellpose_workflow.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/conversion.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/default_ops.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/gui.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/merging.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/normcorre.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python/utils.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/SOURCES.txt +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/dependency_links.txt +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/entry_points.txt +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/lbm_suite2p_python.egg-info/top_level.txt +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/setup.cfg +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_pipeline_parameters.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_refactored_pipeline.py +0 -0
- {lbm_suite2p_python-2.5.1 → lbm_suite2p_python-2.5.3}/tests/test_run_volume.py +0 -0
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Metadata-Version: 2.4
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Name: lbm_suite2p_python
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Version: 2.5.
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Version: 2.5.3
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Summary: Light Beads Microscopy Pipeline using Suite2p
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License-Expression: BSD-3-Clause
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Project-URL: homepage, https://github.com/MillerBrainObservatory/LBM-Suite2p-Python
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Requires-Python: <3.12.10,>=3.12.7
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Description-Content-Type: text/markdown
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License-File: LICENSE.md
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Requires-Dist: mbo_utilities>=2.
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Requires-Dist: mbo_utilities>=2.5.1
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Provides-Extra: suite2p
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Requires-Dist: suite2p_mbo>=2.0.1; extra == "suite2p"
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Provides-Extra: rastermap
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@@ -6,6 +6,7 @@ from lbm_suite2p_python.run_lsp import (
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run_volume,
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run_plane,
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add_processing_step,
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generate_plane_dirname,
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)
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# Cellpose workflow exports
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collect_grid_results,
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save_grid_results,
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plot_grid_metrics,
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get_best_parameters,
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print_best_parameters,
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plot_grid_distributions,
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plot_grid_masks,
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)
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from lbm_suite2p_python.postprocessing import (
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load_ops,
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load_planar_results,
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dff_rolling_percentile,
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dff_shot_noise,
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compute_roi_stats,
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)
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# Re-export key modules for easier access
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"run_plane",
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"default_ops",
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"add_processing_step",
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"generate_plane_dirname",
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# Cellpose / HITL Workflow
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"redetect",
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"collect_grid_results",
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"save_grid_results",
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"plot_grid_metrics",
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"get_best_parameters",
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"print_best_parameters",
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"plot_grid_distributions",
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"plot_grid_masks",
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# Postprocessing
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"load_ops",
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"load_planar_results",
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"dff_rolling_percentile",
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"dff_shot_noise",
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"compute_roi_stats",
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# Plotting (Z-Plane)
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"plot_traces",
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