lattice-sub 1.1.0__tar.gz → 1.1.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. {lattice_sub-1.1.0/src/lattice_sub.egg-info → lattice_sub-1.1.2}/PKG-INFO +4 -4
  2. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/README.md +3 -3
  3. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/pyproject.toml +1 -1
  4. {lattice_sub-1.1.0 → lattice_sub-1.1.2/src/lattice_sub.egg-info}/PKG-INFO +4 -4
  5. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/__init__.py +1 -1
  6. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/LICENSE +0 -0
  7. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/MANIFEST.in +0 -0
  8. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/docs/images/example_comparison.png +0 -0
  9. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/docs/images/threshold_analysis.png +0 -0
  10. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/examples/config.yaml +0 -0
  11. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/examples/converted_params.yaml +0 -0
  12. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/setup.cfg +0 -0
  13. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_sub.egg-info/SOURCES.txt +0 -0
  14. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_sub.egg-info/dependency_links.txt +0 -0
  15. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_sub.egg-info/entry_points.txt +0 -0
  16. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_sub.egg-info/requires.txt +0 -0
  17. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_sub.egg-info/top_level.txt +0 -0
  18. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/batch.py +0 -0
  19. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/cli.py +0 -0
  20. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/config.py +0 -0
  21. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/core.py +0 -0
  22. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/io.py +0 -0
  23. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/masks.py +0 -0
  24. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/processing.py +0 -0
  25. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/threshold_optimizer.py +0 -0
  26. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/ui.py +0 -0
  27. {lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/visualization.py +0 -0
{lattice_sub-1.1.0/src/lattice_sub.egg-info → lattice_sub-1.1.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lattice-sub
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- Version: 1.1.0
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+ Version: 1.1.2
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  Summary: Lattice subtraction for cryo-EM micrographs - removes periodic crystal signals to reveal non-periodic features
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  Author-email: George Stephenson <george.stephenson@colorado.edu>, Vignesh Kasinath <vignesh.kasinath@colorado.edu>
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  License: MIT
@@ -56,7 +56,7 @@ Dynamic: license-file
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  **Remove periodic lattice patterns from cryo-EM micrographs to reveal non-periodic features.**
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- ![Example Result](docs/images/example_comparison.png)
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+ ![Example Result](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/example_comparison.png)
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  ---
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@@ -245,7 +245,7 @@ lattice-sub batch --help
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  **Original MATLAB algorithm**: Vignesh Kasinath
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  **Python package**: George Stephenson
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- Kasinath Lab, BioFrontiers Institute, University of Colorado Boulder
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+ Kasinath Lab (Dept of Biochemistry) & BioFrontiers Institute, University of Colorado Boulder
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  ---
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@@ -277,7 +277,7 @@ Version 1.1.0 introduces two major optimizations that make the tool both **faste
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  **Result:** Each image gets its optimal threshold automatically.
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- ![Threshold Distribution Analysis](docs/images/threshold_analysis.png)
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+ ![Threshold Distribution Analysis](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/threshold_analysis.png)
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  #### 2. GPU-Accelerated Background Subtraction (Kornia)
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{lattice_sub-1.1.0 → lattice_sub-1.1.2}/README.md RENAMED
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  **Remove periodic lattice patterns from cryo-EM micrographs to reveal non-periodic features.**
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- ![Example Result](docs/images/example_comparison.png)
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+ ![Example Result](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/example_comparison.png)
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  ---
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@@ -204,7 +204,7 @@ lattice-sub batch --help
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  **Original MATLAB algorithm**: Vignesh Kasinath
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  **Python package**: George Stephenson
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- Kasinath Lab, BioFrontiers Institute, University of Colorado Boulder
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+ Kasinath Lab (Dept of Biochemistry) & BioFrontiers Institute, University of Colorado Boulder
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  ---
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@@ -236,7 +236,7 @@ Version 1.1.0 introduces two major optimizations that make the tool both **faste
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  **Result:** Each image gets its optimal threshold automatically.
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- ![Threshold Distribution Analysis](docs/images/threshold_analysis.png)
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+ ![Threshold Distribution Analysis](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/threshold_analysis.png)
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  #### 2. GPU-Accelerated Background Subtraction (Kornia)
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{lattice_sub-1.1.0 → lattice_sub-1.1.2}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "lattice-sub"
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- version = "1.1.0"
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+ version = "1.1.2"
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  description = "Lattice subtraction for cryo-EM micrographs - removes periodic crystal signals to reveal non-periodic features"
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  readme = "README.md"
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  license = {text = "MIT"}
{lattice_sub-1.1.0 → lattice_sub-1.1.2/src/lattice_sub.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: lattice-sub
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- Version: 1.1.0
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+ Version: 1.1.2
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  Summary: Lattice subtraction for cryo-EM micrographs - removes periodic crystal signals to reveal non-periodic features
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  Author-email: George Stephenson <george.stephenson@colorado.edu>, Vignesh Kasinath <vignesh.kasinath@colorado.edu>
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  License: MIT
@@ -56,7 +56,7 @@ Dynamic: license-file
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  **Remove periodic lattice patterns from cryo-EM micrographs to reveal non-periodic features.**
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- ![Example Result](docs/images/example_comparison.png)
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+ ![Example Result](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/example_comparison.png)
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  ---
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@@ -245,7 +245,7 @@ lattice-sub batch --help
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  **Original MATLAB algorithm**: Vignesh Kasinath
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  **Python package**: George Stephenson
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- Kasinath Lab, BioFrontiers Institute, University of Colorado Boulder
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+ Kasinath Lab (Dept of Biochemistry) & BioFrontiers Institute, University of Colorado Boulder
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  ---
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@@ -277,7 +277,7 @@ Version 1.1.0 introduces two major optimizations that make the tool both **faste
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  **Result:** Each image gets its optimal threshold automatically.
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- ![Threshold Distribution Analysis](docs/images/threshold_analysis.png)
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+ ![Threshold Distribution Analysis](https://raw.githubusercontent.com/gsstephenson/cryoem-lattice-subtraction/main/docs/images/threshold_analysis.png)
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  #### 2. GPU-Accelerated Background Subtraction (Kornia)
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{lattice_sub-1.1.0 → lattice_sub-1.1.2}/src/lattice_subtraction/__init__.py RENAMED
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  >>> result.save("output.mrc")
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  """
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- __version__ = "1.1.0"
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+ __version__ = "1.1.1"
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  __author__ = "George Stephenson & Vignesh Kasinath"
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  from .config import Config
{lattice_sub-1.1.0 → lattice_sub-1.1.2}/LICENSE RENAMED
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{lattice_sub-1.1.0 → lattice_sub-1.1.2}/MANIFEST.in RENAMED
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{lattice_sub-1.1.0 → lattice_sub-1.1.2}/setup.cfg RENAMED
File without changes