latch 2.40.4.dev6__tar.gz → 2.40.4.dev7__tar.gz

{latch-2.40.4.dev6/latch.egg-info → latch-2.40.4.dev7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: latch
-Version: 2.40.4.dev6
+Version: 2.40.4.dev7
 Summary: The Latch SDK
 Author-email: kenny@latch.bio
 Classifier: Programming Language :: Python :: 3.8

{latch-2.40.4.dev6 → latch-2.40.4.dev7}/latch/types/metadata.py

@@ -4,7 +4,6 @@ from enum import Enum
 from pathlib import Path
 from textwrap import indent
 from typing import (
-    Annotated,
     Any,
     Callable,
     ClassVar,
@@ -22,7 +21,7 @@ from typing import (
 
 import click
 import yaml
-from typing_extensions import TypeAlias
+from typing_extensions import Annotated, TypeAlias
 
 from latch_cli.utils import identifier_suffix_from_str
 

{latch-2.40.4.dev6 → latch-2.40.4.dev7/latch.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: latch
-Version: 2.40.4.dev6
+Version: 2.40.4.dev7
 Summary: The Latch SDK
 Author-email: kenny@latch.bio
 Classifier: Programming Language :: Python :: 3.8

{latch-2.40.4.dev6 → latch-2.40.4.dev7}/latch_cli/extras/nextflow/file_persistence.py

@@ -2,7 +2,7 @@ import json
 import os
 from dataclasses import dataclass
 from pathlib import Path
-from typing import Dict, List, Optional, Set, Union, cast
+from typing import Dict, List, Optional, Set, Union
 from urllib.parse import urlparse
 
 import click
@@ -54,7 +54,9 @@ class PathData:
     remote: Optional[str] = None
 
 
-def _extract_paths(parameter: JSONValue, res: List[PathData]):
+def _extract_paths(
+    parameter: JSONValue, res: List[PathData], is_download: bool = False
+):
     if not isinstance(parameter, Dict):
         raise ValueError(f"malformed parameter: {parameter}")
 
@@ -77,7 +79,7 @@ def _extract_paths(parameter: JSONValue, res: List[PathData]):
             return
 
         res.append(PathData(parameter=parameter, local=local, remote=remote))
-    elif "string" in parameter:
+    elif "string" in parameter and is_download:
         v = parameter["string"]
         assert isinstance(v, str)
 
@@ -87,13 +89,13 @@ def _extract_paths(parameter: JSONValue, res: List[PathData]):
         parameter["path"] = v
         del parameter["string"]
 
-        _extract_paths(parameter, res)
+        _extract_paths(parameter, res, is_download)
     elif "list" in parameter:
         v = parameter["list"]
         assert isinstance(v, List)
 
         for x in v:
-            _extract_paths(x, res)
+            _extract_paths(x, res, is_download)
     elif "map" in parameter:
         v = parameter["map"]
         assert isinstance(v, List)
@@ -103,8 +105,8 @@ def _extract_paths(parameter: JSONValue, res: List[PathData]):
             if "key" not in x or "value" not in x:
                 raise ValueError(f"malformed map entry: {x}")
 
-            _extract_paths(x["key"], res)
-            _extract_paths(x["value"], res)
+            _extract_paths(x["key"], res, is_download)
+            _extract_paths(x["value"], res, is_download)
 
 
 def _get_execution_name() -> Optional[str]:
@@ -135,10 +137,10 @@ def download_files(
     path_data: List[PathData] = []
     for channel in channels:
         if type(channel) == dict and "value" in channel:
-            _extract_paths(channel["value"], path_data)
+            _extract_paths(channel["value"], path_data, is_download=True)
         elif type(channel) == list:
             for param in channel:
-                _extract_paths(param, path_data)
+                _extract_paths(param, path_data, is_download=True)
 
     remote = _get_remote(outdir)
 

{latch-2.40.4.dev6 → latch-2.40.4.dev7}/setup.py

@@ -13,7 +13,7 @@ if cur_ver < (3, 8) or cur_ver > (3, 11):
 
 setup(
     name="latch",
-    version="v2.40.4.dev6",
+    version="v2.40.4.dev7",
     author_email="kenny@latch.bio",
     description="The Latch SDK",
     packages=find_packages(),