latch 2.39.0.dev31__tar.gz → 2.39.0.dev32__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (202) hide show
  1. {latch-2.39.0.dev31/latch.egg-info → latch-2.39.0.dev32}/PKG-INFO +1 -1
  2. {latch-2.39.0.dev31 → latch-2.39.0.dev32/latch.egg-info}/PKG-INFO +1 -1
  3. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/file_persistence.py +9 -1
  4. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/operator.py +2 -0
  5. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/process.py +2 -0
  6. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/setup.py +1 -1
  7. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/LICENSE +0 -0
  8. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/MANIFEST.in +0 -0
  9. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/README.md +0 -0
  10. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/__init__.py +0 -0
  11. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/account.py +0 -0
  12. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/executions.py +0 -0
  13. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/functions/__init__.py +0 -0
  14. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/functions/messages.py +0 -0
  15. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/functions/operators.py +0 -0
  16. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/functions/secrets.py +0 -0
  17. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/__init__.py +0 -0
  18. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/__init__.py +0 -0
  19. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/download.py +0 -0
  20. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/manager.py +0 -0
  21. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/node.py +0 -0
  22. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/progress.py +0 -0
  23. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/remote_copy.py +0 -0
  24. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/throttle.py +0 -0
  25. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/upload.py +0 -0
  26. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/_transfer/utils.py +0 -0
  27. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/path.py +0 -0
  28. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/ldata/type.py +0 -0
  29. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/__init__.py +0 -0
  30. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/project.py +0 -0
  31. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/record.py +0 -0
  32. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/table.py +0 -0
  33. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/types.py +0 -0
  34. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/upstream_types/__init__.py +0 -0
  35. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/upstream_types/types.py +0 -0
  36. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/upstream_types/values.py +0 -0
  37. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/registry/utils.py +0 -0
  38. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/__init__.py +0 -0
  39. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/conditional.py +0 -0
  40. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/launch_plan.py +0 -0
  41. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/map_tasks.py +0 -0
  42. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/reference_workflow.py +0 -0
  43. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/tasks.py +0 -0
  44. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/resources/workflow.py +0 -0
  45. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/__init__.py +0 -0
  46. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/directory.py +0 -0
  47. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/file.py +0 -0
  48. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/glob.py +0 -0
  49. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/json.py +0 -0
  50. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/metadata.py +0 -0
  51. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/types/utils.py +0 -0
  52. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/__init__.py +0 -0
  53. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/deseq2.py +0 -0
  54. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/mafft.py +0 -0
  55. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/pathway.py +0 -0
  56. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/rnaseq.py +0 -0
  57. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch/verified/trim_galore.py +0 -0
  58. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch.egg-info/SOURCES.txt +0 -0
  59. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch.egg-info/dependency_links.txt +0 -0
  60. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch.egg-info/entry_points.txt +0 -0
  61. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch.egg-info/requires.txt +0 -0
  62. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch.egg-info/top_level.txt +0 -0
  63. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/__init__.py +0 -0
  64. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/auth/__init__.py +0 -0
  65. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/auth/csrf.py +0 -0
  66. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/auth/oauth2.py +0 -0
  67. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/auth/pkce.py +0 -0
  68. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/auth/utils.py +0 -0
  69. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/centromere/__init__.py +0 -0
  70. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/centromere/ctx.py +0 -0
  71. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/centromere/utils.py +0 -0
  72. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/click_utils.py +0 -0
  73. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/constants.py +0 -0
  74. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/docker_utils/__init__.py +0 -0
  75. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/exceptions/__init__.py +0 -0
  76. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/exceptions/cache.py +0 -0
  77. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/exceptions/errors.py +0 -0
  78. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/exceptions/handler.py +0 -0
  79. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/exceptions/traceback.py +0 -0
  80. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/__init__.py +0 -0
  81. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/__init__.py +0 -0
  82. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/config/__init__.py +0 -0
  83. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/config/parser.py +0 -0
  84. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/config/utils.py +0 -0
  85. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/serialize.py +0 -0
  86. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/common/utils.py +0 -0
  87. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/__init__.py +0 -0
  88. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/build.py +0 -0
  89. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/channel.py +0 -0
  90. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/config.py +0 -0
  91. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/dag.py +0 -0
  92. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/serialize.py +0 -0
  93. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/__init__.py +0 -0
  94. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/adapters.py +0 -0
  95. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/base.py +0 -0
  96. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/conditional.py +0 -0
  97. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/map.py +0 -0
  98. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/merge.py +0 -0
  99. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/workflow.py +0 -0
  100. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/__init__.py +0 -0
  101. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/config.py +0 -0
  102. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/serialize.py +0 -0
  103. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/single_task_snakemake.py +0 -0
  104. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/utils.py +0 -0
  105. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/snakemake/workflow.py +0 -0
  106. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/main.py +0 -0
  107. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/menus.py +0 -0
  108. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/__init__.py +0 -0
  109. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/cp/__init__.py +0 -0
  110. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/cp/autocomplete.py +0 -0
  111. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/cp/glob.py +0 -0
  112. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/cp/main.py +0 -0
  113. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/cp/utils.py +0 -0
  114. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/execute/__init__.py +0 -0
  115. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/execute/main.py +0 -0
  116. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/execute/utils.py +0 -0
  117. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/get.py +0 -0
  118. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/get_executions.py +0 -0
  119. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/get_params.py +0 -0
  120. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__init__.py +0 -0
  121. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/__init__.cpython-310.pyc +0 -0
  122. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/__init__.cpython-311.pyc +0 -0
  123. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/__init__.cpython-38.pyc +0 -0
  124. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/__init__.cpython-39.pyc +0 -0
  125. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/init.cpython-310.pyc +0 -0
  126. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/init.cpython-311.pyc +0 -0
  127. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/init.cpython-38.pyc +0 -0
  128. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/__pycache__/init.cpython-39.pyc +0 -0
  129. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/.env +0 -0
  130. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/LICENSE +0 -0
  131. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/README.md +0 -0
  132. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/__init__.py +0 -0
  133. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/__pycache__/__init__.cpython-310.pyc +0 -0
  134. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/assemble.py +0 -0
  135. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/sort.py +0 -0
  136. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/assemble_and_sort/system-requirements.txt +0 -0
  137. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/common/.dockerignore +0 -0
  138. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_conda/__init__.py +0 -0
  139. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_conda/__pycache__/__init__.cpython-310.pyc +0 -0
  140. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_conda/conda_task.py +0 -0
  141. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_conda/environment.yaml +0 -0
  142. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_docker/__init__.py +0 -0
  143. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_docker/task.py +0 -0
  144. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nf_integration/Dockerfile +0 -0
  145. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nf_integration/latch_metadata/__init__.py +0 -0
  146. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nf_integration/latch_metadata/__pycache__/__init__.cpython-311.pyc +0 -0
  147. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nf_integration/main.nf +0 -0
  148. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nf_integration/workflow.nf +0 -0
  149. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nfcore/Dockerfile +0 -0
  150. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nfcore/__init__.py +0 -0
  151. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_nfcore/task.py +0 -0
  152. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_r/__init__.py +0 -0
  153. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_r/__pycache__/__init__.cpython-310.pyc +0 -0
  154. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_r/environment.R +0 -0
  155. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_r/r_task.py +0 -0
  156. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/.latch/latch_entrypoint +0 -0
  157. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/Dockerfile +0 -0
  158. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/Snakefile +0 -0
  159. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/config.yaml +0 -0
  160. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/environment.yaml +0 -0
  161. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/latch_metadata.py +0 -0
  162. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/scripts/plot-quals.py +0 -0
  163. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/example_snakemake/version +0 -0
  164. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/init.py +0 -0
  165. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/template/LICENSE +0 -0
  166. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/template/README.md +0 -0
  167. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/template/__init__.py +0 -0
  168. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/template/__pycache__/__init__.cpython-310.pyc +0 -0
  169. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/init/template/task.py +0 -0
  170. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/launch.py +0 -0
  171. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/local_dev.py +0 -0
  172. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/local_dev_old.py +0 -0
  173. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/login.py +0 -0
  174. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/ls.py +0 -0
  175. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/mkdir.py +0 -0
  176. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/move.py +0 -0
  177. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/preview.py +0 -0
  178. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/register/__init__.py +0 -0
  179. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/register/constants.py +0 -0
  180. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/register/register.py +0 -0
  181. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/register/utils.py +0 -0
  182. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/rm.py +0 -0
  183. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/stop_pod.py +0 -0
  184. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/sync.py +0 -0
  185. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/test_data/__init__.py +0 -0
  186. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/test_data/ls.py +0 -0
  187. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/test_data/remove.py +0 -0
  188. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/test_data/upload.py +0 -0
  189. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/test_data/utils.py +0 -0
  190. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/services/workspace.py +0 -0
  191. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/tinyrequests.py +0 -0
  192. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/tui/__init__.py +0 -0
  193. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/utils/__init__.py +0 -0
  194. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/utils/path.py +0 -0
  195. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/utils/workflow.py +0 -0
  196. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/workflow_config.py +0 -0
  197. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/pyproject.toml +0 -0
  198. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/setup.cfg +0 -0
  199. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/tests/__init__.py +0 -0
  200. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/tests/cp/__init__.py +0 -0
  201. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/tests/fixtures.py +0 -0
  202. {latch-2.39.0.dev31 → latch-2.39.0.dev32}/tests/test_ls.py +0 -0
{latch-2.39.0.dev31/latch.egg-info → latch-2.39.0.dev32}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: latch
3
- Version: 2.39.0.dev31
3
+ Version: 2.39.0.dev32
4
4
  Summary: The Latch SDK
5
5
  Author-email: kenny@latch.bio
6
6
  Classifier: Programming Language :: Python :: 3.8
{latch-2.39.0.dev31 → latch-2.39.0.dev32/latch.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: latch
3
- Version: 2.39.0.dev31
3
+ Version: 2.39.0.dev32
4
4
  Summary: The Latch SDK
5
5
  Author-email: kenny@latch.bio
6
6
  Classifier: Programming Language :: Python :: 3.8
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/file_persistence.py RENAMED
@@ -2,6 +2,7 @@ import os
2
2
  import shutil
3
3
  from pathlib import Path
4
4
  from typing import Dict, List, Optional, Set, Union
5
+ from urllib.parse import urlparse
5
6
 
6
7
  import click
7
8
  import gql
@@ -59,7 +60,14 @@ def _extract_paths(parameter: JSONValue, res: List[Path]):
59
60
  if k == "path":
60
61
  assert isinstance(v, str)
61
62
 
62
- res.append(Path(v).absolute().relative_to(Path.home()))
63
+ parsed = urlparse(v)
64
+ if parsed.scheme == "latch":
65
+ p = LPath(v).download()
66
+ res.append(p)
67
+ parameter[k] = str(p)
68
+ elif parsed.scheme == "":
69
+ res.append(Path(v).absolute().relative_to(Path.home()))
70
+
63
71
  elif k == "list":
64
72
  assert isinstance(v, List)
65
73
 
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/operator.py RENAMED
@@ -115,6 +115,8 @@ class NextflowOperatorTask(NextflowBaseTask):
115
115
  "/root/nextflow",
116
116
  "run",
117
117
  str(nf_script_path_in_container),
118
+ "-lib",
119
+ "lib",
118
120
  ]
119
121
 
120
122
  for flag, val in self.wf.flags_to_params.items():
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/latch_cli/extras/nextflow/tasks/process.py RENAMED
@@ -116,6 +116,8 @@ class NextflowProcessTask(NextflowBaseTask):
116
116
  "/root/nextflow",
117
117
  "run",
118
118
  str(nf_script_path_in_container),
119
+ "-lib",
120
+ "lib",
119
121
  ]
120
122
 
121
123
  if self.execution_profile is not None:
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/setup.py RENAMED
@@ -13,7 +13,7 @@ if cur_ver < (3, 8) or cur_ver > (3, 11):
13
13
 
14
14
  setup(
15
15
  name="latch",
16
- version="v2.39.0.dev31",
16
+ version="v2.39.0.dev32",
17
17
  author_email="kenny@latch.bio",
18
18
  description="The Latch SDK",
19
19
  packages=find_packages(),
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/LICENSE RENAMED
File without changes
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/MANIFEST.in RENAMED
File without changes
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/README.md RENAMED
File without changes
{latch-2.39.0.dev31 → latch-2.39.0.dev32}/setup.cfg RENAMED
File without changes