latch 2.39.0.dev18__tar.gz → 2.39.0.dev19__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {latch-2.39.0.dev18/latch.egg-info → latch-2.39.0.dev19}/PKG-INFO +1 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19/latch.egg-info}/PKG-INFO +1 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/build.py +1 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/channel.py +23 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/operator.py +0 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/process.py +2 -3
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/setup.py +1 -1
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/LICENSE +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/MANIFEST.in +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/README.md +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/account.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/executions.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/functions/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/functions/messages.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/functions/operators.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/functions/secrets.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/download.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/manager.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/node.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/progress.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/remote_copy.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/throttle.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/upload.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/_transfer/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/path.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/ldata/type.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/project.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/record.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/table.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/types.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/upstream_types/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/upstream_types/types.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/upstream_types/values.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/registry/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/conditional.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/launch_plan.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/map_tasks.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/reference_workflow.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/tasks.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/resources/workflow.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/directory.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/file.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/glob.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/json.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/metadata.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/types/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/deseq2.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/mafft.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/pathway.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/rnaseq.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch/verified/trim_galore.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch.egg-info/SOURCES.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch.egg-info/dependency_links.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch.egg-info/entry_points.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch.egg-info/requires.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch.egg-info/top_level.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/auth/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/auth/csrf.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/auth/oauth2.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/auth/pkce.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/auth/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/centromere/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/centromere/ctx.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/centromere/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/click_utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/constants.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/docker_utils/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/exceptions/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/exceptions/cache.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/exceptions/errors.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/exceptions/handler.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/exceptions/traceback.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/common/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/common/serialize.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/common/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/dag.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/file_persistence.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/serialize.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/adapters.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/base.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/conditional.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/input.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/map.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/merge.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/tasks/output.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/nextflow/workflow.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/config/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/config/parser.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/config/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/serialize.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/single_task_snakemake.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/workflow.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/main.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/menus.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/cp/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/cp/autocomplete.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/cp/glob.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/cp/main.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/cp/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/execute/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/execute/main.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/execute/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/get.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/get_executions.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/get_params.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/__init__.cpython-310.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/__init__.cpython-311.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/__init__.cpython-38.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/__init__.cpython-39.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/init.cpython-310.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/init.cpython-311.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/init.cpython-38.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/__pycache__/init.cpython-39.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/.env +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/LICENSE +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/README.md +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/__pycache__/__init__.cpython-310.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/assemble.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/sort.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/assemble_and_sort/system-requirements.txt +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/common/.dockerignore +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_conda/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_conda/__pycache__/__init__.cpython-310.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_conda/conda_task.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_conda/environment.yaml +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_docker/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_docker/task.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nf_integration/Dockerfile +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nf_integration/latch_metadata/__init__.py +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nf_integration/main.nf +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nf_integration/workflow.nf +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nfcore/Dockerfile +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_nfcore/task.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_r/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_r/__pycache__/__init__.cpython-310.pyc +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_snakemake/.latch/latch_entrypoint +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_snakemake/Snakefile +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_snakemake/config.yaml +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_snakemake/latch_metadata.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/example_snakemake/scripts/plot-quals.py +0 -0
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- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/init.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/template/LICENSE +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/template/README.md +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/template/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/template/__pycache__/__init__.cpython-310.pyc +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/init/template/task.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/launch.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/local_dev.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/local_dev_old.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/login.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/ls.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/mkdir.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/move.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/preview.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/register/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/register/constants.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/register/register.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/register/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/rm.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/stop_pod.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/sync.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/test_data/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/test_data/ls.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/test_data/remove.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/test_data/upload.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/test_data/utils.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/services/workspace.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/tinyrequests.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/tui/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/utils/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/utils/path.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/workflow_config.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/pyproject.toml +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/setup.cfg +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/tests/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/tests/cp/__init__.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/tests/fixtures.py +0 -0
- {latch-2.39.0.dev18 → latch-2.39.0.dev19}/tests/test_ls.py +0 -0
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@@ -501,7 +501,7 @@ def generate_nf_entrypoint(
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from flytekit.extras.persistence import LatchPersistence
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from latch_cli.extras.nextflow.file_persistence import download_files, stage_for_output, upload_files
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-
from latch_cli.extras.nextflow.channel import get_mapper_inputs
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+
from latch_cli.extras.nextflow.channel import get_mapper_inputs, get_boolean_value
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from latch_cli.utils import check_exists_and_rename, get_parameter_json_value, urljoins
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from latch.resources.tasks import custom_task
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@@ -1,11 +1,33 @@
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import json
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from typing import Dict, List, Type, TypeVar
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from typing import Dict, List, Optional, Type, TypeVar
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from latch.types.metadata import _IsDataclass
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T = TypeVar("T", bound=_IsDataclass)
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def get_boolean_value(channel_value: str) -> bool:
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og_error: Optional[Exception] = None
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try:
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payload = json.loads(channel_value)
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if type(payload) is list:
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return payload[0]["boolean"]
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elif type(payload) is dict:
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return payload["value"]["boolean"]
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except Exception as e:
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og_error = e
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error = ValueError(
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f"Unable to extract boolean value for conditional: {channel_value}"
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)
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if og_error is not None:
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raise error from og_error
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raise error
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def get_mapper_inputs(
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cls: Type[T],
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wf_inputs: Dict[str, object],
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@@ -138,9 +138,8 @@ class NextflowProcessTask(NextflowBaseTask):
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code_block += reindent(
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f"""
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if {k} is not None:
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-
{k}_p =
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-
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-
wf_paths[{k}] = Path("/root") / {k}_p.name
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+
{k}_p = Path("/root/").resolve() # superhack
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+
wf_paths[{k}] = {k}_p
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""",
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{latch-2.39.0.dev18 → latch-2.39.0.dev19}/latch_cli/extras/snakemake/single_task_snakemake.py
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