larray 0.24__tar.gz → 0.25__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (57) hide show
  1. {larray-0.24 → larray-0.25}/PKG-INFO +46 -23
  2. {larray-0.24 → larray-0.25}/README.rst +45 -22
  3. {larray-0.24 → larray-0.25}/larray/__init__.py +1 -1
  4. {larray-0.24 → larray-0.25}/larray/core/array.py +333 -99
  5. {larray-0.24 → larray-0.25}/larray/core/axis.py +165 -9
  6. {larray-0.24 → larray-0.25}/larray/core/group.py +4 -2
  7. {larray-0.24 → larray-0.25}/larray/core/session.py +187 -17
  8. larray-0.25/larray/experiment_docparse.py +107 -0
  9. larray-0.25/larray/experiment_graphicsscene.py +36 -0
  10. larray-0.25/larray/experiment_midas_compare_variants.py +17 -0
  11. larray-0.25/larray/experiments.py +18 -0
  12. larray-0.25/larray/extra/ipfp.py +307 -0
  13. {larray-0.24 → larray-0.25}/larray/io/session.py +43 -16
  14. larray-0.25/larray/test_viewer.py +3 -0
  15. {larray-0.24 → larray-0.25}/larray/tests/test_array.py +70 -3
  16. {larray-0.24 → larray-0.25}/larray/tests/test_group.py +18 -1
  17. larray-0.25/larray/tests/test_ipfp.py +198 -0
  18. {larray-0.24 → larray-0.25}/larray/tests/test_session.py +47 -8
  19. larray-0.25/larray/viewer/__init__.py +13 -0
  20. larray-0.25/larray/viewer/frozen.py +206 -0
  21. {larray-0.24 → larray-0.25}/larray.egg-info/PKG-INFO +46 -23
  22. {larray-0.24 → larray-0.25}/larray.egg-info/SOURCES.txt +6 -4
  23. larray-0.25/larray.egg-info/requires.txt +2 -0
  24. {larray-0.24 → larray-0.25}/setup.py +2 -2
  25. larray-0.24/larray/extra/ipfp.py +0 -236
  26. larray-0.24/larray/tests/test_ipfp.py +0 -93
  27. larray-0.24/larray/viewer/__init__.py +0 -13
  28. larray-0.24/larray/viewer/api.py +0 -343
  29. larray-0.24/larray/viewer/combo.py +0 -244
  30. larray-0.24/larray/viewer/model.py +0 -816
  31. larray-0.24/larray/viewer/view.py +0 -1932
  32. larray-0.24/larray.egg-info/requires.txt +0 -2
  33. {larray-0.24 → larray-0.25}/larray/core/__init__.py +0 -0
  34. {larray-0.24 → larray-0.25}/larray/core/abc.py +0 -0
  35. {larray-0.24 → larray-0.25}/larray/core/expr.py +0 -0
  36. {larray-0.24 → larray-0.25}/larray/core/ufuncs.py +0 -0
  37. {larray-0.24 → larray-0.25}/larray/example.py +0 -0
  38. {larray-0.24 → larray-0.25}/larray/extra/__init__.py +0 -0
  39. {larray-0.24 → larray-0.25}/larray/io/__init__.py +0 -0
  40. {larray-0.24 → larray-0.25}/larray/io/array.py +0 -0
  41. {larray-0.24 → larray-0.25}/larray/io/excel.py +0 -0
  42. {larray-0.24 → larray-0.25}/larray/ipfp/__init__.py +0 -0
  43. {larray-0.24 → larray-0.25}/larray/tests/__init__.py +0 -0
  44. {larray-0.24 → larray-0.25}/larray/tests/common.py +0 -0
  45. {larray-0.24 → larray-0.25}/larray/tests/data/data.h5 +0 -0
  46. {larray-0.24 → larray-0.25}/larray/tests/data/data.xlsx +0 -0
  47. {larray-0.24 → larray-0.25}/larray/tests/data/hh.csv +0 -0
  48. {larray-0.24 → larray-0.25}/larray/tests/data/pop.csv +0 -0
  49. {larray-0.24 → larray-0.25}/larray/tests/data/qx.csv +0 -0
  50. {larray-0.24 → larray-0.25}/larray/tests/test_axis.py +0 -0
  51. {larray-0.24 → larray-0.25}/larray/tests/test_excel.py +0 -0
  52. {larray-0.24 → larray-0.25}/larray/util/__init__.py +0 -0
  53. {larray-0.24 → larray-0.25}/larray/util/misc.py +0 -0
  54. {larray-0.24 → larray-0.25}/larray/util/oset.py +0 -0
  55. {larray-0.24 → larray-0.25}/larray.egg-info/dependency_links.txt +0 -0
  56. {larray-0.24 → larray-0.25}/larray.egg-info/top_level.txt +0 -0
  57. {larray-0.24 → larray-0.25}/setup.cfg +0 -0
@@ -1,20 +1,36 @@
1
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  Metadata-Version: 1.1
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  Name: larray
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- Version: 0.24
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+ Version: 0.25
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  Summary: N-D labeled arrays in Python
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  Home-page: https://github.com/liam2/larray
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  Author: Gaetan de Menten, Geert Bryon, Johan Duyck, Alix Damman
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  Author-email: gdementen@gmail.com
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  License: GPLv3
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- Description: LArray
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- ======
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-
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- larray provides a Labelled Array class
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+ Description: LArray: N-dimensional labelled arrays
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+ =====================================
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  |build-status| |docs|
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+ .. _start-intro:
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+
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+ LArray is open source Python library that aims to provide tools for easy exploration and manipulation of
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+ N-dimensional labelled data structures.
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+
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+ Library Highlights
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+ ------------------
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+
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+ * N-dimensional labelled array objects to store and manipulate multi-dimensional data
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+
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+ * I/O functions for reading and writing arrays in different formats:
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+ CSV, Microsoft Excel, HDF5, pickle
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- .. start-install
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+ * Arrays can be grouped into Session objects and loaded/dumped at once
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+
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+ * User interface with an IPython console for rapid exploration of data
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+
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+ * Compatible with the pandas library: LArray objects can be converted into pandas DataFrame and vice versa.
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+
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+ .. _start-install:
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  Installation
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  ============
@@ -91,19 +107,24 @@ Description: LArray
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  provides functions to easily download EUROSTAT files as larray objects.
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  Currently limited to TSV files.
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+ .. _start-dependencies-gui:
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+
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  For Graphical User Interface
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  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- LArray includes a graphical user interface to
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- view and edit arrays.
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+ LArray includes a graphical user interface to view, edit and compare arrays.
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116
 
100
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  - `pyqt <https://riverbankcomputing.com/software/pyqt/intro>`__ (4 or 5):
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- for using the graphical user interface included in larray.
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+ required by `larray-editor` (see below).
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  - `pyside <https://wiki.qt.io/PySide>`__:
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  alternative to PyQt.
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121
  - `qtpy <https://github.com/spyder-ide/qtpy>`__:
105
- required if you install pyqt or pyside.
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- Provides support for PyQt5, PyQt4 and PySide using the PyQt5 layout
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+ required by `larray-editor`.
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+ Provides support for PyQt5, PyQt4 and PySide using the PyQt5 layout.
124
+ - `larray-editor <https://github.com/larray-project/larray-editor>`__:
125
+ required to use the graphical user interface associated with larray.
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+ It assumes that `qtpy` and `pyqt` or `pyside` are installed.
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+ On windows, creates also a menu ``LArray`` in the Windows Start Menu.
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128
 
108
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  For plotting
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130
  ~~~~~~~~~~~~
@@ -111,33 +132,35 @@ Description: LArray
111
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  - `matplotlib <http://matplotlib.org/>`__:
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  required for plotting.
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134
 
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+ .. _start-documentation:
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136
 
115
- Update
116
- ------
137
+ Documentation
138
+ =============
117
139
 
118
- If larray has been installed through conda, update
119
- is done via ::
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+ The official documentation is hosted on ReadTheDocs at http://larray.readthedocs.io/en/stable/
120
141
 
121
- conda update larray
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+ .. _start-get-in-touch:
122
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123
- Be careful if you have installed optional dependencies.
124
- In that case, you may have to update some of them.
144
+ Get in touch
145
+ ============
125
146
 
126
- If larray has been installed through larrayenv,
127
- you simply must do ::
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+ - Report bugs, suggest features or view the source code `on GitHub`_.
148
+ - For questions, ideas or general discussion, use the `mailing list`_.
128
149
 
129
- conda update larrayenv
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+ .. _on GitHub: http://github.com/liam2/larray
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+ .. _mailing list: https://groups.google.com/forum/#!forum/larray
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+ .. end-readme-file
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  .. |build-status| image:: https://travis-ci.org/liam2/larray.svg?branch=master
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  :alt: build status
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  :scale: 100%
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  :target: https://travis-ci.org/liam2/larray
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- .. |docs| image:: https://readthedocs.org/projects/larray/badge/?version=latest
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+ .. |docs| image:: https://readthedocs.org/projects/larray/badge/?version=stable
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161
  :alt: Documentation Status
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  :scale: 100%
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- :target: https://larray.readthedocs.io/en/latest/?badge=latest
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+ :target: https://larray.readthedocs.io/en/latest/?badge=stable
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  Platform: UNKNOWN
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  Classifier: Development Status :: 4 - Beta
@@ -1,12 +1,28 @@
1
- LArray
2
- ======
3
-
4
- larray provides a Labelled Array class
1
+ LArray: N-dimensional labelled arrays
2
+ =====================================
5
3
 
6
4
  |build-status| |docs|
7
5
 
6
+ .. _start-intro:
7
+
8
+ LArray is open source Python library that aims to provide tools for easy exploration and manipulation of
9
+ N-dimensional labelled data structures.
10
+
11
+ Library Highlights
12
+ ------------------
13
+
14
+ * N-dimensional labelled array objects to store and manipulate multi-dimensional data
15
+
16
+ * I/O functions for reading and writing arrays in different formats:
17
+ CSV, Microsoft Excel, HDF5, pickle
8
18
 
9
- .. start-install
19
+ * Arrays can be grouped into Session objects and loaded/dumped at once
20
+
21
+ * User interface with an IPython console for rapid exploration of data
22
+
23
+ * Compatible with the pandas library: LArray objects can be converted into pandas DataFrame and vice versa.
24
+
25
+ .. _start-install:
10
26
 
11
27
  Installation
12
28
  ============
@@ -83,19 +99,24 @@ For IO (HDF, Excel)
83
99
  provides functions to easily download EUROSTAT files as larray objects.
84
100
  Currently limited to TSV files.
85
101
 
102
+ .. _start-dependencies-gui:
103
+
86
104
  For Graphical User Interface
87
105
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
88
106
 
89
- LArray includes a graphical user interface to
90
- view and edit arrays.
107
+ LArray includes a graphical user interface to view, edit and compare arrays.
91
108
 
92
109
  - `pyqt <https://riverbankcomputing.com/software/pyqt/intro>`__ (4 or 5):
93
- for using the graphical user interface included in larray.
110
+ required by `larray-editor` (see below).
94
111
  - `pyside <https://wiki.qt.io/PySide>`__:
95
112
  alternative to PyQt.
96
113
  - `qtpy <https://github.com/spyder-ide/qtpy>`__:
97
- required if you install pyqt or pyside.
98
- Provides support for PyQt5, PyQt4 and PySide using the PyQt5 layout
114
+ required by `larray-editor`.
115
+ Provides support for PyQt5, PyQt4 and PySide using the PyQt5 layout.
116
+ - `larray-editor <https://github.com/larray-project/larray-editor>`__:
117
+ required to use the graphical user interface associated with larray.
118
+ It assumes that `qtpy` and `pyqt` or `pyside` are installed.
119
+ On windows, creates also a menu ``LArray`` in the Windows Start Menu.
99
120
 
100
121
  For plotting
101
122
  ~~~~~~~~~~~~
@@ -103,30 +124,32 @@ For plotting
103
124
  - `matplotlib <http://matplotlib.org/>`__:
104
125
  required for plotting.
105
126
 
127
+ .. _start-documentation:
106
128
 
107
- Update
108
- ------
129
+ Documentation
130
+ =============
109
131
 
110
- If larray has been installed through conda, update
111
- is done via ::
132
+ The official documentation is hosted on ReadTheDocs at http://larray.readthedocs.io/en/stable/
112
133
 
113
- conda update larray
134
+ .. _start-get-in-touch:
114
135
 
115
- Be careful if you have installed optional dependencies.
116
- In that case, you may have to update some of them.
136
+ Get in touch
137
+ ============
117
138
 
118
- If larray has been installed through larrayenv,
119
- you simply must do ::
139
+ - Report bugs, suggest features or view the source code `on GitHub`_.
140
+ - For questions, ideas or general discussion, use the `mailing list`_.
120
141
 
121
- conda update larrayenv
142
+ .. _on GitHub: http://github.com/liam2/larray
143
+ .. _mailing list: https://groups.google.com/forum/#!forum/larray
122
144
 
145
+ .. end-readme-file
123
146
 
124
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  .. |build-status| image:: https://travis-ci.org/liam2/larray.svg?branch=master
125
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  :alt: build status
126
149
  :scale: 100%
127
150
  :target: https://travis-ci.org/liam2/larray
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151
 
129
- .. |docs| image:: https://readthedocs.org/projects/larray/badge/?version=latest
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+ .. |docs| image:: https://readthedocs.org/projects/larray/badge/?version=stable
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  :alt: Documentation Status
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  :scale: 100%
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- :target: https://larray.readthedocs.io/en/latest/?badge=latest
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+ :target: https://larray.readthedocs.io/en/latest/?badge=stable
@@ -7,4 +7,4 @@ from larray.example import *
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  from larray.extra import *
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  from larray.viewer import *
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9
 
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- __version__ = "0.24"
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+ __version__ = "0.25"