large-image 1.28.3.dev14__tar.gz → 1.28.3.dev16__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. {large-image-1.28.3.dev14/large_image.egg-info → large-image-1.28.3.dev16}/PKG-INFO +72 -72
  2. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/cachefactory.py +2 -12
  3. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/config.py +47 -0
  4. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/base.py +1 -1
  5. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/utilities.py +2 -27
  6. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16/large_image.egg-info}/PKG-INFO +72 -72
  7. large-image-1.28.3.dev16/large_image.egg-info/requires.txt +145 -0
  8. large-image-1.28.3.dev14/large_image.egg-info/requires.txt +0 -145
  9. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/LICENSE +0 -0
  10. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/NOTICE +0 -0
  11. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/README.rst +0 -0
  12. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/annotations.rst +0 -0
  13. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/caching.rst +0 -0
  14. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/conf.py +0 -0
  15. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/config_options.rst +0 -0
  16. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/development.rst +0 -0
  17. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/dicomweb_assetstore.rst +0 -0
  18. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/example_usage.rst +0 -0
  19. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/formats.rst +0 -0
  20. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/girder_annotation_config_options.rst +0 -0
  21. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/girder_config_options.rst +0 -0
  22. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/image_conversion.rst +0 -0
  23. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/index.rst +0 -0
  24. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/large_image_examples.ipynb +0 -0
  25. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/make_docs.sh +0 -0
  26. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/multi_source_specification.rst +0 -0
  27. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/notebooks.rst +0 -0
  28. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/static/custom.css +0 -0
  29. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/tilesource_options.rst +0 -0
  30. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/docs/upgrade.rst +0 -0
  31. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/__init__.py +0 -0
  32. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/__init__.py +0 -0
  33. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/base.py +0 -0
  34. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/cache.py +0 -0
  35. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/memcache.py +0 -0
  36. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/constants.py +0 -0
  37. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/exceptions.py +0 -0
  38. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/__init__.py +0 -0
  39. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/geo.py +0 -0
  40. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/jupyter.py +0 -0
  41. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/resample.py +0 -0
  42. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/stylefuncs.py +0 -0
  43. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/tiledict.py +0 -0
  44. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/tileiterator.py +0 -0
  45. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image.egg-info/SOURCES.txt +0 -0
  46. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image.egg-info/dependency_links.txt +0 -0
  47. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image.egg-info/not-zip-safe +0 -0
  48. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image.egg-info/top_level.txt +0 -0
  49. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/setup.cfg +0 -0
  50. {large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/setup.py +0 -0
{large-image-1.28.3.dev14/large_image.egg-info → large-image-1.28.3.dev16}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: large-image
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- Version: 1.28.3.dev14
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+ Version: 1.28.3.dev16
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  Summary: Python modules to work with large, multiresolution images.
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  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
@@ -26,7 +26,7 @@ Requires-Dist: typing-extensions
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  Provides-Extra: memcached
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  Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "memcached"
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  Provides-Extra: converter
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- Requires-Dist: large-image-converter>=1.28.3.dev14; extra == "converter"
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+ Requires-Dist: large-image-converter>=1.28.3.dev16; extra == "converter"
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  Provides-Extra: colormaps
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  Requires-Dist: matplotlib; extra == "colormaps"
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  Provides-Extra: tiledoutput
@@ -35,102 +35,102 @@ Provides-Extra: performance
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  Requires-Dist: psutil>=4.2.0; extra == "performance"
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  Requires-Dist: simplejpeg; extra == "performance"
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  Provides-Extra: bioformats
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- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "bioformats"
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+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "bioformats"
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  Provides-Extra: deepzoom
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- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "deepzoom"
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+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "deepzoom"
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  Provides-Extra: dicom
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- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "dicom"
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+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "dicom"
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  Provides-Extra: dummy
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- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "dummy"
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+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "dummy"
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  Provides-Extra: gdal
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- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "gdal"
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+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "gdal"
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  Provides-Extra: mapnik
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- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "mapnik"
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+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "mapnik"
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  Provides-Extra: multi
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- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "multi"
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+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "multi"
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  Provides-Extra: nd2
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- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "nd2"
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+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "nd2"
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  Provides-Extra: ometiff
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- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "ometiff"
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+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "ometiff"
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  Provides-Extra: openjpeg
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- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "openjpeg"
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+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "openjpeg"
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  Provides-Extra: openslide
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- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "openslide"
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+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "openslide"
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  Provides-Extra: pil
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- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "pil"
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+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "pil"
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  Provides-Extra: rasterio
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- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "rasterio"
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+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "rasterio"
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  Provides-Extra: test
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- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "test"
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+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "test"
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  Provides-Extra: tiff
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- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "tiff"
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+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "tiff"
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  Provides-Extra: tifffile
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- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "tifffile"
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+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "tifffile"
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  Provides-Extra: vips
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- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "vips"
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+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "vips"
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  Provides-Extra: zarr
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- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "zarr"
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+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "zarr"
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  Provides-Extra: sources
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- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "sources"
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- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "sources"
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+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "sources"
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+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "sources"
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  Provides-Extra: all
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- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-pil[all]>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-converter>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "all"
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- Requires-Dist: psutil>=4.2.0; extra == "all"
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- Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "all"
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  Requires-Dist: matplotlib; extra == "all"
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- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "all"
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- Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "all"
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- Requires-Dist: simplejpeg; extra == "all"
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- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "all"
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+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-multi[all]>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "all"
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  Requires-Dist: pyvips; extra == "all"
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- Requires-Dist: large-image-source-multi[all]>=1.28.3.dev14; extra == "all"
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- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "all"
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+ Requires-Dist: simplejpeg; extra == "all"
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+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-converter>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "all"
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+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-pil[all]>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "all"
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+ Requires-Dist: psutil>=4.2.0; extra == "all"
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  Provides-Extra: common
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- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "common"
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+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "common"
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- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "common"
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+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-pil[all]>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "common"
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+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "common"
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  Requires-Dist: simplejpeg; extra == "common"
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  Requires-Dist: psutil>=4.2.0; extra == "common"
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- Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-pil[all]>=1.28.3.dev14; extra == "common"
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- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "common"
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+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "common"
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  Large Image
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  ===========
{large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/cache_util/cachefactory.py RENAMED
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  import math
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  import threading
19
+ from importlib.metadata import entry_points
19
20
  from typing import Dict, Optional, Tuple, Type
20
21
 
21
22
  import cachetools
22
23
 
23
- try:
24
- import psutil
25
- HAS_PSUTIL = True
26
- except ImportError:
27
- HAS_PSUTIL = False
28
-
29
- from importlib.metadata import entry_points
30
-
31
24
  from .. import config
32
25
  from ..exceptions import TileCacheError
33
26
  from .memcache import MemCache
@@ -92,10 +85,7 @@ def pickAvailableCache(
92
85
  if configMaxItems > 0:
93
86
  maxItems = configMaxItems
94
87
  # Estimate usage based on (1 / portion) of the total virtual memory.
95
- if HAS_PSUTIL:
96
- memory = psutil.virtual_memory().total
97
- else:
98
- memory = 1024 ** 3
88
+ memory = config.total_memory()
99
89
  numItems = max(int(math.floor(memory / portion / sizeEach)), 2)
100
90
  if maxItems:
101
91
  numItems = min(numItems, maxItems)
{large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/config.py RENAMED
@@ -132,3 +132,50 @@ def _ignoreSourceNames(
132
132
  return None
133
133
  if re.search(ignored_names, os.path.basename(path), flags=re.IGNORECASE):
134
134
  raise exceptions.TileSourceError('File will not be opened by %s reader' % configKey)
135
+
136
+
137
+ def cpu_count(logical: bool = True) -> int:
138
+ """
139
+ Get the usable CPU count. If psutil is available, it is used, since it can
140
+ determine the number of physical CPUS versus logical CPUs. This returns
141
+ the smaller of that value from psutil and the number of cpus allowed by the
142
+ os scheduler, which means that for physical requests (logical=False), the
143
+ returned value may be more the the number of physical cpus that are usable.
144
+
145
+ :param logical: True to get the logical usable CPUs (which include
146
+ hyperthreading). False for the physical usable CPUs.
147
+ :returns: the number of usable CPUs.
148
+ """
149
+ count = os.cpu_count() or 2
150
+ try:
151
+ count = min(count, len(os.sched_getaffinity(0)))
152
+ except AttributeError:
153
+ pass
154
+ try:
155
+ import psutil
156
+
157
+ count = min(count, psutil.cpu_count(logical))
158
+ except ImportError:
159
+ pass
160
+ return max(1, count)
161
+
162
+
163
+ def total_memory() -> int:
164
+ """
165
+ Get the total memory in the system. If this is in a container, try to
166
+ determine the memory available to the cgroup.
167
+
168
+ :returns: the available memory in bytes, or 8 GB if unknown.
169
+ """
170
+ mem = 0
171
+ if HAS_PSUTIL:
172
+ mem = psutil.virtual_memory().total
173
+ try:
174
+ cgroup = int(open('/sys/fs/cgroup/memory/memory.limit_in_bytes').read().strip())
175
+ if 1024 ** 3 <= cgroup < 1024 ** 4 and (mem is None or cgroup < mem):
176
+ mem = cgroup
177
+ except Exception:
178
+ pass
179
+ if mem:
180
+ return mem
181
+ return 8 * 1024 ** 3
{large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/base.py RENAMED
@@ -1965,7 +1965,7 @@ class TileSource(IPyLeafletMixin):
1965
1965
  image = None
1966
1966
  tiledimage = None
1967
1967
  if max_workers is not None and max_workers < 0:
1968
- max_workers = min(-max_workers, utilities.cpu_count(False))
1968
+ max_workers = min(-max_workers, config.cpu_count(False))
1969
1969
  with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as pool:
1970
1970
  futures = []
1971
1971
  for idx, frame in enumerate(frameList):
{large-image-1.28.3.dev14 → large-image-1.28.3.dev16}/large_image/tilesource/utilities.py RENAMED
@@ -1,6 +1,5 @@
1
1
  import io
2
2
  import math
3
- import os
4
3
  import threading
5
4
  import types
6
5
  import xml.etree.ElementTree
@@ -17,6 +16,8 @@ import PIL.ImageDraw
17
16
 
18
17
  from ..constants import dtypeToGValue
19
18
 
19
+ # This was exposed here, once.
20
+
20
21
  try:
21
22
  import simplejpeg
22
23
  except ImportError:
@@ -1213,32 +1214,6 @@ def histogramThreshold(histogram: Dict[str, Any], threshold: float, fromMax: boo
1213
1214
  return result
1214
1215
 
1215
1216
 
1216
- def cpu_count(logical: bool = True) -> int:
1217
- """
1218
- Get the usable CPU count. If psutil is available, it is used, since it can
1219
- determine the number of physical CPUS versus logical CPUs. This returns
1220
- the smaller of that value from psutil and the number of cpus allowed by the
1221
- os scheduler, which means that for physical requests (logical=False), the
1222
- returned value may be more the the number of physical cpus that are usable.
1223
-
1224
- :param logical: True to get the logical usable CPUs (which include
1225
- hyperthreading). False for the physical usable CPUs.
1226
- :returns: the number of usable CPUs.
1227
- """
1228
- count = os.cpu_count() or 2
1229
- try:
1230
- count = min(count, len(os.sched_getaffinity(0)))
1231
- except AttributeError:
1232
- pass
1233
- try:
1234
- import psutil
1235
-
1236
- count = min(count, psutil.cpu_count(logical))
1237
- except ImportError:
1238
- pass
1239
- return max(1, count)
1240
-
1241
-
1242
1217
  def addPILFormatsToOutputOptions() -> None:
1243
1218
  """
1244
1219
  Check PIL for available formats that be saved and add them to the lists of
{large-image-1.28.3.dev14 → large-image-1.28.3.dev16/large_image.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: large-image
3
- Version: 1.28.3.dev14
3
+ Version: 1.28.3.dev16
4
4
  Summary: Python modules to work with large, multiresolution images.
5
5
  Home-page: https://github.com/girder/large_image
6
6
  Author: Kitware, Inc.
@@ -26,7 +26,7 @@ Requires-Dist: typing-extensions
26
26
  Provides-Extra: memcached
27
27
  Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "memcached"
28
28
  Provides-Extra: converter
29
- Requires-Dist: large-image-converter>=1.28.3.dev14; extra == "converter"
29
+ Requires-Dist: large-image-converter>=1.28.3.dev16; extra == "converter"
30
30
  Provides-Extra: colormaps
31
31
  Requires-Dist: matplotlib; extra == "colormaps"
32
32
  Provides-Extra: tiledoutput
@@ -35,102 +35,102 @@ Provides-Extra: performance
35
35
  Requires-Dist: psutil>=4.2.0; extra == "performance"
36
36
  Requires-Dist: simplejpeg; extra == "performance"
37
37
  Provides-Extra: bioformats
38
- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "bioformats"
38
+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "bioformats"
39
39
  Provides-Extra: deepzoom
40
- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "deepzoom"
40
+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "deepzoom"
41
41
  Provides-Extra: dicom
42
- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "dicom"
42
+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "dicom"
43
43
  Provides-Extra: dummy
44
- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "dummy"
44
+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "dummy"
45
45
  Provides-Extra: gdal
46
- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "gdal"
46
+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "gdal"
47
47
  Provides-Extra: mapnik
48
- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "mapnik"
48
+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "mapnik"
49
49
  Provides-Extra: multi
50
- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "multi"
50
+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "multi"
51
51
  Provides-Extra: nd2
52
- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "nd2"
52
+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "nd2"
53
53
  Provides-Extra: ometiff
54
- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "ometiff"
54
+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "ometiff"
55
55
  Provides-Extra: openjpeg
56
- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "openjpeg"
56
+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "openjpeg"
57
57
  Provides-Extra: openslide
58
- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "openslide"
58
+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "openslide"
59
59
  Provides-Extra: pil
60
- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "pil"
60
+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "pil"
61
61
  Provides-Extra: rasterio
62
- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "rasterio"
62
+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "rasterio"
63
63
  Provides-Extra: test
64
- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "test"
64
+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "test"
65
65
  Provides-Extra: tiff
66
- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "tiff"
66
+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "tiff"
67
67
  Provides-Extra: tifffile
68
- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "tifffile"
68
+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "tifffile"
69
69
  Provides-Extra: vips
70
- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "vips"
70
+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "vips"
71
71
  Provides-Extra: zarr
72
- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "zarr"
72
+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "zarr"
73
73
  Provides-Extra: sources
74
- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "sources"
75
- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "sources"
76
- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "sources"
77
- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "sources"
78
- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "sources"
79
- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "sources"
80
- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "sources"
81
- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "sources"
82
- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "sources"
83
- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "sources"
84
- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "sources"
85
- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "sources"
86
- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "sources"
87
- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "sources"
88
- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "sources"
89
- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "sources"
90
- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "sources"
91
- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "sources"
74
+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "sources"
75
+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "sources"
76
+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "sources"
77
+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "sources"
78
+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "sources"
79
+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "sources"
80
+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "sources"
81
+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "sources"
82
+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "sources"
83
+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "sources"
84
+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "sources"
85
+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "sources"
86
+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "sources"
87
+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "sources"
88
+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "sources"
89
+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "sources"
90
+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "sources"
91
+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "sources"
92
92
  Provides-Extra: all
93
- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "all"
94
- Requires-Dist: large-image-source-rasterio>=1.28.3.dev14; extra == "all"
95
- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "all"
96
- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "all"
97
- Requires-Dist: large-image-source-dummy>=1.28.3.dev14; extra == "all"
98
- Requires-Dist: large-image-source-pil[all]>=1.28.3.dev14; extra == "all"
99
- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "all"
100
- Requires-Dist: large-image-source-ometiff>=1.28.3.dev14; extra == "all"
101
- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "all"
102
- Requires-Dist: large-image-converter>=1.28.3.dev14; extra == "all"
103
- Requires-Dist: large-image-source-gdal>=1.28.3.dev14; extra == "all"
104
- Requires-Dist: large-image-source-pil>=1.28.3.dev14; extra == "all"
105
- Requires-Dist: psutil>=4.2.0; extra == "all"
106
- Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev14; extra == "all"
107
- Requires-Dist: large-image-source-tiff>=1.28.3.dev14; extra == "all"
108
- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "all"
109
- Requires-Dist: large-image-source-vips>=1.28.3.dev14; extra == "all"
110
93
  Requires-Dist: matplotlib; extra == "all"
111
- Requires-Dist: large-image-source-openjpeg>=1.28.3.dev14; extra == "all"
112
- Requires-Dist: large-image-source-bioformats>=1.28.3.dev14; extra == "all"
113
- Requires-Dist: large-image-source-mapnik>=1.28.3.dev14; extra == "all"
114
- Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "all"
115
- Requires-Dist: simplejpeg; extra == "all"
116
- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "all"
94
+ Requires-Dist: large-image-source-gdal>=1.28.3.dev16; extra == "all"
95
+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "all"
96
+ Requires-Dist: large-image-source-bioformats>=1.28.3.dev16; extra == "all"
97
+ Requires-Dist: large-image-source-rasterio>=1.28.3.dev16; extra == "all"
98
+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "all"
99
+ Requires-Dist: large-image-source-mapnik>=1.28.3.dev16; extra == "all"
100
+ Requires-Dist: large-image-source-ometiff>=1.28.3.dev16; extra == "all"
101
+ Requires-Dist: large-image-source-multi[all]>=1.28.3.dev16; extra == "all"
102
+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "all"
103
+ Requires-Dist: large-image-source-tiff>=1.28.3.dev16; extra == "all"
104
+ Requires-Dist: large-image-source-openslide>=1.28.3.dev16; extra == "all"
117
105
  Requires-Dist: pyvips; extra == "all"
118
- Requires-Dist: large-image-source-multi[all]>=1.28.3.dev14; extra == "all"
119
- Requires-Dist: large-image-source-openslide>=1.28.3.dev14; extra == "all"
106
+ Requires-Dist: simplejpeg; extra == "all"
107
+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "all"
108
+ Requires-Dist: large-image-converter>=1.28.3.dev16; extra == "all"
109
+ Requires-Dist: large-image-source-pil>=1.28.3.dev16; extra == "all"
110
+ Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "all"
111
+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "all"
112
+ Requires-Dist: large-image-source-openjpeg>=1.28.3.dev16; extra == "all"
113
+ Requires-Dist: large-image-source-pil[all]>=1.28.3.dev16; extra == "all"
114
+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "all"
115
+ Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev16; extra == "all"
116
+ Requires-Dist: large-image-source-dummy>=1.28.3.dev16; extra == "all"
117
+ Requires-Dist: large-image-source-vips>=1.28.3.dev16; extra == "all"
118
+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "all"
119
+ Requires-Dist: psutil>=4.2.0; extra == "all"
120
120
  Provides-Extra: common
121
- Requires-Dist: large-image-source-zarr>=1.28.3.dev14; extra == "common"
122
- Requires-Dist: large-image-source-test>=1.28.3.dev14; extra == "common"
123
- Requires-Dist: large-image-source-nd2>=1.28.3.dev14; extra == "common"
124
121
  Requires-Dist: matplotlib; extra == "common"
125
- Requires-Dist: large-image-source-deepzoom>=1.28.3.dev14; extra == "common"
122
+ Requires-Dist: large-image-source-multi>=1.28.3.dev16; extra == "common"
123
+ Requires-Dist: large-image-source-dicom>=1.28.3.dev16; extra == "common"
126
124
  Requires-Dist: pylibmc>=1.5.1; platform_system != "Windows" and extra == "common"
127
- Requires-Dist: large-image-source-dicom>=1.28.3.dev14; extra == "common"
125
+ Requires-Dist: large-image-source-zarr>=1.28.3.dev16; extra == "common"
126
+ Requires-Dist: large-image-source-pil[all]>=1.28.3.dev16; extra == "common"
127
+ Requires-Dist: large-image-source-tifffile>=1.28.3.dev16; extra == "common"
128
+ Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev16; extra == "common"
129
+ Requires-Dist: large-image-source-deepzoom>=1.28.3.dev16; extra == "common"
130
+ Requires-Dist: large-image-source-test>=1.28.3.dev16; extra == "common"
128
131
  Requires-Dist: simplejpeg; extra == "common"
129
132
  Requires-Dist: psutil>=4.2.0; extra == "common"
130
- Requires-Dist: large-image-source-rasterio[all]>=1.28.3.dev14; extra == "common"
131
- Requires-Dist: large-image-source-multi>=1.28.3.dev14; extra == "common"
132
- Requires-Dist: large-image-source-pil[all]>=1.28.3.dev14; extra == "common"
133
- Requires-Dist: large-image-source-tifffile>=1.28.3.dev14; extra == "common"
133
+ Requires-Dist: large-image-source-nd2>=1.28.3.dev16; extra == "common"
134
134
 
135
135
  Large Image
136
136
  ===========
large-image-1.28.3.dev16/large_image.egg-info/requires.txt ADDED
@@ -0,0 +1,145 @@
1
+ cachetools
2
+ palettable
3
+ Pillow
4
+ numpy
5
+ typing-extensions
6
+
7
+ [all]
8
+ matplotlib
9
+ large-image-source-gdal>=1.28.3.dev16
10
+ large-image-source-multi>=1.28.3.dev16
11
+ large-image-source-bioformats>=1.28.3.dev16
12
+ large-image-source-rasterio>=1.28.3.dev16
13
+ large-image-source-zarr>=1.28.3.dev16
14
+ large-image-source-mapnik>=1.28.3.dev16
15
+ large-image-source-ometiff>=1.28.3.dev16
16
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37
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38
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39
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40
+
41
+ [colormaps]
42
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43
+
44
+ [common]
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57
+
58
+ [common:platform_system != "Windows"]
59
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+ [memcached]
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81
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+ [nd2]
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+ [openslide]
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+ large-image-source-openslide>=1.28.3.dev16
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+ large-image-source-nd2>=1.28.3.dev16
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129
+ [test]
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+ large-image-source-test>=1.28.3.dev16
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+
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+ [tiff]
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+ large-image-source-tiff>=1.28.3.dev16
134
+
135
+ [tifffile]
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+ large-image-source-tifffile>=1.28.3.dev16
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+ [tiledoutput]
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+ pyvips
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+
141
+ [vips]
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+ large-image-source-vips>=1.28.3.dev16
143
+
144
+ [zarr]
145
+ large-image-source-zarr>=1.28.3.dev16
large-image-1.28.3.dev14/large_image.egg-info/requires.txt DELETED
@@ -1,145 +0,0 @@
1
- cachetools
2
- palettable
3
- Pillow
4
- numpy
5
- typing-extensions
6
-
7
- [all]
8
- large-image-source-zarr>=1.28.3.dev14
9
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27
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28
- large-image-source-mapnik>=1.28.3.dev14
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30
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31
- pyvips
32
- large-image-source-multi[all]>=1.28.3.dev14
33
- large-image-source-openslide>=1.28.3.dev14
34
-
35
- [all:platform_system != "Windows"]
36
- pylibmc>=1.5.1
37
-
38
- [bioformats]
39
- large-image-source-bioformats>=1.28.3.dev14
40
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41
- [colormaps]
42
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43
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44
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58
- [common:platform_system != "Windows"]
59
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61
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63
-
64
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67
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70
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73
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75
-
76
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-
79
- [memcached]
80
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81
- [memcached:platform_system != "Windows"]
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83
-
84
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-
87
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-
90
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93
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96
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99
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106
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-
129
- [test]
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- large-image-source-test>=1.28.3.dev14
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-
132
- [tiff]
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-
135
- [tifffile]
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- large-image-source-tifffile>=1.28.3.dev14
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-
138
- [tiledoutput]
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- pyvips
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-
141
- [vips]
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- large-image-source-vips>=1.28.3.dev14
143
-
144
- [zarr]
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