large-image 1.27.5.dev69__tar.gz → 1.27.5.dev99__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {large-image-1.27.5.dev69/large_image.egg-info → large-image-1.27.5.dev99}/PKG-INFO +1 -1
- large-image-1.27.5.dev99/large_image/tilesource/resample.py +129 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99/large_image.egg-info}/PKG-INFO +1 -1
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image.egg-info/SOURCES.txt +1 -0
- large-image-1.27.5.dev99/large_image.egg-info/requires.txt +145 -0
- large-image-1.27.5.dev69/large_image.egg-info/requires.txt +0 -145
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/LICENSE +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/NOTICE +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/README.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/annotations.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/caching.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/conf.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/config_options.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/development.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/example_usage.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/formats.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/girder_annotation_config_options.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/girder_config_options.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/image_conversion.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/index.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/large_image_examples.ipynb +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/make_docs.sh +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/multi_source_specification.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/notebooks.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/static/custom.css +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/tilesource_options.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/docs/upgrade.rst +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/__init__.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/cache_util/__init__.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/cache_util/base.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/cache_util/cache.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/cache_util/cachefactory.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/cache_util/memcache.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/config.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/constants.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/exceptions.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/__init__.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/base.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/geo.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/jupyter.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/stylefuncs.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/tiledict.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/tileiterator.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image/tilesource/utilities.py +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image.egg-info/dependency_links.txt +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image.egg-info/not-zip-safe +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/large_image.egg-info/top_level.txt +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/setup.cfg +0 -0
- {large-image-1.27.5.dev69 → large-image-1.27.5.dev99}/setup.py +0 -0
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from enum import Enum
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from typing import Dict
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import numpy as np
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from PIL import Image
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class ResampleMethod(Enum):
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PIL_NEAREST = Image.Resampling.NEAREST # 0
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PIL_LANCZOS = Image.Resampling.LANCZOS # 1
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PIL_BILINEAR = Image.Resampling.BILINEAR # 2
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PIL_BICUBIC = Image.Resampling.BICUBIC # 3
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PIL_BOX = Image.Resampling.BOX # 4
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PIL_HAMMING = Image.Resampling.HAMMING # 5
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PIL_MAX_ENUM = 5
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NP_MEAN = 6
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NP_MEDIAN = 7
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NP_MODE = 8
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NP_MAX = 9
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NP_MIN = 10
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NP_NEAREST = 11
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NP_MAX_COLOR = 12
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NP_MIN_COLOR = 13
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def pilResize(
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tile: np.ndarray,
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new_shape: Dict,
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resample_method: ResampleMethod,
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) -> np.ndarray:
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# Only NEAREST works for 16 bit images
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img = Image.fromarray(tile)
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resized_img = img.resize(
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(new_shape['width'], new_shape['height']),
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resample=resample_method.value,
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)
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result = np.array(resized_img).astype(tile.dtype)
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return result
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def numpyResize(
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tile: np.ndarray,
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new_shape: Dict,
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resample_method: ResampleMethod,
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) -> np.ndarray:
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if resample_method == ResampleMethod.NP_NEAREST:
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return tile[::2, ::2]
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else:
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if tile.shape[0] % 2 != 0:
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tile = np.append(tile, np.expand_dims(tile[-1], axis=0), axis=0)
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if tile.shape[1] % 2 != 0:
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tile = np.append(tile, np.expand_dims(tile[:, -1], axis=1), axis=1)
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pixel_selection = None
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subarrays = np.asarray(
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[
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tile[0::2, 0::2],
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tile[1::2, 0::2],
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tile[0::2, 1::2],
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tile[1::2, 1::2],
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],
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)
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if resample_method == ResampleMethod.NP_MEAN:
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return np.mean(subarrays, axis=0).astype(tile.dtype)
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elif resample_method == ResampleMethod.NP_MEDIAN:
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return np.median(subarrays, axis=0).astype(tile.dtype)
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elif resample_method == ResampleMethod.NP_MAX:
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return np.max(subarrays, axis=0).astype(tile.dtype)
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elif resample_method == ResampleMethod.NP_MIN:
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return np.min(subarrays, axis=0).astype(tile.dtype)
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elif resample_method == ResampleMethod.NP_MAX_COLOR:
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summed = np.sum(subarrays, axis=3)
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pixel_selection = np.argmax(summed, axis=0)
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elif resample_method == ResampleMethod.NP_MIN_COLOR:
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summed = np.sum(subarrays, axis=3)
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pixel_selection = np.argmin(summed, axis=0)
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elif resample_method == ResampleMethod.NP_MODE:
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# if a pixel occurs twice in a set of four, it is a mode
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# if no mode, default to pixel 0. check for minimal matches 1=2, 1=3, 2=3
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pixel_selection = np.where(
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(
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(subarrays[1] == subarrays[2]).all(axis=2) |
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(subarrays[1] == subarrays[3]).all(axis=2)
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),
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1, np.where(
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(subarrays[2] == subarrays[3]).all(axis=2),
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2, 0,
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),
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)
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if pixel_selection is not None:
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if len(tile.shape) > 2:
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pixel_selection = np.expand_dims(pixel_selection, axis=2)
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pixel_selection = np.repeat(pixel_selection, tile.shape[2], axis=2)
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return np.choose(pixel_selection, subarrays).astype(tile.dtype)
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else:
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msg = f'Unknown resample method {resample_method}.'
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raise ValueError(msg)
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def downsampleTileHalfRes(
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tile: np.ndarray,
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resample_method: ResampleMethod,
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) -> np.ndarray:
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new_shape = {
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'height': (tile.shape[0] + 1) // 2,
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'width': (tile.shape[1] + 1) // 2,
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'bands': 1,
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}
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if len(tile.shape) > 2:
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new_shape['bands'] = tile.shape[-1]
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if resample_method.value <= ResampleMethod.PIL_MAX_ENUM.value:
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if new_shape['bands'] > 4:
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result = np.empty(
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(new_shape['height'], new_shape['width'], new_shape['bands']),
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dtype=tile.dtype,
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)
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for band_index in range(new_shape['bands']):
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result[(..., band_index)] = pilResize(
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tile[(..., band_index)],
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new_shape,
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resample_method,
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)
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return result
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else:
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return pilResize(tile, new_shape, resample_method)
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else:
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return numpyResize(tile, new_shape, resample_method)
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large_image/tilesource/base.py
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large_image/tilesource/geo.py
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large_image/tilesource/jupyter.py
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large_image/tilesource/resample.py
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large_image/tilesource/stylefuncs.py
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large_image/tilesource/tiledict.py
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large_image/tilesource/tileiterator.py
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cachetools
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palettable
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Pillow
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numpy
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typing-extensions
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[all]
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large-image-source-mapnik>=1.27.5.dev99
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large-image-source-rasterio>=1.27.5.dev99
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large-image-source-deepzoom>=1.27.5.dev99
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psutil>=4.2.0
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matplotlib
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large-image-source-multi[all]>=1.27.5.dev99
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large-image-source-dummy>=1.27.5.dev99
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large-image-source-vips>=1.27.5.dev99
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large-image-source-gdal>=1.27.5.dev99
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simplejpeg
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large-image-converter>=1.27.5.dev99
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pyvips
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large-image-source-test>=1.27.5.dev99
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large-image-source-multi>=1.27.5.dev99
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large-image-source-openslide>=1.27.5.dev99
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large-image-source-tifffile>=1.27.5.dev99
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large-image-source-ometiff>=1.27.5.dev99
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large-image-source-pil[all]>=1.27.5.dev99
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large-image-source-rasterio[all]>=1.27.5.dev99
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large-image-source-bioformats>=1.27.5.dev99
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large-image-source-zarr>=1.27.5.dev99
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large-image-source-nd2>=1.27.5.dev99
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large-image-source-dicom>=1.27.5.dev99
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large-image-source-openjpeg>=1.27.5.dev99
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large-image-source-tiff>=1.27.5.dev99
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large-image-source-pil>=1.27.5.dev99
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[all:platform_system != "Windows"]
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pylibmc>=1.5.1
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[bioformats]
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large-image-source-bioformats>=1.27.5.dev99
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[colormaps]
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matplotlib
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[common]
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large-image-source-test>=1.27.5.dev99
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large-image-source-multi>=1.27.5.dev99
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large-image-source-pil[all]>=1.27.5.dev99
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large-image-source-tifffile>=1.27.5.dev99
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large-image-source-rasterio[all]>=1.27.5.dev99
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large-image-source-zarr>=1.27.5.dev99
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large-image-source-nd2>=1.27.5.dev99
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large-image-source-dicom>=1.27.5.dev99
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large-image-source-deepzoom>=1.27.5.dev99
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psutil>=4.2.0
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matplotlib
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simplejpeg
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[common:platform_system != "Windows"]
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pylibmc>=1.5.1
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[converter]
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large-image-converter>=1.27.5.dev99
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[deepzoom]
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large-image-source-deepzoom>=1.27.5.dev99
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[dicom]
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large-image-source-dicom>=1.27.5.dev99
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[dummy]
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large-image-source-dummy>=1.27.5.dev99
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[gdal]
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large-image-source-gdal>=1.27.5.dev99
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[mapnik]
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large-image-source-mapnik>=1.27.5.dev99
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[memcached]
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[memcached:platform_system != "Windows"]
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pylibmc>=1.5.1
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[multi]
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large-image-source-multi>=1.27.5.dev99
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[nd2]
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large-image-source-nd2>=1.27.5.dev99
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[ometiff]
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large-image-source-ometiff>=1.27.5.dev99
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