large-image 1.27.5.dev65__tar.gz → 1.27.5.dev69__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (48) hide show
  1. {large-image-1.27.5.dev65/large_image.egg-info → large-image-1.27.5.dev69}/PKG-INFO +1 -1
  2. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/base.py +1 -1
  3. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/utilities.py +6 -1
  4. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69/large_image.egg-info}/PKG-INFO +1 -1
  5. large-image-1.27.5.dev69/large_image.egg-info/requires.txt +145 -0
  6. large-image-1.27.5.dev65/large_image.egg-info/requires.txt +0 -145
  7. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/LICENSE +0 -0
  8. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/NOTICE +0 -0
  9. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/README.rst +0 -0
  10. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/annotations.rst +0 -0
  11. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/caching.rst +0 -0
  12. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/conf.py +0 -0
  13. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/config_options.rst +0 -0
  14. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/development.rst +0 -0
  15. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/example_usage.rst +0 -0
  16. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/formats.rst +0 -0
  17. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/girder_annotation_config_options.rst +0 -0
  18. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/girder_config_options.rst +0 -0
  19. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/image_conversion.rst +0 -0
  20. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/index.rst +0 -0
  21. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/large_image_examples.ipynb +0 -0
  22. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/make_docs.sh +0 -0
  23. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/multi_source_specification.rst +0 -0
  24. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/notebooks.rst +0 -0
  25. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/static/custom.css +0 -0
  26. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/tilesource_options.rst +0 -0
  27. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/docs/upgrade.rst +0 -0
  28. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/__init__.py +0 -0
  29. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/cache_util/__init__.py +0 -0
  30. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/cache_util/base.py +0 -0
  31. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/cache_util/cache.py +0 -0
  32. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/cache_util/cachefactory.py +0 -0
  33. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/cache_util/memcache.py +0 -0
  34. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/config.py +0 -0
  35. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/constants.py +0 -0
  36. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/exceptions.py +0 -0
  37. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/__init__.py +0 -0
  38. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/geo.py +0 -0
  39. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/jupyter.py +0 -0
  40. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/stylefuncs.py +0 -0
  41. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/tiledict.py +0 -0
  42. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/tileiterator.py +0 -0
  43. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image.egg-info/SOURCES.txt +0 -0
  44. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image.egg-info/dependency_links.txt +0 -0
  45. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image.egg-info/not-zip-safe +0 -0
  46. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image.egg-info/top_level.txt +0 -0
  47. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/setup.cfg +0 -0
  48. {large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/setup.py +0 -0
{large-image-1.27.5.dev65/large_image.egg-info → large-image-1.27.5.dev69}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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1
  Metadata-Version: 2.1
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  Name: large-image
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- Version: 1.27.5.dev65
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+ Version: 1.27.5.dev69
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  Summary: Python modules to work with large, multiresolution images.
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5
  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
{large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/base.py RENAMED
@@ -1960,7 +1960,7 @@ class TileSource(IPyLeafletMixin):
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  image = None
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  tiledimage = None
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  if max_workers is not None and max_workers < 0:
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- max_workers = max(-max_workers, utilities.cpu_count(False))
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+ max_workers = min(-max_workers, utilities.cpu_count(False))
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  with concurrent.futures.ThreadPoolExecutor(max_workers=max_workers) as pool:
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  futures = []
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  for idx, frame in enumerate(frameList):
{large-image-1.27.5.dev65 → large-image-1.27.5.dev69}/large_image/tilesource/utilities.py RENAMED
@@ -815,7 +815,12 @@ def _addSubimageToImage(
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  dtype=subimage.dtype)
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  elif len(image.shape) != len(subimage.shape) or image.shape[-1] != subimage.shape[-1]:
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  image, subimage = _makeSameChannelDepth(image, subimage)
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- image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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+ if subimage.shape[-1] in {2, 4}:
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+ mask = (subimage[:, :, -1] > 0)[:, :, np.newaxis]
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = np.where(
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+ mask, subimage, image[y:y + subimage.shape[0], x:x + subimage.shape[1]])
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+ else:
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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  return image
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{large-image-1.27.5.dev65 → large-image-1.27.5.dev69/large_image.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: large-image
3
- Version: 1.27.5.dev65
3
+ Version: 1.27.5.dev69
4
4
  Summary: Python modules to work with large, multiresolution images.
5
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  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
large-image-1.27.5.dev69/large_image.egg-info/requires.txt ADDED
@@ -0,0 +1,145 @@
1
+ cachetools
2
+ palettable
3
+ Pillow
4
+ numpy
5
+ typing-extensions
6
+
7
+ [all]
8
+ large-image-source-mapnik>=1.27.5.dev69
9
+ psutil>=4.2.0
10
+ large-image-source-vips>=1.27.5.dev69
11
+ large-image-source-pil[all]>=1.27.5.dev69
12
+ large-image-source-rasterio[all]>=1.27.5.dev69
13
+ large-image-source-multi[all]>=1.27.5.dev69
14
+ large-image-source-dicom>=1.27.5.dev69
15
+ large-image-source-rasterio>=1.27.5.dev69
16
+ matplotlib
17
+ large-image-source-pil>=1.27.5.dev69
18
+ large-image-source-test>=1.27.5.dev69
19
+ large-image-source-nd2>=1.27.5.dev69
20
+ large-image-source-tiff>=1.27.5.dev69
21
+ large-image-converter>=1.27.5.dev69
22
+ pyvips
23
+ large-image-source-ometiff>=1.27.5.dev69
24
+ large-image-source-deepzoom>=1.27.5.dev69
25
+ large-image-source-openslide>=1.27.5.dev69
26
+ large-image-source-bioformats>=1.27.5.dev69
27
+ large-image-source-zarr>=1.27.5.dev69
28
+ simplejpeg
29
+ large-image-source-dummy>=1.27.5.dev69
30
+ large-image-source-multi>=1.27.5.dev69
31
+ large-image-source-gdal>=1.27.5.dev69
32
+ large-image-source-openjpeg>=1.27.5.dev69
33
+ large-image-source-tifffile>=1.27.5.dev69
34
+
35
+ [all:platform_system != "Windows"]
36
+ pylibmc>=1.5.1
37
+
38
+ [bioformats]
39
+ large-image-source-bioformats>=1.27.5.dev69
40
+
41
+ [colormaps]
42
+ matplotlib
43
+
44
+ [common]
45
+ psutil>=4.2.0
46
+ large-image-source-deepzoom>=1.27.5.dev69
47
+ large-image-source-test>=1.27.5.dev69
48
+ large-image-source-pil[all]>=1.27.5.dev69
49
+ large-image-source-rasterio[all]>=1.27.5.dev69
50
+ large-image-source-dicom>=1.27.5.dev69
51
+ large-image-source-zarr>=1.27.5.dev69
52
+ simplejpeg
53
+ matplotlib
54
+ large-image-source-multi>=1.27.5.dev69
55
+ large-image-source-nd2>=1.27.5.dev69
56
+ large-image-source-tifffile>=1.27.5.dev69
57
+
58
+ [common:platform_system != "Windows"]
59
+ pylibmc>=1.5.1
60
+
61
+ [converter]
62
+ large-image-converter>=1.27.5.dev69
63
+
64
+ [deepzoom]
65
+ large-image-source-deepzoom>=1.27.5.dev69
66
+
67
+ [dicom]
68
+ large-image-source-dicom>=1.27.5.dev69
69
+
70
+ [dummy]
71
+ large-image-source-dummy>=1.27.5.dev69
72
+
73
+ [gdal]
74
+ large-image-source-gdal>=1.27.5.dev69
75
+
76
+ [mapnik]
77
+ large-image-source-mapnik>=1.27.5.dev69
78
+
79
+ [memcached]
80
+
81
+ [memcached:platform_system != "Windows"]
82
+ pylibmc>=1.5.1
83
+
84
+ [multi]
85
+ large-image-source-multi>=1.27.5.dev69
86
+
87
+ [nd2]
88
+ large-image-source-nd2>=1.27.5.dev69
89
+
90
+ [ometiff]
91
+ large-image-source-ometiff>=1.27.5.dev69
92
+
93
+ [openjpeg]
94
+ large-image-source-openjpeg>=1.27.5.dev69
95
+
96
+ [openslide]
97
+ large-image-source-openslide>=1.27.5.dev69
98
+
99
+ [performance]
100
+ psutil>=4.2.0
101
+ simplejpeg
102
+
103
+ [pil]
104
+ large-image-source-pil>=1.27.5.dev69
105
+
106
+ [rasterio]
107
+ large-image-source-rasterio>=1.27.5.dev69
108
+
109
+ [sources]
110
+ large-image-source-mapnik>=1.27.5.dev69
111
+ large-image-source-vips>=1.27.5.dev69
112
+ large-image-source-ometiff>=1.27.5.dev69
113
+ large-image-source-deepzoom>=1.27.5.dev69
114
+ large-image-source-test>=1.27.5.dev69
115
+ large-image-source-tiff>=1.27.5.dev69
116
+ large-image-source-openslide>=1.27.5.dev69
117
+ large-image-source-dicom>=1.27.5.dev69
118
+ large-image-source-bioformats>=1.27.5.dev69
119
+ large-image-source-rasterio>=1.27.5.dev69
120
+ large-image-source-zarr>=1.27.5.dev69
121
+ large-image-source-dummy>=1.27.5.dev69
122
+ large-image-source-pil>=1.27.5.dev69
123
+ large-image-source-multi>=1.27.5.dev69
124
+ large-image-source-nd2>=1.27.5.dev69
125
+ large-image-source-gdal>=1.27.5.dev69
126
+ large-image-source-openjpeg>=1.27.5.dev69
127
+ large-image-source-tifffile>=1.27.5.dev69
128
+
129
+ [test]
130
+ large-image-source-test>=1.27.5.dev69
131
+
132
+ [tiff]
133
+ large-image-source-tiff>=1.27.5.dev69
134
+
135
+ [tifffile]
136
+ large-image-source-tifffile>=1.27.5.dev69
137
+
138
+ [tiledoutput]
139
+ pyvips
140
+
141
+ [vips]
142
+ large-image-source-vips>=1.27.5.dev69
143
+
144
+ [zarr]
145
+ large-image-source-zarr>=1.27.5.dev69
large-image-1.27.5.dev65/large_image.egg-info/requires.txt DELETED
@@ -1,145 +0,0 @@
1
- cachetools
2
- palettable
3
- Pillow
4
- numpy
5
- typing-extensions
6
-
7
- [all]
8
- large-image-source-pil>=1.27.5.dev65
9
- large-image-source-openslide>=1.27.5.dev65
10
- pyvips
11
- matplotlib
12
- large-image-source-ometiff>=1.27.5.dev65
13
- large-image-source-multi[all]>=1.27.5.dev65
14
- large-image-source-rasterio[all]>=1.27.5.dev65
15
- large-image-source-rasterio>=1.27.5.dev65
16
- large-image-converter>=1.27.5.dev65
17
- large-image-source-test>=1.27.5.dev65
18
- simplejpeg
19
- large-image-source-mapnik>=1.27.5.dev65
20
- large-image-source-dicom>=1.27.5.dev65
21
- large-image-source-bioformats>=1.27.5.dev65
22
- large-image-source-vips>=1.27.5.dev65
23
- large-image-source-multi>=1.27.5.dev65
24
- large-image-source-gdal>=1.27.5.dev65
25
- large-image-source-pil[all]>=1.27.5.dev65
26
- large-image-source-tiff>=1.27.5.dev65
27
- large-image-source-openjpeg>=1.27.5.dev65
28
- large-image-source-nd2>=1.27.5.dev65
29
- large-image-source-dummy>=1.27.5.dev65
30
- large-image-source-deepzoom>=1.27.5.dev65
31
- psutil>=4.2.0
32
- large-image-source-zarr>=1.27.5.dev65
33
- large-image-source-tifffile>=1.27.5.dev65
34
-
35
- [all:platform_system != "Windows"]
36
- pylibmc>=1.5.1
37
-
38
- [bioformats]
39
- large-image-source-bioformats>=1.27.5.dev65
40
-
41
- [colormaps]
42
- matplotlib
43
-
44
- [common]
45
- large-image-source-dicom>=1.27.5.dev65
46
- large-image-source-multi>=1.27.5.dev65
47
- matplotlib
48
- large-image-source-pil[all]>=1.27.5.dev65
49
- large-image-source-rasterio[all]>=1.27.5.dev65
50
- large-image-source-nd2>=1.27.5.dev65
51
- large-image-source-deepzoom>=1.27.5.dev65
52
- large-image-source-test>=1.27.5.dev65
53
- psutil>=4.2.0
54
- simplejpeg
55
- large-image-source-zarr>=1.27.5.dev65
56
- large-image-source-tifffile>=1.27.5.dev65
57
-
58
- [common:platform_system != "Windows"]
59
- pylibmc>=1.5.1
60
-
61
- [converter]
62
- large-image-converter>=1.27.5.dev65
63
-
64
- [deepzoom]
65
- large-image-source-deepzoom>=1.27.5.dev65
66
-
67
- [dicom]
68
- large-image-source-dicom>=1.27.5.dev65
69
-
70
- [dummy]
71
- large-image-source-dummy>=1.27.5.dev65
72
-
73
- [gdal]
74
- large-image-source-gdal>=1.27.5.dev65
75
-
76
- [mapnik]
77
- large-image-source-mapnik>=1.27.5.dev65
78
-
79
- [memcached]
80
-
81
- [memcached:platform_system != "Windows"]
82
- pylibmc>=1.5.1
83
-
84
- [multi]
85
- large-image-source-multi>=1.27.5.dev65
86
-
87
- [nd2]
88
- large-image-source-nd2>=1.27.5.dev65
89
-
90
- [ometiff]
91
- large-image-source-ometiff>=1.27.5.dev65
92
-
93
- [openjpeg]
94
- large-image-source-openjpeg>=1.27.5.dev65
95
-
96
- [openslide]
97
- large-image-source-openslide>=1.27.5.dev65
98
-
99
- [performance]
100
- psutil>=4.2.0
101
- simplejpeg
102
-
103
- [pil]
104
- large-image-source-pil>=1.27.5.dev65
105
-
106
- [rasterio]
107
- large-image-source-rasterio>=1.27.5.dev65
108
-
109
- [sources]
110
- large-image-source-dicom>=1.27.5.dev65
111
- large-image-source-pil>=1.27.5.dev65
112
- large-image-source-bioformats>=1.27.5.dev65
113
- large-image-source-openslide>=1.27.5.dev65
114
- large-image-source-vips>=1.27.5.dev65
115
- large-image-source-multi>=1.27.5.dev65
116
- large-image-source-ometiff>=1.27.5.dev65
117
- large-image-source-zarr>=1.27.5.dev65
118
- large-image-source-gdal>=1.27.5.dev65
119
- large-image-source-tiff>=1.27.5.dev65
120
- large-image-source-openjpeg>=1.27.5.dev65
121
- large-image-source-nd2>=1.27.5.dev65
122
- large-image-source-dummy>=1.27.5.dev65
123
- large-image-source-rasterio>=1.27.5.dev65
124
- large-image-source-deepzoom>=1.27.5.dev65
125
- large-image-source-test>=1.27.5.dev65
126
- large-image-source-tifffile>=1.27.5.dev65
127
- large-image-source-mapnik>=1.27.5.dev65
128
-
129
- [test]
130
- large-image-source-test>=1.27.5.dev65
131
-
132
- [tiff]
133
- large-image-source-tiff>=1.27.5.dev65
134
-
135
- [tifffile]
136
- large-image-source-tifffile>=1.27.5.dev65
137
-
138
- [tiledoutput]
139
- pyvips
140
-
141
- [vips]
142
- large-image-source-vips>=1.27.5.dev65
143
-
144
- [zarr]
145
- large-image-source-zarr>=1.27.5.dev65