large-image 1.27.5.dev65__tar.gz → 1.27.5.dev67__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (48) hide show
  1. {large-image-1.27.5.dev65/large_image.egg-info → large-image-1.27.5.dev67}/PKG-INFO +1 -1
  2. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/utilities.py +6 -1
  3. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67/large_image.egg-info}/PKG-INFO +1 -1
  4. large-image-1.27.5.dev67/large_image.egg-info/requires.txt +145 -0
  5. large-image-1.27.5.dev65/large_image.egg-info/requires.txt +0 -145
  6. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/LICENSE +0 -0
  7. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/NOTICE +0 -0
  8. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/README.rst +0 -0
  9. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/annotations.rst +0 -0
  10. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/caching.rst +0 -0
  11. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/conf.py +0 -0
  12. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/config_options.rst +0 -0
  13. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/development.rst +0 -0
  14. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/example_usage.rst +0 -0
  15. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/formats.rst +0 -0
  16. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/girder_annotation_config_options.rst +0 -0
  17. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/girder_config_options.rst +0 -0
  18. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/image_conversion.rst +0 -0
  19. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/index.rst +0 -0
  20. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/large_image_examples.ipynb +0 -0
  21. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/make_docs.sh +0 -0
  22. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/multi_source_specification.rst +0 -0
  23. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/notebooks.rst +0 -0
  24. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/static/custom.css +0 -0
  25. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/tilesource_options.rst +0 -0
  26. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/docs/upgrade.rst +0 -0
  27. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/__init__.py +0 -0
  28. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/cache_util/__init__.py +0 -0
  29. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/cache_util/base.py +0 -0
  30. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/cache_util/cache.py +0 -0
  31. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/cache_util/cachefactory.py +0 -0
  32. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/cache_util/memcache.py +0 -0
  33. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/config.py +0 -0
  34. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/constants.py +0 -0
  35. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/exceptions.py +0 -0
  36. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/__init__.py +0 -0
  37. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/base.py +0 -0
  38. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/geo.py +0 -0
  39. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/jupyter.py +0 -0
  40. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/stylefuncs.py +0 -0
  41. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/tiledict.py +0 -0
  42. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/tileiterator.py +0 -0
  43. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image.egg-info/SOURCES.txt +0 -0
  44. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image.egg-info/dependency_links.txt +0 -0
  45. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image.egg-info/not-zip-safe +0 -0
  46. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image.egg-info/top_level.txt +0 -0
  47. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/setup.cfg +0 -0
  48. {large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/setup.py +0 -0
{large-image-1.27.5.dev65/large_image.egg-info → large-image-1.27.5.dev67}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: large-image
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- Version: 1.27.5.dev65
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+ Version: 1.27.5.dev67
4
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  Summary: Python modules to work with large, multiresolution images.
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5
  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
{large-image-1.27.5.dev65 → large-image-1.27.5.dev67}/large_image/tilesource/utilities.py RENAMED
@@ -815,7 +815,12 @@ def _addSubimageToImage(
815
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  dtype=subimage.dtype)
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  elif len(image.shape) != len(subimage.shape) or image.shape[-1] != subimage.shape[-1]:
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  image, subimage = _makeSameChannelDepth(image, subimage)
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- image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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+ if subimage.shape[-1] in {2, 4}:
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+ mask = (subimage[:, :, -1] > 0)[:, :, np.newaxis]
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = np.where(
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+ mask, subimage, image[y:y + subimage.shape[0], x:x + subimage.shape[1]])
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+ else:
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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  return image
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{large-image-1.27.5.dev65 → large-image-1.27.5.dev67/large_image.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: large-image
3
- Version: 1.27.5.dev65
3
+ Version: 1.27.5.dev67
4
4
  Summary: Python modules to work with large, multiresolution images.
5
5
  Home-page: https://github.com/girder/large_image
6
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  Author: Kitware, Inc.
large-image-1.27.5.dev67/large_image.egg-info/requires.txt ADDED
@@ -0,0 +1,145 @@
1
+ cachetools
2
+ palettable
3
+ Pillow
4
+ numpy
5
+ typing-extensions
6
+
7
+ [all]
8
+ large-image-source-vips>=1.27.5.dev67
9
+ large-image-source-ometiff>=1.27.5.dev67
10
+ large-image-source-zarr>=1.27.5.dev67
11
+ large-image-source-pil>=1.27.5.dev67
12
+ psutil>=4.2.0
13
+ large-image-source-rasterio>=1.27.5.dev67
14
+ large-image-source-bioformats>=1.27.5.dev67
15
+ large-image-source-dummy>=1.27.5.dev67
16
+ large-image-converter>=1.27.5.dev67
17
+ simplejpeg
18
+ large-image-source-gdal>=1.27.5.dev67
19
+ large-image-source-openjpeg>=1.27.5.dev67
20
+ pyvips
21
+ large-image-source-multi[all]>=1.27.5.dev67
22
+ large-image-source-rasterio[all]>=1.27.5.dev67
23
+ large-image-source-dicom>=1.27.5.dev67
24
+ large-image-source-multi>=1.27.5.dev67
25
+ large-image-source-tifffile>=1.27.5.dev67
26
+ large-image-source-test>=1.27.5.dev67
27
+ large-image-source-mapnik>=1.27.5.dev67
28
+ large-image-source-nd2>=1.27.5.dev67
29
+ large-image-source-openslide>=1.27.5.dev67
30
+ large-image-source-deepzoom>=1.27.5.dev67
31
+ large-image-source-pil[all]>=1.27.5.dev67
32
+ matplotlib
33
+ large-image-source-tiff>=1.27.5.dev67
34
+
35
+ [all:platform_system != "Windows"]
36
+ pylibmc>=1.5.1
37
+
38
+ [bioformats]
39
+ large-image-source-bioformats>=1.27.5.dev67
40
+
41
+ [colormaps]
42
+ matplotlib
43
+
44
+ [common]
45
+ large-image-source-rasterio[all]>=1.27.5.dev67
46
+ large-image-source-zarr>=1.27.5.dev67
47
+ large-image-source-dicom>=1.27.5.dev67
48
+ psutil>=4.2.0
49
+ large-image-source-multi>=1.27.5.dev67
50
+ large-image-source-test>=1.27.5.dev67
51
+ large-image-source-tifffile>=1.27.5.dev67
52
+ simplejpeg
53
+ large-image-source-nd2>=1.27.5.dev67
54
+ large-image-source-deepzoom>=1.27.5.dev67
55
+ large-image-source-pil[all]>=1.27.5.dev67
56
+ matplotlib
57
+
58
+ [common:platform_system != "Windows"]
59
+ pylibmc>=1.5.1
60
+
61
+ [converter]
62
+ large-image-converter>=1.27.5.dev67
63
+
64
+ [deepzoom]
65
+ large-image-source-deepzoom>=1.27.5.dev67
66
+
67
+ [dicom]
68
+ large-image-source-dicom>=1.27.5.dev67
69
+
70
+ [dummy]
71
+ large-image-source-dummy>=1.27.5.dev67
72
+
73
+ [gdal]
74
+ large-image-source-gdal>=1.27.5.dev67
75
+
76
+ [mapnik]
77
+ large-image-source-mapnik>=1.27.5.dev67
78
+
79
+ [memcached]
80
+
81
+ [memcached:platform_system != "Windows"]
82
+ pylibmc>=1.5.1
83
+
84
+ [multi]
85
+ large-image-source-multi>=1.27.5.dev67
86
+
87
+ [nd2]
88
+ large-image-source-nd2>=1.27.5.dev67
89
+
90
+ [ometiff]
91
+ large-image-source-ometiff>=1.27.5.dev67
92
+
93
+ [openjpeg]
94
+ large-image-source-openjpeg>=1.27.5.dev67
95
+
96
+ [openslide]
97
+ large-image-source-openslide>=1.27.5.dev67
98
+
99
+ [performance]
100
+ psutil>=4.2.0
101
+ simplejpeg
102
+
103
+ [pil]
104
+ large-image-source-pil>=1.27.5.dev67
105
+
106
+ [rasterio]
107
+ large-image-source-rasterio>=1.27.5.dev67
108
+
109
+ [sources]
110
+ large-image-source-vips>=1.27.5.dev67
111
+ large-image-source-zarr>=1.27.5.dev67
112
+ large-image-source-dicom>=1.27.5.dev67
113
+ large-image-source-multi>=1.27.5.dev67
114
+ large-image-source-pil>=1.27.5.dev67
115
+ large-image-source-test>=1.27.5.dev67
116
+ large-image-source-tifffile>=1.27.5.dev67
117
+ large-image-source-bioformats>=1.27.5.dev67
118
+ large-image-source-dummy>=1.27.5.dev67
119
+ large-image-source-mapnik>=1.27.5.dev67
120
+ large-image-source-openslide>=1.27.5.dev67
121
+ large-image-source-tiff>=1.27.5.dev67
122
+ large-image-source-gdal>=1.27.5.dev67
123
+ large-image-source-nd2>=1.27.5.dev67
124
+ large-image-source-openjpeg>=1.27.5.dev67
125
+ large-image-source-deepzoom>=1.27.5.dev67
126
+ large-image-source-rasterio>=1.27.5.dev67
127
+ large-image-source-ometiff>=1.27.5.dev67
128
+
129
+ [test]
130
+ large-image-source-test>=1.27.5.dev67
131
+
132
+ [tiff]
133
+ large-image-source-tiff>=1.27.5.dev67
134
+
135
+ [tifffile]
136
+ large-image-source-tifffile>=1.27.5.dev67
137
+
138
+ [tiledoutput]
139
+ pyvips
140
+
141
+ [vips]
142
+ large-image-source-vips>=1.27.5.dev67
143
+
144
+ [zarr]
145
+ large-image-source-zarr>=1.27.5.dev67
large-image-1.27.5.dev65/large_image.egg-info/requires.txt DELETED
@@ -1,145 +0,0 @@
1
- cachetools
2
- palettable
3
- Pillow
4
- numpy
5
- typing-extensions
6
-
7
- [all]
8
- large-image-source-pil>=1.27.5.dev65
9
- large-image-source-openslide>=1.27.5.dev65
10
- pyvips
11
- matplotlib
12
- large-image-source-ometiff>=1.27.5.dev65
13
- large-image-source-multi[all]>=1.27.5.dev65
14
- large-image-source-rasterio[all]>=1.27.5.dev65
15
- large-image-source-rasterio>=1.27.5.dev65
16
- large-image-converter>=1.27.5.dev65
17
- large-image-source-test>=1.27.5.dev65
18
- simplejpeg
19
- large-image-source-mapnik>=1.27.5.dev65
20
- large-image-source-dicom>=1.27.5.dev65
21
- large-image-source-bioformats>=1.27.5.dev65
22
- large-image-source-vips>=1.27.5.dev65
23
- large-image-source-multi>=1.27.5.dev65
24
- large-image-source-gdal>=1.27.5.dev65
25
- large-image-source-pil[all]>=1.27.5.dev65
26
- large-image-source-tiff>=1.27.5.dev65
27
- large-image-source-openjpeg>=1.27.5.dev65
28
- large-image-source-nd2>=1.27.5.dev65
29
- large-image-source-dummy>=1.27.5.dev65
30
- large-image-source-deepzoom>=1.27.5.dev65
31
- psutil>=4.2.0
32
- large-image-source-zarr>=1.27.5.dev65
33
- large-image-source-tifffile>=1.27.5.dev65
34
-
35
- [all:platform_system != "Windows"]
36
- pylibmc>=1.5.1
37
-
38
- [bioformats]
39
- large-image-source-bioformats>=1.27.5.dev65
40
-
41
- [colormaps]
42
- matplotlib
43
-
44
- [common]
45
- large-image-source-dicom>=1.27.5.dev65
46
- large-image-source-multi>=1.27.5.dev65
47
- matplotlib
48
- large-image-source-pil[all]>=1.27.5.dev65
49
- large-image-source-rasterio[all]>=1.27.5.dev65
50
- large-image-source-nd2>=1.27.5.dev65
51
- large-image-source-deepzoom>=1.27.5.dev65
52
- large-image-source-test>=1.27.5.dev65
53
- psutil>=4.2.0
54
- simplejpeg
55
- large-image-source-zarr>=1.27.5.dev65
56
- large-image-source-tifffile>=1.27.5.dev65
57
-
58
- [common:platform_system != "Windows"]
59
- pylibmc>=1.5.1
60
-
61
- [converter]
62
- large-image-converter>=1.27.5.dev65
63
-
64
- [deepzoom]
65
- large-image-source-deepzoom>=1.27.5.dev65
66
-
67
- [dicom]
68
- large-image-source-dicom>=1.27.5.dev65
69
-
70
- [dummy]
71
- large-image-source-dummy>=1.27.5.dev65
72
-
73
- [gdal]
74
- large-image-source-gdal>=1.27.5.dev65
75
-
76
- [mapnik]
77
- large-image-source-mapnik>=1.27.5.dev65
78
-
79
- [memcached]
80
-
81
- [memcached:platform_system != "Windows"]
82
- pylibmc>=1.5.1
83
-
84
- [multi]
85
- large-image-source-multi>=1.27.5.dev65
86
-
87
- [nd2]
88
- large-image-source-nd2>=1.27.5.dev65
89
-
90
- [ometiff]
91
- large-image-source-ometiff>=1.27.5.dev65
92
-
93
- [openjpeg]
94
- large-image-source-openjpeg>=1.27.5.dev65
95
-
96
- [openslide]
97
- large-image-source-openslide>=1.27.5.dev65
98
-
99
- [performance]
100
- psutil>=4.2.0
101
- simplejpeg
102
-
103
- [pil]
104
- large-image-source-pil>=1.27.5.dev65
105
-
106
- [rasterio]
107
- large-image-source-rasterio>=1.27.5.dev65
108
-
109
- [sources]
110
- large-image-source-dicom>=1.27.5.dev65
111
- large-image-source-pil>=1.27.5.dev65
112
- large-image-source-bioformats>=1.27.5.dev65
113
- large-image-source-openslide>=1.27.5.dev65
114
- large-image-source-vips>=1.27.5.dev65
115
- large-image-source-multi>=1.27.5.dev65
116
- large-image-source-ometiff>=1.27.5.dev65
117
- large-image-source-zarr>=1.27.5.dev65
118
- large-image-source-gdal>=1.27.5.dev65
119
- large-image-source-tiff>=1.27.5.dev65
120
- large-image-source-openjpeg>=1.27.5.dev65
121
- large-image-source-nd2>=1.27.5.dev65
122
- large-image-source-dummy>=1.27.5.dev65
123
- large-image-source-rasterio>=1.27.5.dev65
124
- large-image-source-deepzoom>=1.27.5.dev65
125
- large-image-source-test>=1.27.5.dev65
126
- large-image-source-tifffile>=1.27.5.dev65
127
- large-image-source-mapnik>=1.27.5.dev65
128
-
129
- [test]
130
- large-image-source-test>=1.27.5.dev65
131
-
132
- [tiff]
133
- large-image-source-tiff>=1.27.5.dev65
134
-
135
- [tifffile]
136
- large-image-source-tifffile>=1.27.5.dev65
137
-
138
- [tiledoutput]
139
- pyvips
140
-
141
- [vips]
142
- large-image-source-vips>=1.27.5.dev65
143
-
144
- [zarr]
145
- large-image-source-zarr>=1.27.5.dev65