large-image 1.27.5.dev63__tar.gz → 1.27.5.dev67__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (48) hide show
  1. {large-image-1.27.5.dev63/large_image.egg-info → large-image-1.27.5.dev67}/PKG-INFO +1 -1
  2. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/utilities.py +6 -1
  3. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67/large_image.egg-info}/PKG-INFO +1 -1
  4. large-image-1.27.5.dev67/large_image.egg-info/requires.txt +145 -0
  5. large-image-1.27.5.dev63/large_image.egg-info/requires.txt +0 -145
  6. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/LICENSE +0 -0
  7. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/NOTICE +0 -0
  8. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/README.rst +0 -0
  9. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/annotations.rst +0 -0
  10. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/caching.rst +0 -0
  11. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/conf.py +0 -0
  12. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/config_options.rst +0 -0
  13. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/development.rst +0 -0
  14. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/example_usage.rst +0 -0
  15. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/formats.rst +0 -0
  16. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/girder_annotation_config_options.rst +0 -0
  17. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/girder_config_options.rst +0 -0
  18. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/image_conversion.rst +0 -0
  19. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/index.rst +0 -0
  20. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/large_image_examples.ipynb +0 -0
  21. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/make_docs.sh +0 -0
  22. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/multi_source_specification.rst +0 -0
  23. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/notebooks.rst +0 -0
  24. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/static/custom.css +0 -0
  25. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/tilesource_options.rst +0 -0
  26. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/docs/upgrade.rst +0 -0
  27. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/__init__.py +0 -0
  28. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/cache_util/__init__.py +0 -0
  29. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/cache_util/base.py +0 -0
  30. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/cache_util/cache.py +0 -0
  31. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/cache_util/cachefactory.py +0 -0
  32. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/cache_util/memcache.py +0 -0
  33. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/config.py +0 -0
  34. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/constants.py +0 -0
  35. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/exceptions.py +0 -0
  36. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/__init__.py +0 -0
  37. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/base.py +0 -0
  38. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/geo.py +0 -0
  39. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/jupyter.py +0 -0
  40. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/stylefuncs.py +0 -0
  41. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/tiledict.py +0 -0
  42. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/tileiterator.py +0 -0
  43. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image.egg-info/SOURCES.txt +0 -0
  44. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image.egg-info/dependency_links.txt +0 -0
  45. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image.egg-info/not-zip-safe +0 -0
  46. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image.egg-info/top_level.txt +0 -0
  47. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/setup.cfg +0 -0
  48. {large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/setup.py +0 -0
{large-image-1.27.5.dev63/large_image.egg-info → large-image-1.27.5.dev67}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: large-image
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- Version: 1.27.5.dev63
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+ Version: 1.27.5.dev67
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  Summary: Python modules to work with large, multiresolution images.
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  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
{large-image-1.27.5.dev63 → large-image-1.27.5.dev67}/large_image/tilesource/utilities.py RENAMED
@@ -815,7 +815,12 @@ def _addSubimageToImage(
815
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  dtype=subimage.dtype)
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  elif len(image.shape) != len(subimage.shape) or image.shape[-1] != subimage.shape[-1]:
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  image, subimage = _makeSameChannelDepth(image, subimage)
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- image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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+ if subimage.shape[-1] in {2, 4}:
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+ mask = (subimage[:, :, -1] > 0)[:, :, np.newaxis]
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = np.where(
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+ mask, subimage, image[y:y + subimage.shape[0], x:x + subimage.shape[1]])
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+ else:
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+ image[y:y + subimage.shape[0], x:x + subimage.shape[1]] = subimage
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  return image
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{large-image-1.27.5.dev63 → large-image-1.27.5.dev67/large_image.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: large-image
3
- Version: 1.27.5.dev63
3
+ Version: 1.27.5.dev67
4
4
  Summary: Python modules to work with large, multiresolution images.
5
5
  Home-page: https://github.com/girder/large_image
6
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  Author: Kitware, Inc.
large-image-1.27.5.dev67/large_image.egg-info/requires.txt ADDED
@@ -0,0 +1,145 @@
1
+ cachetools
2
+ palettable
3
+ Pillow
4
+ numpy
5
+ typing-extensions
6
+
7
+ [all]
8
+ large-image-source-vips>=1.27.5.dev67
9
+ large-image-source-ometiff>=1.27.5.dev67
10
+ large-image-source-zarr>=1.27.5.dev67
11
+ large-image-source-pil>=1.27.5.dev67
12
+ psutil>=4.2.0
13
+ large-image-source-rasterio>=1.27.5.dev67
14
+ large-image-source-bioformats>=1.27.5.dev67
15
+ large-image-source-dummy>=1.27.5.dev67
16
+ large-image-converter>=1.27.5.dev67
17
+ simplejpeg
18
+ large-image-source-gdal>=1.27.5.dev67
19
+ large-image-source-openjpeg>=1.27.5.dev67
20
+ pyvips
21
+ large-image-source-multi[all]>=1.27.5.dev67
22
+ large-image-source-rasterio[all]>=1.27.5.dev67
23
+ large-image-source-dicom>=1.27.5.dev67
24
+ large-image-source-multi>=1.27.5.dev67
25
+ large-image-source-tifffile>=1.27.5.dev67
26
+ large-image-source-test>=1.27.5.dev67
27
+ large-image-source-mapnik>=1.27.5.dev67
28
+ large-image-source-nd2>=1.27.5.dev67
29
+ large-image-source-openslide>=1.27.5.dev67
30
+ large-image-source-deepzoom>=1.27.5.dev67
31
+ large-image-source-pil[all]>=1.27.5.dev67
32
+ matplotlib
33
+ large-image-source-tiff>=1.27.5.dev67
34
+
35
+ [all:platform_system != "Windows"]
36
+ pylibmc>=1.5.1
37
+
38
+ [bioformats]
39
+ large-image-source-bioformats>=1.27.5.dev67
40
+
41
+ [colormaps]
42
+ matplotlib
43
+
44
+ [common]
45
+ large-image-source-rasterio[all]>=1.27.5.dev67
46
+ large-image-source-zarr>=1.27.5.dev67
47
+ large-image-source-dicom>=1.27.5.dev67
48
+ psutil>=4.2.0
49
+ large-image-source-multi>=1.27.5.dev67
50
+ large-image-source-test>=1.27.5.dev67
51
+ large-image-source-tifffile>=1.27.5.dev67
52
+ simplejpeg
53
+ large-image-source-nd2>=1.27.5.dev67
54
+ large-image-source-deepzoom>=1.27.5.dev67
55
+ large-image-source-pil[all]>=1.27.5.dev67
56
+ matplotlib
57
+
58
+ [common:platform_system != "Windows"]
59
+ pylibmc>=1.5.1
60
+
61
+ [converter]
62
+ large-image-converter>=1.27.5.dev67
63
+
64
+ [deepzoom]
65
+ large-image-source-deepzoom>=1.27.5.dev67
66
+
67
+ [dicom]
68
+ large-image-source-dicom>=1.27.5.dev67
69
+
70
+ [dummy]
71
+ large-image-source-dummy>=1.27.5.dev67
72
+
73
+ [gdal]
74
+ large-image-source-gdal>=1.27.5.dev67
75
+
76
+ [mapnik]
77
+ large-image-source-mapnik>=1.27.5.dev67
78
+
79
+ [memcached]
80
+
81
+ [memcached:platform_system != "Windows"]
82
+ pylibmc>=1.5.1
83
+
84
+ [multi]
85
+ large-image-source-multi>=1.27.5.dev67
86
+
87
+ [nd2]
88
+ large-image-source-nd2>=1.27.5.dev67
89
+
90
+ [ometiff]
91
+ large-image-source-ometiff>=1.27.5.dev67
92
+
93
+ [openjpeg]
94
+ large-image-source-openjpeg>=1.27.5.dev67
95
+
96
+ [openslide]
97
+ large-image-source-openslide>=1.27.5.dev67
98
+
99
+ [performance]
100
+ psutil>=4.2.0
101
+ simplejpeg
102
+
103
+ [pil]
104
+ large-image-source-pil>=1.27.5.dev67
105
+
106
+ [rasterio]
107
+ large-image-source-rasterio>=1.27.5.dev67
108
+
109
+ [sources]
110
+ large-image-source-vips>=1.27.5.dev67
111
+ large-image-source-zarr>=1.27.5.dev67
112
+ large-image-source-dicom>=1.27.5.dev67
113
+ large-image-source-multi>=1.27.5.dev67
114
+ large-image-source-pil>=1.27.5.dev67
115
+ large-image-source-test>=1.27.5.dev67
116
+ large-image-source-tifffile>=1.27.5.dev67
117
+ large-image-source-bioformats>=1.27.5.dev67
118
+ large-image-source-dummy>=1.27.5.dev67
119
+ large-image-source-mapnik>=1.27.5.dev67
120
+ large-image-source-openslide>=1.27.5.dev67
121
+ large-image-source-tiff>=1.27.5.dev67
122
+ large-image-source-gdal>=1.27.5.dev67
123
+ large-image-source-nd2>=1.27.5.dev67
124
+ large-image-source-openjpeg>=1.27.5.dev67
125
+ large-image-source-deepzoom>=1.27.5.dev67
126
+ large-image-source-rasterio>=1.27.5.dev67
127
+ large-image-source-ometiff>=1.27.5.dev67
128
+
129
+ [test]
130
+ large-image-source-test>=1.27.5.dev67
131
+
132
+ [tiff]
133
+ large-image-source-tiff>=1.27.5.dev67
134
+
135
+ [tifffile]
136
+ large-image-source-tifffile>=1.27.5.dev67
137
+
138
+ [tiledoutput]
139
+ pyvips
140
+
141
+ [vips]
142
+ large-image-source-vips>=1.27.5.dev67
143
+
144
+ [zarr]
145
+ large-image-source-zarr>=1.27.5.dev67
large-image-1.27.5.dev63/large_image.egg-info/requires.txt DELETED
@@ -1,145 +0,0 @@
1
- cachetools
2
- palettable
3
- Pillow
4
- numpy
5
- typing-extensions
6
-
7
- [all]
8
- large-image-source-dicom>=1.27.5.dev63
9
- large-image-source-rasterio>=1.27.5.dev63
10
- large-image-source-bioformats>=1.27.5.dev63
11
- psutil>=4.2.0
12
- large-image-source-pil[all]>=1.27.5.dev63
13
- large-image-source-deepzoom>=1.27.5.dev63
14
- large-image-source-mapnik>=1.27.5.dev63
15
- simplejpeg
16
- large-image-source-tiff>=1.27.5.dev63
17
- large-image-source-multi[all]>=1.27.5.dev63
18
- large-image-source-multi>=1.27.5.dev63
19
- large-image-source-zarr>=1.27.5.dev63
20
- large-image-source-dummy>=1.27.5.dev63
21
- large-image-source-gdal>=1.27.5.dev63
22
- large-image-source-test>=1.27.5.dev63
23
- large-image-source-pil>=1.27.5.dev63
24
- large-image-source-vips>=1.27.5.dev63
25
- matplotlib
26
- large-image-source-openjpeg>=1.27.5.dev63
27
- large-image-source-ometiff>=1.27.5.dev63
28
- large-image-source-openslide>=1.27.5.dev63
29
- pyvips
30
- large-image-source-nd2>=1.27.5.dev63
31
- large-image-source-rasterio[all]>=1.27.5.dev63
32
- large-image-source-tifffile>=1.27.5.dev63
33
- large-image-converter>=1.27.5.dev63
34
-
35
- [all:platform_system != "Windows"]
36
- pylibmc>=1.5.1
37
-
38
- [bioformats]
39
- large-image-source-bioformats>=1.27.5.dev63
40
-
41
- [colormaps]
42
- matplotlib
43
-
44
- [common]
45
- large-image-source-dicom>=1.27.5.dev63
46
- large-image-source-zarr>=1.27.5.dev63
47
- psutil>=4.2.0
48
- large-image-source-pil[all]>=1.27.5.dev63
49
- large-image-source-test>=1.27.5.dev63
50
- large-image-source-deepzoom>=1.27.5.dev63
51
- matplotlib
52
- simplejpeg
53
- large-image-source-nd2>=1.27.5.dev63
54
- large-image-source-tifffile>=1.27.5.dev63
55
- large-image-source-rasterio[all]>=1.27.5.dev63
56
- large-image-source-multi>=1.27.5.dev63
57
-
58
- [common:platform_system != "Windows"]
59
- pylibmc>=1.5.1
60
-
61
- [converter]
62
- large-image-converter>=1.27.5.dev63
63
-
64
- [deepzoom]
65
- large-image-source-deepzoom>=1.27.5.dev63
66
-
67
- [dicom]
68
- large-image-source-dicom>=1.27.5.dev63
69
-
70
- [dummy]
71
- large-image-source-dummy>=1.27.5.dev63
72
-
73
- [gdal]
74
- large-image-source-gdal>=1.27.5.dev63
75
-
76
- [mapnik]
77
- large-image-source-mapnik>=1.27.5.dev63
78
-
79
- [memcached]
80
-
81
- [memcached:platform_system != "Windows"]
82
- pylibmc>=1.5.1
83
-
84
- [multi]
85
- large-image-source-multi>=1.27.5.dev63
86
-
87
- [nd2]
88
- large-image-source-nd2>=1.27.5.dev63
89
-
90
- [ometiff]
91
- large-image-source-ometiff>=1.27.5.dev63
92
-
93
- [openjpeg]
94
- large-image-source-openjpeg>=1.27.5.dev63
95
-
96
- [openslide]
97
- large-image-source-openslide>=1.27.5.dev63
98
-
99
- [performance]
100
- psutil>=4.2.0
101
- simplejpeg
102
-
103
- [pil]
104
- large-image-source-pil>=1.27.5.dev63
105
-
106
- [rasterio]
107
- large-image-source-rasterio>=1.27.5.dev63
108
-
109
- [sources]
110
- large-image-source-dicom>=1.27.5.dev63
111
- large-image-source-rasterio>=1.27.5.dev63
112
- large-image-source-bioformats>=1.27.5.dev63
113
- large-image-source-zarr>=1.27.5.dev63
114
- large-image-source-dummy>=1.27.5.dev63
115
- large-image-source-gdal>=1.27.5.dev63
116
- large-image-source-deepzoom>=1.27.5.dev63
117
- large-image-source-mapnik>=1.27.5.dev63
118
- large-image-source-pil>=1.27.5.dev63
119
- large-image-source-test>=1.27.5.dev63
120
- large-image-source-vips>=1.27.5.dev63
121
- large-image-source-openjpeg>=1.27.5.dev63
122
- large-image-source-ometiff>=1.27.5.dev63
123
- large-image-source-openslide>=1.27.5.dev63
124
- large-image-source-tiff>=1.27.5.dev63
125
- large-image-source-nd2>=1.27.5.dev63
126
- large-image-source-tifffile>=1.27.5.dev63
127
- large-image-source-multi>=1.27.5.dev63
128
-
129
- [test]
130
- large-image-source-test>=1.27.5.dev63
131
-
132
- [tiff]
133
- large-image-source-tiff>=1.27.5.dev63
134
-
135
- [tifffile]
136
- large-image-source-tifffile>=1.27.5.dev63
137
-
138
- [tiledoutput]
139
- pyvips
140
-
141
- [vips]
142
- large-image-source-vips>=1.27.5.dev63
143
-
144
- [zarr]
145
- large-image-source-zarr>=1.27.5.dev63