large-image-source-zarr 1.29.1.dev22__tar.gz → 1.29.1.dev29__tar.gz

{large-image-source-zarr-1.29.1.dev22 → large-image-source-zarr-1.29.1.dev29}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-zarr
-Version: 1.29.1.dev22
+Version: 1.29.1.dev29
 Summary: A OME Zarr tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -17,11 +17,11 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.6
 License-File: LICENSE
-Requires-Dist: large-image>=1.29.1.dev22
+Requires-Dist: large-image>=1.29.1.dev29
 Requires-Dist: zarr
 Requires-Dist: imagecodecs-numcodecs
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.29.1.dev22; extra == "girder"
+Requires-Dist: girder-large-image>=1.29.1.dev29; extra == "girder"
 Provides-Extra: all
 Requires-Dist: large-image-converter; extra == "all"
 

{large-image-source-zarr-1.29.1.dev22 → large-image-source-zarr-1.29.1.dev29}/large_image_source_zarr/__init__.py

@@ -674,7 +674,7 @@ class ZarrFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         with self._addLock:
             name = str(self._tempdir.name).split('/')[-1]
             arrays = dict(self._zarr.arrays())
-            channel_axis = self._axes.get('s') or self._axes.get('c')
+            channel_axis = self._axes.get('c', self._axes.get('s'))
             datasets = []
             axes = []
             channels = []
@@ -705,7 +705,7 @@ class ZarrFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 elif a == 'z':
                     rdefs['defaultZ'] = 0
                 axes.append(axis_metadata)
-            if channel_axis and len(arrays) > 0:
+            if channel_axis is not None and len(arrays) > 0:
                 base_array = list(arrays.values())[0]
                 base_shape = base_array.shape
                 for c in range(base_shape[channel_axis]):
@@ -717,7 +717,13 @@ class ZarrFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                         'inverted': False,
                         'label': f'Band {c + 1}',
                     }
-                    channel_data = base_array[..., c]
+                    slicing = tuple(
+                        slice(None)
+                        if k != ('c' if 'c' in self._axes else 's')
+                        else c
+                        for k, v in self._axes.items()
+                    )
+                    channel_data = base_array[slicing]
                     channel_min = np.min(channel_data)
                     channel_max = np.max(channel_data)
                     channel_metadata['window'] = {

{large-image-source-zarr-1.29.1.dev22 → large-image-source-zarr-1.29.1.dev29}/large_image_source_zarr.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-zarr
-Version: 1.29.1.dev22
+Version: 1.29.1.dev29
 Summary: A OME Zarr tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -17,11 +17,11 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.6
 License-File: LICENSE
-Requires-Dist: large-image>=1.29.1.dev22
+Requires-Dist: large-image>=1.29.1.dev29
 Requires-Dist: zarr
 Requires-Dist: imagecodecs-numcodecs
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.29.1.dev22; extra == "girder"
+Requires-Dist: girder-large-image>=1.29.1.dev29; extra == "girder"
 Provides-Extra: all
 Requires-Dist: large-image-converter; extra == "all"
 

{large-image-source-zarr-1.29.1.dev22 → large-image-source-zarr-1.29.1.dev29}/large_image_source_zarr.egg-info/requires.txt

@@ -1,4 +1,4 @@
-large-image>=1.29.1.dev22
+large-image>=1.29.1.dev29
 zarr
 imagecodecs-numcodecs
 
@@ -6,4 +6,4 @@ imagecodecs-numcodecs
 large-image-converter
 
 [girder]
-girder-large-image>=1.29.1.dev22
+girder-large-image>=1.29.1.dev29