large-image-source-tifffile 1.26.4.dev8__tar.gz → 1.27.1.dev38__tar.gz

{large-image-source-tifffile-1.26.4.dev8 → large-image-source-tifffile-1.27.1.dev38}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-tifffile
-Version: 1.26.4.dev8
+Version: 1.27.1.dev38
 Summary: A tifffile tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

{large-image-source-tifffile-1.26.4.dev8 → large-image-source-tifffile-1.27.1.dev38}/large_image_source_tifffile/__init__.py

@@ -24,6 +24,13 @@ except PackageNotFoundError:
     pass
 
 
+class checkForMissingDataHandler(logging.Handler):
+    def emit(self, record):
+        msg = record.getMessage()
+        if 'Missing data are zeroed' in msg or 'OME series expected ' in msg:
+            raise TileSourceError(record.getMessage())
+
+
 def _lazyImport():
     """
     Import the tifffile module.  This is done when needed rather than in the
@@ -41,8 +48,13 @@ def _lazyImport():
             tifffile = None
             msg = 'tifffile module is too old.'
             raise TileSourceError(msg)
-        logging.getLogger('tifffile.tifffile').setLevel(logging.ERROR)
-        logging.getLogger('tifffile').setLevel(logging.ERROR)
+        # The missing data handler consumes most warnings, but throws if a
+        # warning about missing data occurs
+        # The tifffile.tifffile logger is in older versions of tifffile
+        logging.getLogger('tifffile.tifffile').setLevel(logging.WARNING)
+        logging.getLogger('tifffile.tifffile').addHandler(checkForMissingDataHandler())
+        logging.getLogger('tifffile').setLevel(logging.WARNING)
+        logging.getLogger('tifffile').addHandler(checkForMissingDataHandler())
 
 
 def et_findall(tag, text):
@@ -498,8 +510,6 @@ class TifffileFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
             if sidx not in self._zarrcache:
                 if len(self._zarrcache) > 10:
                     self._zarrcache = {}
-                if self.frames > 1:
-                    series.keyframe.nodata = None
                 za = zarr.open(series.aszarr(), mode='r')
                 hasgbs = hasattr(za[0], 'get_basic_selection')
                 self._zarrcache[sidx] = (za, hasgbs)

{large-image-source-tifffile-1.26.4.dev8 → large-image-source-tifffile-1.27.1.dev38}/large_image_source_tifffile.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-tifffile
-Version: 1.26.4.dev8
+Version: 1.27.1.dev38
 Summary: A tifffile tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

large-image-source-tifffile-1.27.1.dev38/large_image_source_tifffile.egg-info/requires.txt

@@ -0,0 +1,7 @@
+large-image>=1.27.1.dev38
+dask[array]
+tifffile[all]
+zarr
+
+[girder]
+girder-large-image>=1.27.1.dev38

large-image-source-tifffile-1.26.4.dev8/large_image_source_tifffile.egg-info/requires.txt

@@ -1,7 +0,0 @@
-large-image>=1.26.4.dev8
-dask[array]
-tifffile[all]
-zarr
-
-[girder]
-girder-large-image>=1.26.4.dev8