large-image-source-openslide 1.25.1.dev84__tar.gz → 1.26.1__tar.gz

{large-image-source-openslide-1.25.1.dev84 → large-image-source-openslide-1.26.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-openslide
-Version: 1.25.1.dev84
+Version: 1.26.1
 Summary: An Openslide tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

{large-image-source-openslide-1.25.1.dev84 → large-image-source-openslide-1.26.1}/large_image_source_openslide/__init__.py

@@ -225,6 +225,16 @@ class OpenslideFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                   nearPowerOfTwo(levels[0]['height'], entry['height'])]
         return levels
 
+    def _nonemptyLevelsList(self, frame=0):
+        """
+        Return a list of one value per level where the value is None if the
+        level does not exist in the file and any other value if it does.
+
+        :param frame: the frame number.
+        :returns: a list of levels length.
+        """
+        return [True if l['scale'] == 1 else None for l in self._svslevels]
+
     def getNativeMagnification(self):
         """
         Get the magnification at a particular level.
@@ -284,18 +294,21 @@ class OpenslideFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         # We ask to read an area that will cover the tile at the z level.  The
         # scale we computed in the __init__ process for this svs level tells
         # how much larger a region we need to read.
-        try:
-            tile = self._openslide.read_region(
-                (offsetx, offsety), svslevel['svslevel'],
-                (self.tileWidth * svslevel['scale'],
-                 self.tileHeight * svslevel['scale']))
-        except openslide.lowlevel.OpenSlideError as exc:
-            raise TileSourceError(
-                'Failed to get OpenSlide region (%r).' % exc)
-        # Always scale to the svs level 0 tile size.
-        if svslevel['scale'] != 1:
-            tile = tile.resize((self.tileWidth, self.tileHeight),
-                               getattr(PIL.Image, 'Resampling', PIL.Image).LANCZOS)
+        if svslevel['scale'] > 2 ** self._maxSkippedLevels:
+            tile = self._getTileFromEmptyLevel(x, y, z, **kwargs)
+        else:
+            try:
+                tile = self._openslide.read_region(
+                    (offsetx, offsety), svslevel['svslevel'],
+                    (self.tileWidth * svslevel['scale'],
+                     self.tileHeight * svslevel['scale']))
+            except openslide.lowlevel.OpenSlideError as exc:
+                raise TileSourceError(
+                    'Failed to get OpenSlide region (%r).' % exc)
+            # Always scale to the svs level 0 tile size.
+            if svslevel['scale'] != 1:
+                tile = tile.resize((self.tileWidth, self.tileHeight),
+                                   getattr(PIL.Image, 'Resampling', PIL.Image).LANCZOS)
         return self._outputTile(tile, TILE_FORMAT_PIL, x, y, z, pilImageAllowed,
                                 numpyAllowed, **kwargs)
 

{large-image-source-openslide-1.25.1.dev84 → large-image-source-openslide-1.26.1}/large_image_source_openslide.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-openslide
-Version: 1.25.1.dev84
+Version: 1.26.1
 Summary: An Openslide tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

large-image-source-openslide-1.26.1/large_image_source_openslide.egg-info/requires.txt

@@ -0,0 +1,6 @@
+large-image>=1.26.1
+openslide-python>=1.1.0
+tifftools>=1.2.0
+
+[girder]
+girder-large-image>=1.26.1

{large-image-source-openslide-1.25.1.dev84 → large-image-source-openslide-1.26.1}/setup.py

@@ -27,7 +27,7 @@ try:
     from setuptools_scm import get_version
 
     version = get_version(root='../..', local_scheme=prerelease_local_scheme)
-    limit_version = f'>={version}' if '+' not in version else ''
+    limit_version = f'>={version}' if '+' not in version and not os.getenv('TOX_ENV_NAME') else ''
 except (ImportError, LookupError):
     limit_version = ''
 

large-image-source-openslide-1.25.1.dev84/large_image_source_openslide.egg-info/requires.txt

@@ -1,6 +0,0 @@
-large-image>=1.25.1.dev84
-openslide-python>=1.1.0
-tifftools>=1.2.0
-
-[girder]
-girder-large-image>=1.25.1.dev84