large-image-source-ometiff 1.32.2.dev6__tar.gz → 1.32.3.dev1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (15) hide show
  1. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/PKG-INFO +4 -4
  2. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff/__init__.py +19 -8
  3. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff.egg-info/PKG-INFO +4 -4
  4. large_image_source_ometiff-1.32.3.dev1/large_image_source_ometiff.egg-info/requires.txt +5 -0
  5. large_image_source_ometiff-1.32.2.dev6/large_image_source_ometiff.egg-info/requires.txt +0 -5
  6. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/LICENSE +0 -0
  7. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/README.rst +0 -0
  8. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff/girder_source.py +0 -0
  9. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff.egg-info/SOURCES.txt +0 -0
  10. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff.egg-info/dependency_links.txt +0 -0
  11. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff.egg-info/entry_points.txt +0 -0
  12. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/large_image_source_ometiff.egg-info/top_level.txt +0 -0
  13. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/pyproject.toml +0 -0
  14. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/setup.cfg +0 -0
  15. {large_image_source_ometiff-1.32.2.dev6 → large_image_source_ometiff-1.32.3.dev1}/setup.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: large-image-source-ometiff
3
- Version: 1.32.2.dev6
3
+ Version: 1.32.3.dev1
4
4
  Summary: An OMETiff tilesource for large_image.
5
5
  Home-page: https://github.com/girder/large_image
6
6
  Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
19
19
  Requires-Python: >=3.8
20
20
  Description-Content-Type: text/x-rst
21
21
  License-File: LICENSE
22
- Requires-Dist: large-image>=1.32.2.dev6
23
- Requires-Dist: large-image-source-tiff>=1.32.2.dev6
22
+ Requires-Dist: large-image>=1.32.3.dev1
23
+ Requires-Dist: large-image-source-tiff>=1.32.3.dev1
24
24
  Provides-Extra: girder
25
- Requires-Dist: girder-large-image>=1.32.2.dev6; extra == "girder"
25
+ Requires-Dist: girder-large-image>=1.32.3.dev1; extra == "girder"
26
26
  Dynamic: author
27
27
  Dynamic: author-email
28
28
  Dynamic: classifier
@@ -361,7 +361,7 @@ class OMETiffFileTileSource(TiffFileTileSource, metaclass=LruCacheMetaclass):
361
361
  self._addMetadataFrameInformation(result, channels)
362
362
  return result
363
363
 
364
- def _reduceInternalMetadata(self, result, entry, prefix=''): # noqa
364
+ def _reduceInternalMetadata(self, result, entry, prefix='', refs=None): # noqa
365
365
  starts = ['StructuredAnnotations:OriginalMetadata:Series 0 ',
366
366
  'StructuredAnnotations:OriginalMetadata:']
367
367
  for start in starts:
@@ -374,27 +374,38 @@ class OMETiffFileTileSource(TiffFileTileSource, metaclass=LruCacheMetaclass):
374
374
  pkey = ''
375
375
  if isinstance(val, dict):
376
376
  if 'ID' in val and 'Value' in val:
377
- self._reduceInternalMetadata(result, val['Value'], prefix)
377
+ self._reduceInternalMetadata(result, val['Value'], prefix, refs)
378
378
  elif 'Key' in val and 'Value' in val:
379
- result[f'{pkey}:{val["Key"]}'.strip(':')] = val['Value']
379
+ rkey = f'{pkey}:{val["Key"]}'.strip(':')
380
+ result[rkey] = val['Value']
381
+ if refs:
382
+ refs[rkey] = (entry, key, None, 'Value')
380
383
  else:
381
- self._reduceInternalMetadata(result, val, pkey)
384
+ self._reduceInternalMetadata(result, val, pkey, refs)
382
385
  elif isinstance(val, list):
383
386
  for subidx, subval in enumerate(val):
384
387
  if isinstance(subval, dict):
385
388
  if 'ID' in subval and 'Value' in subval:
386
- self._reduceInternalMetadata(result, subval['Value'], prefix)
389
+ self._reduceInternalMetadata(result, subval['Value'], prefix, refs)
387
390
  elif 'Key' in subval and 'Value' in subval:
388
- result[f'{pkey}:{subval["Key"]}'] = subval['Value']
391
+ rkey = f'{pkey}:{subval["Key"]}'
392
+ result[rkey] = subval['Value']
393
+ if refs:
394
+ refs[rkey] = (entry, key, subidx, 'Value')
389
395
  else:
390
396
  self._reduceInternalMetadata(
391
- result, subval, f'{pkey}:{subidx}'.strip(':'))
397
+ result, subval, f'{pkey}:{subidx}'.strip(':'), refs)
392
398
  elif not isinstance(subval, list):
393
- result[f'{pkey}:{subidx}'.strip(':')] = subval
399
+ rkey = f'{pkey}:{subidx}'.strip(':')
400
+ result[rkey] = subval
401
+ if refs:
402
+ refs[rkey] = (entry, key, subidx, None)
394
403
  elif key == 'ID' and str(val).split(':')[0] in prefix:
395
404
  continue
396
405
  elif val != '' and pkey:
397
406
  result[pkey] = val
407
+ if refs:
408
+ refs[pkey] = (entry, key, None, None)
398
409
 
399
410
  def getInternalMetadata(self, **kwargs):
400
411
  """
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: large-image-source-ometiff
3
- Version: 1.32.2.dev6
3
+ Version: 1.32.3.dev1
4
4
  Summary: An OMETiff tilesource for large_image.
5
5
  Home-page: https://github.com/girder/large_image
6
6
  Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
19
19
  Requires-Python: >=3.8
20
20
  Description-Content-Type: text/x-rst
21
21
  License-File: LICENSE
22
- Requires-Dist: large-image>=1.32.2.dev6
23
- Requires-Dist: large-image-source-tiff>=1.32.2.dev6
22
+ Requires-Dist: large-image>=1.32.3.dev1
23
+ Requires-Dist: large-image-source-tiff>=1.32.3.dev1
24
24
  Provides-Extra: girder
25
- Requires-Dist: girder-large-image>=1.32.2.dev6; extra == "girder"
25
+ Requires-Dist: girder-large-image>=1.32.3.dev1; extra == "girder"
26
26
  Dynamic: author
27
27
  Dynamic: author-email
28
28
  Dynamic: classifier
@@ -0,0 +1,5 @@
1
+ large-image>=1.32.3.dev1
2
+ large-image-source-tiff>=1.32.3.dev1
3
+
4
+ [girder]
5
+ girder-large-image>=1.32.3.dev1
@@ -1,5 +0,0 @@
1
- large-image>=1.32.2.dev6
2
- large-image-source-tiff>=1.32.2.dev6
3
-
4
- [girder]
5
- girder-large-image>=1.32.2.dev6