large-image-source-ometiff 1.31.1.dev12__tar.gz → 1.31.1.dev14__tar.gz

{large_image_source_ometiff-1.31.1.dev12 → large_image_source_ometiff-1.31.1.dev14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-ometiff
-Version: 1.31.1.dev12
+Version: 1.31.1.dev14
 Summary: An OMETiff tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.31.1.dev12
-Requires-Dist: large-image-source-tiff>=1.31.1.dev12
+Requires-Dist: large-image>=1.31.1.dev14
+Requires-Dist: large-image-source-tiff>=1.31.1.dev14
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.31.1.dev12; extra == "girder"
+Requires-Dist: girder-large-image>=1.31.1.dev14; extra == "girder"
 
 An OMETiff tilesource for large_image.
 

{large_image_source_ometiff-1.31.1.dev12 → large_image_source_ometiff-1.31.1.dev14}/large_image_source_ometiff/__init__.py

@@ -360,6 +360,41 @@ class OMETiffFileTileSource(TiffFileTileSource, metaclass=LruCacheMetaclass):
         self._addMetadataFrameInformation(result, channels)
         return result
 
+    def _reduceInternalMetadata(self, result, entry, prefix=''):  # noqa
+        starts = ['StructuredAnnotations:OriginalMetadata:Series 0 ',
+                  'StructuredAnnotations:OriginalMetadata:']
+        for start in starts:
+            if prefix.startswith(start):
+                prefix = prefix[len(start):]
+        if isinstance(entry, dict):
+            for key, val in entry.items():
+                pkey = f'{prefix}:{key}'.strip(':')
+                if pkey in starts or (pkey + ':') in starts:
+                    pkey = ''
+                if isinstance(val, dict):
+                    if 'ID' in val and 'Value' in val:
+                        self._reduceInternalMetadata(result, val['Value'], prefix)
+                    elif 'Key' in val and 'Value' in val:
+                        result[f'{pkey}:{val["Key"]}'.strip(':')] = val['Value']
+                    else:
+                        self._reduceInternalMetadata(result, val, pkey)
+                elif isinstance(val, list):
+                    for subidx, subval in enumerate(val):
+                        if isinstance(subval, dict):
+                            if 'ID' in subval and 'Value' in subval:
+                                self._reduceInternalMetadata(result, subval['Value'], prefix)
+                            elif 'Key' in subval and 'Value' in subval:
+                                result[f'{pkey}:{subval["Key"]}'] = subval['Value']
+                            else:
+                                self._reduceInternalMetadata(
+                                    result, subval, f'{pkey}:{subidx}'.strip(':'))
+                        elif not isinstance(subval, list):
+                            result[f'{pkey}:{subidx}'.strip(':')] = subval
+                elif key == 'ID' and str(val).split(':')[0] in prefix:
+                    continue
+                elif val != '' and pkey:
+                    result[pkey] = val
+
     def getInternalMetadata(self, **kwargs):
         """
         Return additional known metadata about the tile source.  Data returned
@@ -368,7 +403,13 @@ class OMETiffFileTileSource(TiffFileTileSource, metaclass=LruCacheMetaclass):
 
         :returns: a dictionary of data or None.
         """
-        return {'omeinfo': self._omeinfo}
+        result = {'omeinfo': self._omeinfo}
+        try:
+            result['omereduced'] = {}
+            self._reduceInternalMetadata(result['omereduced'], self._omeinfo)
+        except Exception:
+            pass
+        return result
 
     def getNativeMagnification(self):
         """

{large_image_source_ometiff-1.31.1.dev12 → large_image_source_ometiff-1.31.1.dev14}/large_image_source_ometiff.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-ometiff
-Version: 1.31.1.dev12
+Version: 1.31.1.dev14
 Summary: An OMETiff tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.31.1.dev12
-Requires-Dist: large-image-source-tiff>=1.31.1.dev12
+Requires-Dist: large-image>=1.31.1.dev14
+Requires-Dist: large-image-source-tiff>=1.31.1.dev14
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.31.1.dev12; extra == "girder"
+Requires-Dist: girder-large-image>=1.31.1.dev14; extra == "girder"
 
 An OMETiff tilesource for large_image.
 

large_image_source_ometiff-1.31.1.dev14/large_image_source_ometiff.egg-info/requires.txt

@@ -0,0 +1,5 @@
+large-image>=1.31.1.dev14
+large-image-source-tiff>=1.31.1.dev14
+
+[girder]
+girder-large-image>=1.31.1.dev14

large_image_source_ometiff-1.31.1.dev12/large_image_source_ometiff.egg-info/requires.txt

@@ -1,5 +0,0 @@
-large-image>=1.31.1.dev12
-large-image-source-tiff>=1.31.1.dev12
-
-[girder]
-girder-large-image>=1.31.1.dev12