large-image-source-dicom 1.34.2.dev6__tar.gz → 1.34.2.dev8__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {large_image_source_dicom-1.34.2.dev6/large_image_source_dicom.egg-info → large_image_source_dicom-1.34.2.dev8}/PKG-INFO +3 -3
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/__init__.py +7 -2
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8/large_image_source_dicom.egg-info}/PKG-INFO +3 -3
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom.egg-info/requires.txt +2 -2
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/LICENSE +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/README.rst +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/docs/dicomweb_assetstore.rst +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/assetstore/__init__.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/assetstore/dicomweb_assetstore_adapter.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/assetstore/rest.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/dicom_metadata.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/dicom_tags.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/dicomweb_utils.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/girder_plugin.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/girder_source.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/constants.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/main.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/package.json +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/templates/assetstoreImport.pug +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreCreate.pug +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreEditFields.pug +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreImportButton.pug +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreMixins.pug +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/views/AssetstoresView.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/views/AuthOptions.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/views/DICOMwebImportView.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/views/EditAssetstoreWidget.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom/web_client/views/NewAssetstoreWidget.js +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom.egg-info/SOURCES.txt +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom.egg-info/dependency_links.txt +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom.egg-info/entry_points.txt +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/large_image_source_dicom.egg-info/top_level.txt +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/pyproject.toml +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/setup.cfg +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/setup.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/test_dicom/__init__.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/test_dicom/test_web_client.py +0 -0
- {large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/test_dicom/web_client_specs/dicomWebSpec.js +0 -0
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Metadata-Version: 2.4
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Name: large-image-source-dicom
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Version: 1.34.2.
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Version: 1.34.2.dev8
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Summary: A DICOM tilesource for large_image.
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Home-page: https://github.com/girder/large_image
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Author: Kitware, Inc.
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@@ -17,12 +17,12 @@ Classifier: Programming Language :: Python :: 3.14
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Requires-Python: >=3.10
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Description-Content-Type: text/x-rst
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License-File: LICENSE
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Requires-Dist: large-image>=1.34.2.
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Requires-Dist: large-image>=1.34.2.dev8
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Requires-Dist: wsidicom!=0.21.3,>=0.9.0
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Requires-Dist: pydicom<3; python_version < "3.10"
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Requires-Dist: pydicom; python_version >= "3.10"
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Provides-Extra: girder
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Requires-Dist: girder-large-image>=1.34.2.
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Requires-Dist: girder-large-image>=1.34.2.dev8; extra == "girder"
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Requires-Dist: girder<5,>=3.2.3; extra == "girder"
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Dynamic: author
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Dynamic: author-email
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@@ -4,12 +4,14 @@ import importlib.metadata
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import math
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import os
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import re
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import threading
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import warnings
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import numpy as np
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from large_image_source_dicom.dicom_metadata import extract_dicom_metadata
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from large_image_source_dicom.dicomweb_utils import get_dicomweb_metadata
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import large_image
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from large_image.cache_util import LruCacheMetaclass, methodcache
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from large_image.constants import TILE_FORMAT_PIL, SourcePriority
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from large_image.exceptions import TileSourceError, TileSourceFileNotFoundError
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@@ -187,6 +189,7 @@ class DICOMFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
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self.levels = int(max(1, math.ceil(math.log(
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max(self.sizeX / self.tileWidth, self.sizeY / self.tileHeight)) / math.log(2)) + 1))
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self._populatedLevels = len(self._dicom.pyramids[0])
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self._tileLock = threading.RLock()
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# We need to detect which levels are functionally present if we want to
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# return a sensible _nonemptyLevelsList
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@@ -370,8 +373,10 @@ class DICOMFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
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y1f = min(int(math.ceil(y1 / levelfactor)), self._dicom.pyramids[0][level].size.height)
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bw = int(bw // levelfactor)
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bh = int(bh // levelfactor)
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with self._tileLock:
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tile = self._dicom.read_region(
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(x0f, y0f), self._dicom.pyramids[0][level].level, (x1f - x0f, y1f - y0f),
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threads=large_image.config.cpu_count())
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format = TILE_FORMAT_PIL
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if tile.width < bw or tile.height < bh:
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tile = _imageToNumpy(tile)[0]
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Name: large-image-source-dicom
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Version: 1.34.2.dev8
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Summary: A DICOM tilesource for large_image.
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Home-page: https://github.com/girder/large_image
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Author: Kitware, Inc.
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Description-Content-Type: text/x-rst
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License-File: LICENSE
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Requires-Dist: large-image>=1.34.2.
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Requires-Dist: wsidicom!=0.21.3,>=0.9.0
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Requires-Dist: pydicom<3; python_version < "3.10"
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Requires-Dist: girder-large-image>=1.34.2.dev8; extra == "girder"
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{large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/pyproject.toml
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{large_image_source_dicom-1.34.2.dev6 → large_image_source_dicom-1.34.2.dev8}/test_dicom/__init__.py
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