large-image-source-dicom 1.27.1.dev57__tar.gz → 1.27.1.dev61__tar.gz

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Files changed (40) hide show
  1. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/PKG-INFO +1 -1
  2. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/__init__.py +7 -0
  3. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/girder_source.py +8 -2
  4. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom.egg-info/PKG-INFO +1 -1
  5. large-image-source-dicom-1.27.1.dev61/large_image_source_dicom.egg-info/requires.txt +5 -0
  6. large-image-source-dicom-1.27.1.dev57/large_image_source_dicom.egg-info/requires.txt +0 -5
  7. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/LICENSE +0 -0
  8. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/README.rst +0 -0
  9. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/assetstore/__init__.py +0 -0
  10. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/assetstore/dicomweb_assetstore_adapter.py +0 -0
  11. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/assetstore/rest.py +0 -0
  12. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/dicom_metadata.py +0 -0
  13. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/dicom_tags.py +0 -0
  14. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/dicomweb_utils.py +0 -0
  15. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/girder_plugin.py +0 -0
  16. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/constants.js +0 -0
  17. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/main.js +0 -0
  18. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/models/AssetstoreModel.js +0 -0
  19. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/package.json +0 -0
  20. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/routes.js +0 -0
  21. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/templates/assetstoreImport.pug +0 -0
  22. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreCreate.pug +0 -0
  23. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreEditFields.pug +0 -0
  24. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreImportButton.pug +0 -0
  25. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/templates/dicomwebAssetstoreMixins.pug +0 -0
  26. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/views/AssetstoresView.js +0 -0
  27. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/views/AuthOptions.js +0 -0
  28. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/views/DICOMwebImportView.js +0 -0
  29. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/views/EditAssetstoreWidget.js +0 -0
  30. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom/web_client/views/NewAssetstoreWidget.js +0 -0
  31. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom.egg-info/SOURCES.txt +0 -0
  32. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom.egg-info/dependency_links.txt +0 -0
  33. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom.egg-info/entry_points.txt +0 -0
  34. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/large_image_source_dicom.egg-info/top_level.txt +0 -0
  35. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/pyproject.toml +0 -0
  36. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/setup.cfg +0 -0
  37. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/setup.py +0 -0
  38. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/test_dicom/__init__.py +0 -0
  39. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/test_dicom/test_web_client.py +0 -0
  40. {large-image-source-dicom-1.27.1.dev57 → large-image-source-dicom-1.27.1.dev61}/test_dicom/web_client_specs/dicomWebSpec.js +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
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  Name: large-image-source-dicom
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- Version: 1.27.1.dev57
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+ Version: 1.27.1.dev61
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  Summary: A DICOM tilesource for large_image.
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  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
@@ -53,6 +53,7 @@ def _lazyImportPydicom():
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  if pydicom is None:
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  import pydicom
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+ return pydicom
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  def dicom_to_dict(ds, base=None):
@@ -138,6 +139,12 @@ class DICOMFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
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  if not os.path.isfile(path):
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  raise TileSourceFileNotFoundError(path) from None
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  root = os.path.dirname(path) or '.'
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+ try:
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+ _lazyImportPydicom()
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+ pydicom.filereader.dcmread(path, stop_before_pixels=True)
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+ except Exception as exc:
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+ msg = f'File cannot be opened via dicom tile source ({exc}).'
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+ raise TileSourceError(msg)
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  self._largeImagePath = [
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  os.path.join(root, entry) for entry in os.listdir(root)
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  if os.path.isfile(os.path.join(root, entry)) and
@@ -5,8 +5,9 @@ from girder.models.file import File
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  from girder.models.folder import Folder
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  from girder.models.item import Item
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  from girder.utility import assetstore_utilities
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+ from large_image.exceptions import TileSourceError
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- from . import DICOMFileTileSource
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+ from . import DICOMFileTileSource, _lazyImportPydicom
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  from .assetstore import DICOMWEB_META_KEY
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@@ -46,8 +47,13 @@ class DICOMGirderTileSource(DICOMFileTileSource, GirderTileSource):
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  filelist = [
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  File().getLocalFilePath(file) for file in Item().childFiles(self.item)
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  if self._pathMightBeDicom(file['name'])]
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- if len(filelist) > 1:
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+ if len(filelist) != 1:
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  return filelist
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+ try:
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+ _lazyImportPydicom().filereader.dcmread(filelist[0], stop_before_pixels=True)
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+ except Exception as exc:
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+ msg = f'File cannot be opened via dicom tile source ({exc}).'
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+ raise TileSourceError(msg)
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  filelist = []
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  folder = Folder().load(self.item['folderId'], force=True)
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  for item in Folder().childItems(folder):
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: large-image-source-dicom
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- Version: 1.27.1.dev57
3
+ Version: 1.27.1.dev61
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  Summary: A DICOM tilesource for large_image.
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  Home-page: https://github.com/girder/large_image
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  Author: Kitware, Inc.
@@ -0,0 +1,5 @@
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+ large-image>=1.27.1.dev61
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+ wsidicom>=0.9.0
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+
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+ [girder]
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+ girder-large-image>=1.27.1.dev61
@@ -1,5 +0,0 @@
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- large-image>=1.27.1.dev57
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- wsidicom>=0.9.0
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-
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- [girder]
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- girder-large-image>=1.27.1.dev57