large-image-source-bioformats 1.32.4.dev8__tar.gz → 1.32.4.dev10__tar.gz

{large_image_source_bioformats-1.32.4.dev8 → large_image_source_bioformats-1.32.4.dev10}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: large-image-source-bioformats
-Version: 1.32.4.dev8
+Version: 1.32.4.dev10
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -18,10 +18,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.32.4.dev8
+Requires-Dist: large-image>=1.32.4.dev10
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.32.4.dev8; extra == "girder"
+Requires-Dist: girder-large-image>=1.32.4.dev10; extra == "girder"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

{large_image_source_bioformats-1.32.4.dev8 → large_image_source_bioformats-1.32.4.dev10}/large_image_source_bioformats/__init__.py

@@ -234,6 +234,8 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
             raise TileSourceError(msg)
         self.addKnownExtensions()
 
+        self._tileLock = threading.RLock()
+
         try:
             with _javabridgeAttachLock:
                 javabridge.attach()
@@ -673,16 +675,19 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 javabridge.attach()
             try:
                 if width > 0 and height > 0:
-                    tile = self._bioimage.read(
-                        c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
-                        rescale=False,  # return internal data types
-                        XYWH=(offsetx, offsety, width, height))
+                    with self._tileLock:
+                        tile = self._bioimage.read(
+                            c=fc, z=fz, t=ft,
+                            series=fseries['series'][seriesLevel],
+                            rescale=False,  # return internal data types
+                            XYWH=(offsetx, offsety, width, height))
                 else:
                     # We need the same dtype, so read 1x1 at 0x0
-                    tile = self._bioimage.read(
-                        c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
-                        rescale=False,  # return internal data types
-                        XYWH=(0, 0, 1, 1))
+                    with self._tileLock:
+                        tile = self._bioimage.read(
+                            c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
+                            rescale=False,  # return internal data types
+                            XYWH=(0, 0, 1, 1))
                     tile = np.zeros(tuple([0, 0] + list(tile.shape[2:])), dtype=tile.dtype)
                 format = TILE_FORMAT_NUMPY
             except javabridge.JavaException as exc:
@@ -742,10 +747,11 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         with _javabridgeAttachLock:
             javabridge.attach()
         try:
-            image = self._bioimage.read(
-                series=series,
-                rescale=False,  # return internal data types
-                XYWH=(0, 0, info['sizeX'], info['sizeY']))
+            with self._tileLock:
+                image = self._bioimage.read(
+                    series=series,
+                    rescale=False,  # return internal data types
+                    XYWH=(0, 0, info['sizeX'], info['sizeY']))
         except javabridge.JavaException as exc:
             es = javabridge.to_string(exc.throwable)
             raise TileSourceError('Failed to get Bioformat series (%s, %r).' % (es, (

{large_image_source_bioformats-1.32.4.dev8 → large_image_source_bioformats-1.32.4.dev10}/large_image_source_bioformats.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: large-image-source-bioformats
-Version: 1.32.4.dev8
+Version: 1.32.4.dev10
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -18,10 +18,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.32.4.dev8
+Requires-Dist: large-image>=1.32.4.dev10
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.32.4.dev8; extra == "girder"
+Requires-Dist: girder-large-image>=1.32.4.dev10; extra == "girder"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

large_image_source_bioformats-1.32.4.dev10/large_image_source_bioformats.egg-info/requires.txt

@@ -0,0 +1,5 @@
+large-image>=1.32.4.dev10
+python-bioformats>=1.5.2
+
+[girder]
+girder-large-image>=1.32.4.dev10

large_image_source_bioformats-1.32.4.dev8/large_image_source_bioformats.egg-info/requires.txt

@@ -1,5 +0,0 @@
-large-image>=1.32.4.dev8
-python-bioformats>=1.5.2
-
-[girder]
-girder-large-image>=1.32.4.dev8