large-image-source-bioformats 1.30.6.dev6__tar.gz → 1.30.6.dev12__tar.gz

{large_image_source_bioformats-1.30.6.dev6 → large_image_source_bioformats-1.30.6.dev12}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-bioformats
-Version: 1.30.6.dev6
+Version: 1.30.6.dev12
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.30.6.dev6
+Requires-Dist: large-image>=1.30.6.dev12
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.30.6.dev6; extra == "girder"
+Requires-Dist: girder-large-image>=1.30.6.dev12; extra == "girder"
 
 An bioformats tilesource for large_image.
 

{large_image_source_bioformats-1.30.6.dev6 → large_image_source_bioformats-1.30.6.dev12}/large_image_source_bioformats/__init__.py

@@ -741,6 +741,19 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 ext = dotext.strip('.')
                 if ext not in cls.extensions:
                     cls.extensions[ext] = SourcePriority.IMPLICIT
+            # The python modules doesn't list all the extensions that can be
+            # read, so supplement from the jar
+            readerlist = zipfile.ZipFile(
+                pathlib.Path(bioformats.__file__).parent /
+                'jars/bioformats_package.jar',
+            ).open('loci/formats/readers.txt').read(100000).decode().split('\n')
+            pattern = re.compile(r'^loci\.formats\.in\..* # (?:.*?\b(\w{2,})\b(?:,|\s|$))')
+            for line in readerlist:
+                for ext in set(pattern.findall(line)) - {
+                        'pattern', 'urlreader', 'screen', 'zip', 'zarr', 'db',
+                        'fake', 'no'}:
+                    if ext not in cls.extensions:
+                        cls.extensions[ext] = SourcePriority.IMPLICIT
 
 
 def open(*args, **kwargs):

{large_image_source_bioformats-1.30.6.dev6 → large_image_source_bioformats-1.30.6.dev12}/large_image_source_bioformats.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-bioformats
-Version: 1.30.6.dev6
+Version: 1.30.6.dev12
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.30.6.dev6
+Requires-Dist: large-image>=1.30.6.dev12
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.30.6.dev6; extra == "girder"
+Requires-Dist: girder-large-image>=1.30.6.dev12; extra == "girder"
 
 An bioformats tilesource for large_image.
 

large_image_source_bioformats-1.30.6.dev12/large_image_source_bioformats.egg-info/requires.txt

@@ -0,0 +1,5 @@
+large-image>=1.30.6.dev12
+python-bioformats>=1.5.2
+
+[girder]
+girder-large-image>=1.30.6.dev12

large_image_source_bioformats-1.30.6.dev6/large_image_source_bioformats.egg-info/requires.txt

@@ -1,5 +0,0 @@
-large-image>=1.30.6.dev6
-python-bioformats>=1.5.2
-
-[girder]
-girder-large-image>=1.30.6.dev6