large-image-source-bioformats 1.26.1.dev37__tar.gz → 1.26.1.dev41__tar.gz

{large-image-source-bioformats-1.26.1.dev37 → large-image-source-bioformats-1.26.1.dev41}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-bioformats
-Version: 1.26.1.dev37
+Version: 1.26.1.dev41
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

{large-image-source-bioformats-1.26.1.dev37 → large-image-source-bioformats-1.26.1.dev41}/large_image_source_bioformats/__init__.py

@@ -74,7 +74,10 @@ def _monitor_thread():
                     source._bioimage.close()
                 except Exception:
                     pass
-                source._bioimage = None
+                try:
+                    source._bioimage = None
+                except Exception:
+                    pass
         except AssertionError:
             pass
         finally:
@@ -128,8 +131,8 @@ def _startJavabridge(logger):
             atexit.register(_stopJavabridge)
             logger.info('Started JVM for Bioformats tile source.')
             _javabridgeStarted = True
-        except RuntimeError as exc:
-            logger.exception('Cannot start JVM for Bioformats tile source.', exc)
+        except RuntimeError:
+            logger.exception('Cannot start JVM for Bioformats tile source.')
             _javabridgeStarted = False
     return _javabridgeStarted
 
@@ -178,7 +181,7 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         super().__init__(path, **kwargs)
 
         largeImagePath = str(self._getLargeImagePath())
-        self._ignoreSourceNames('bioformats', largeImagePath, r'\.png$')
+        self._ignoreSourceNames('bioformats', largeImagePath, r'(^[^.]*|\.(png|zarr(\.db|\.zip)))$')
 
         if not _startJavabridge(self.logger):
             msg = 'File cannot be opened by bioformats reader because javabridge failed to start'
@@ -276,6 +279,8 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 self._bioimage.close()
                 del self._bioimage
                 _openImages.remove(weakref.ref(self))
+            except Exception:
+                pass
             finally:
                 if javabridge.get_env():
                     javabridge.detach()

{large-image-source-bioformats-1.26.1.dev37 → large-image-source-bioformats-1.26.1.dev41}/large_image_source_bioformats.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-bioformats
-Version: 1.26.1.dev37
+Version: 1.26.1.dev41
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.

large-image-source-bioformats-1.26.1.dev41/large_image_source_bioformats.egg-info/requires.txt

@@ -0,0 +1,5 @@
+large-image>=1.26.1.dev41
+python-bioformats>=1.5.2
+
+[girder]
+girder-large-image>=1.26.1.dev41

large-image-source-bioformats-1.26.1.dev37/large_image_source_bioformats.egg-info/requires.txt

@@ -1,5 +0,0 @@
-large-image>=1.26.1.dev37
-python-bioformats>=1.5.2
-
-[girder]
-girder-large-image>=1.26.1.dev37