lare 0.1.0__tar.gz

lare-0.1.0/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# Testing & Linting
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+.hypothesis/
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+
+# Jupyter
+.ipynb_checkpoints
+
+# Environments
+.env
+.env.local
+.venv
+env/
+venv/
+ENV/
+
+# Node.js & Webapp
+node_modules/
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+pnpm-debug.log*
+.next/
+out/
+dist/
+.astro/
+static/
+
+# Astronomy & Data Files
+*.fits
+*.fits.gz
+*.fit
+*.h5
+*.hdf5
+*.log
+
+# OS & Editors
+.DS_Store
+.DS_Store?
+._*
+.Spotlight-V100
+.Trashes
+.idea/
+.vscode/
+*.swp
+*.swo

lare-0.1.0/LICENSE

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+MIT License
+
+Copyright (c) 2026 William Roque
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

lare-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: lare
+Version: 0.1.0
+Summary: Label And Review Engine — high-velocity image classification auditing
+License: MIT
+Requires-Python: >=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: click>=8.1
+Requires-Dist: polars>=1.0
+Requires-Dist: fastapi>=0.111
+Requires-Dist: uvicorn[standard]>=0.30
+Requires-Dist: pydantic>=2.0
+Requires-Dist: tomli>=2.0; python_version < "3.11"
+Requires-Dist: tomli-w>=1.0
+Requires-Dist: rich>=13.0
+Requires-Dist: questionary>=2.0
+Provides-Extra: fits
+Requires-Dist: astropy>=6.1.0; extra == "fits"
+Requires-Dist: numpy>=1.26; extra == "fits"
+Requires-Dist: matplotlib>=3.8; extra == "fits"
+Dynamic: license-file
+
+<h1 align="center">
+    <img src="https://raw.githubusercontent.com/williamroque/LARE/refs/heads/main/assets/wordmark.svg" width="500">
+</h1>
+
+A high-velocity, self-contained inference auditing and dataset labeling tool. LARE provides a highly optimized pipeline for reviewing and classifying multimodal data (e.g., FITS images and attention maps) using a structured, keyboard-driven web interface and a robust SQLite-backed queuing system.
+
+## Table of Contents
+- [Architecture & Lifecycle](#architecture--lifecycle)
+- [CLI Commands](#cli-commands)
+- [Configuration Model](#configuration-model)
+- [Database Schema](#database-schema)
+- [Web UI & Ergonomics](#web-ui--ergonomics)
+- [Installation](#installation)
+
+## Architecture & Lifecycle
+
+LARE operates on a reproducible, self-contained architecture. The entire workflow is governed by a declarative template configuration (`lare_config.toml`) which compiles source data into an immutable, frozen SQLite database state (`project.lare`).
+
+```mermaid
+flowchart TD
+    Config[lare_config.toml<br>Pure template / Project recipe]
+    CSV[Source CSV]
+    DB[(project.lare<br>Self-Contained DB)]
+    Run(lare run)
+    Export(lare export)
+
+    Config --> |lare create| DB
+    CSV --> |lare create| DB
+    DB --> |Reads Only| Run
+    DB --> |Reads Only| Export
+```
+
+## CLI Commands
+
+### `lare create`
+The initialization and pipeline seeding engine.
+
+- **Interactive Guide:** Walks users through creating a `lare_config.toml` if one is not provided.
+- **Template Fallback:** Prompts to use an existing `lare_config.toml` if found in the current directory.
+- **Safety Lock:** Prevents accidental overwriting of an existing `project.lare` database file.
+- `--config PATH`: Bypasses interactive prompts to use a specified external configuration file.
+- `--no-project`: Authors the configuration file interactively without compiling the data or creating the database.
+- **Collision Check Constraint:** Enforces namespace uniqueness when using the `stem` extraction method, raising a validation error on duplicate file names.
+- **Freezing State:** Serializes evaluated configuration parameters into `project_metadata.config_json` inside the database.
+
+### `lare run [PROJECT]`
+Starts the runtime engine using the `.lare` database file as the absolute source of truth.
+
+- **Isolation:** Ignores any local or external `.toml` files on disk, reading all shortcuts, paths, and rendering properties directly from the internal `config_json`.
+- **Execution:** Launches a local FastAPI server, mounts static image assets, serves the compiled React production client, and automatically opens the user's default web browser.
+
+### `lare export [PROJECT]`
+Extracts classifications based on internal schema instructions.
+
+- **Strategies:**
+  - `csv`: Dumps a flat table containing audited rows to a target path.
+  - `copy`: Aggregates the raw image files that received classifications and copies them to an organized target subdirectory pattern.
+- **Flags:** Requires `--strategy csv|copy` and `--output PATH`.
+- **Audit Metric Guard:** Validates the number of audited rows against the total queue and flashes a warning if the audit is incomplete.
+
+## Configuration Model
+
+Projects are defined via a declarative `lare_config.toml` recipe.
+
+```toml
+[paths]
+# The SQLite database containing labeling progress
+project = "project.lare"
+# When set, paths in the CSV are overridden to be image_directory + basename
+image_directory = "images/"
+
+[rules]
+# SQL expressions for use with Polars
+filter_method = "GREATEST(sim_class_0, sim_class_1, sim_class_2) > 0.1"
+ranking_score = "GREATEST(sim_class_0, sim_class_1, sim_class_2)"
+
+# Which column in the CSV to use as the entry ID
+id_column = "filepath"
+# Can also be "raw" or "basename"
+id_display_method = "stem"
+
+[[images]]
+column = "filepath"
+title = "Galaxy"
+format = "fits"
+stretching = "asinh"
+min_threshold = 0.5
+max_threshold = 99.5
+subdirectory = "galaxies"
+
+[[images]]
+column = "attention_png"
+title = "Attention map (CBAM)"
+format = "png"
+subdirectory = "attention_maps"
+
+[[labels]]
+label = "sim_class_0"
+title = "PSG"
+shortcut = "s"
+
+[[labels]]
+label = "sim_class_1"
+title = "PTS"
+shortcut = "t"
+```
+
+## Database Schema
+
+Table structures are built dynamically at runtime by cross-referencing Polars DataFrame schemas with target SQLite columns. 
+
+```sql
+-- Table 1: Complete project footprint and frozen configurations
+CREATE TABLE project_metadata (
+    project_id TEXT PRIMARY KEY,       -- Random UUIDv4 generated during `lare create`
+    created_at TEXT DEFAULT CURRENT_TIMESTAMP,
+    config_json TEXT NOT NULL          -- Entire evaluated TOML structure frozen as JSON
+);
+
+-- Table 2: High-throughput labeling queue
+CREATE TABLE labeling_queue (
+    queue_order INTEGER PRIMARY KEY,  -- Strictly enforces the frozen Polars ranking
+    entry_id TEXT UNIQUE NOT NULL,    -- Absolute identifier (e.g. true raw csv filepath/hash)
+    display_id TEXT NOT NULL,         -- Extracted target identifier mapped to config rules
+    final_label TEXT DEFAULT NULL,    -- The ONLY mutable state column in the app
+    
+    -- Real columns dynamically injected from the CSV fields at creation
+    filepath TEXT,
+    attention_png TEXT,
+    sim_class_0 REAL,
+    sim_class_1 REAL,
+    sim_class_2 REAL
+);
+
+-- Optimization Performance Indexes
+CREATE INDEX idx_display_id ON labeling_queue(display_id);
+CREATE INDEX idx_final_label ON labeling_queue(final_label);
+```
+
+## Web UI & Ergonomics
+
+The user interface balances structural minimization with optimal keyboard tracking for high-velocity inference auditing.
+
+### Left Panel: Universal Aspect-Ratio Grid
+- Renders assets side-by-side using a clean CSS grid wrapper.
+- Enforces standard row heights matching the viewport while allowing flexible widths to preserve physical aspect ratios across multimodal formats (e.g., wide FITS plots next to square attention maps).
+
+### Right Panel: Information & Controls Hub
+- **Title Anchor:** Displays the current entry's clean `display_id`.
+- **Inference Action Targets:** Block buttons mapped to explicit classification shortcuts (e.g., `PSG (s)`). Displays structural supporting labels indicating prediction weight (`SCORE: {score}`).
+- **Mutations & Queue Advancement:** Clicking an action target or invoking a shortcut writes the choice to `final_label` in SQLite, appends the ID to a session stack, and immediately transitions the view state to the next row where `final_label IS NULL`.
+
+### Navigation Safety Features
+- **Active Field Input Trap:** Bypasses single-letter global shortcuts when `document.activeElement` matches a text input (e.g., the "Jump To" field) to avoid accidental triggers.
+- **"Previous Entry" Stack:** Allows users to step backward, overwriting previously registered tags or fixing rapid misclicks cleanly.
+- **"Jump To" Processing Logic:** Resolves queries against indexed database fields. On namespace collisions, a structured conflict layout provides a clean micro-dropdown to select the desired target.
+
+### Image Serving Pipeline
+- **Decoupled Asset Threading:** The FastAPI backend manages standard static local asset streaming.
+- **Pre-rendering:** Avoids computing complex transformations (asinh arrays, thresholds) iteratively on-the-fly. The server pre-processes image arrays, dumping lightweight web-friendly representations into a hidden footprint directory, which is purged when LARE closes (capped at a 25-image lookahead).
+
+## Installation
+
+```bash
+pip install lare
+```

lare-0.1.0/README.md

@@ -0,0 +1,166 @@
+<h1 align="center">
+    <img src="https://raw.githubusercontent.com/williamroque/LARE/refs/heads/main/assets/wordmark.svg" width="500">
+</h1>
+
+A high-velocity, self-contained inference auditing and dataset labeling tool. LARE provides a highly optimized pipeline for reviewing and classifying multimodal data (e.g., FITS images and attention maps) using a structured, keyboard-driven web interface and a robust SQLite-backed queuing system.
+
+## Table of Contents
+- [Architecture & Lifecycle](#architecture--lifecycle)
+- [CLI Commands](#cli-commands)
+- [Configuration Model](#configuration-model)
+- [Database Schema](#database-schema)
+- [Web UI & Ergonomics](#web-ui--ergonomics)
+- [Installation](#installation)
+
+## Architecture & Lifecycle
+
+LARE operates on a reproducible, self-contained architecture. The entire workflow is governed by a declarative template configuration (`lare_config.toml`) which compiles source data into an immutable, frozen SQLite database state (`project.lare`).
+
+```mermaid
+flowchart TD
+    Config[lare_config.toml<br>Pure template / Project recipe]
+    CSV[Source CSV]
+    DB[(project.lare<br>Self-Contained DB)]
+    Run(lare run)
+    Export(lare export)
+
+    Config --> |lare create| DB
+    CSV --> |lare create| DB
+    DB --> |Reads Only| Run
+    DB --> |Reads Only| Export
+```
+
+## CLI Commands
+
+### `lare create`
+The initialization and pipeline seeding engine.
+
+- **Interactive Guide:** Walks users through creating a `lare_config.toml` if one is not provided.
+- **Template Fallback:** Prompts to use an existing `lare_config.toml` if found in the current directory.
+- **Safety Lock:** Prevents accidental overwriting of an existing `project.lare` database file.
+- `--config PATH`: Bypasses interactive prompts to use a specified external configuration file.
+- `--no-project`: Authors the configuration file interactively without compiling the data or creating the database.
+- **Collision Check Constraint:** Enforces namespace uniqueness when using the `stem` extraction method, raising a validation error on duplicate file names.
+- **Freezing State:** Serializes evaluated configuration parameters into `project_metadata.config_json` inside the database.
+
+### `lare run [PROJECT]`
+Starts the runtime engine using the `.lare` database file as the absolute source of truth.
+
+- **Isolation:** Ignores any local or external `.toml` files on disk, reading all shortcuts, paths, and rendering properties directly from the internal `config_json`.
+- **Execution:** Launches a local FastAPI server, mounts static image assets, serves the compiled React production client, and automatically opens the user's default web browser.
+
+### `lare export [PROJECT]`
+Extracts classifications based on internal schema instructions.
+
+- **Strategies:**
+  - `csv`: Dumps a flat table containing audited rows to a target path.
+  - `copy`: Aggregates the raw image files that received classifications and copies them to an organized target subdirectory pattern.
+- **Flags:** Requires `--strategy csv|copy` and `--output PATH`.
+- **Audit Metric Guard:** Validates the number of audited rows against the total queue and flashes a warning if the audit is incomplete.
+
+## Configuration Model
+
+Projects are defined via a declarative `lare_config.toml` recipe.
+
+```toml
+[paths]
+# The SQLite database containing labeling progress
+project = "project.lare"
+# When set, paths in the CSV are overridden to be image_directory + basename
+image_directory = "images/"
+
+[rules]
+# SQL expressions for use with Polars
+filter_method = "GREATEST(sim_class_0, sim_class_1, sim_class_2) > 0.1"
+ranking_score = "GREATEST(sim_class_0, sim_class_1, sim_class_2)"
+
+# Which column in the CSV to use as the entry ID
+id_column = "filepath"
+# Can also be "raw" or "basename"
+id_display_method = "stem"
+
+[[images]]
+column = "filepath"
+title = "Galaxy"
+format = "fits"
+stretching = "asinh"
+min_threshold = 0.5
+max_threshold = 99.5
+subdirectory = "galaxies"
+
+[[images]]
+column = "attention_png"
+title = "Attention map (CBAM)"
+format = "png"
+subdirectory = "attention_maps"
+
+[[labels]]
+label = "sim_class_0"
+title = "PSG"
+shortcut = "s"
+
+[[labels]]
+label = "sim_class_1"
+title = "PTS"
+shortcut = "t"
+```
+
+## Database Schema
+
+Table structures are built dynamically at runtime by cross-referencing Polars DataFrame schemas with target SQLite columns. 
+
+```sql
+-- Table 1: Complete project footprint and frozen configurations
+CREATE TABLE project_metadata (
+    project_id TEXT PRIMARY KEY,       -- Random UUIDv4 generated during `lare create`
+    created_at TEXT DEFAULT CURRENT_TIMESTAMP,
+    config_json TEXT NOT NULL          -- Entire evaluated TOML structure frozen as JSON
+);
+
+-- Table 2: High-throughput labeling queue
+CREATE TABLE labeling_queue (
+    queue_order INTEGER PRIMARY KEY,  -- Strictly enforces the frozen Polars ranking
+    entry_id TEXT UNIQUE NOT NULL,    -- Absolute identifier (e.g. true raw csv filepath/hash)
+    display_id TEXT NOT NULL,         -- Extracted target identifier mapped to config rules
+    final_label TEXT DEFAULT NULL,    -- The ONLY mutable state column in the app
+    
+    -- Real columns dynamically injected from the CSV fields at creation
+    filepath TEXT,
+    attention_png TEXT,
+    sim_class_0 REAL,
+    sim_class_1 REAL,
+    sim_class_2 REAL
+);
+
+-- Optimization Performance Indexes
+CREATE INDEX idx_display_id ON labeling_queue(display_id);
+CREATE INDEX idx_final_label ON labeling_queue(final_label);
+```
+
+## Web UI & Ergonomics
+
+The user interface balances structural minimization with optimal keyboard tracking for high-velocity inference auditing.
+
+### Left Panel: Universal Aspect-Ratio Grid
+- Renders assets side-by-side using a clean CSS grid wrapper.
+- Enforces standard row heights matching the viewport while allowing flexible widths to preserve physical aspect ratios across multimodal formats (e.g., wide FITS plots next to square attention maps).
+
+### Right Panel: Information & Controls Hub
+- **Title Anchor:** Displays the current entry's clean `display_id`.
+- **Inference Action Targets:** Block buttons mapped to explicit classification shortcuts (e.g., `PSG (s)`). Displays structural supporting labels indicating prediction weight (`SCORE: {score}`).
+- **Mutations & Queue Advancement:** Clicking an action target or invoking a shortcut writes the choice to `final_label` in SQLite, appends the ID to a session stack, and immediately transitions the view state to the next row where `final_label IS NULL`.
+
+### Navigation Safety Features
+- **Active Field Input Trap:** Bypasses single-letter global shortcuts when `document.activeElement` matches a text input (e.g., the "Jump To" field) to avoid accidental triggers.
+- **"Previous Entry" Stack:** Allows users to step backward, overwriting previously registered tags or fixing rapid misclicks cleanly.
+- **"Jump To" Processing Logic:** Resolves queries against indexed database fields. On namespace collisions, a structured conflict layout provides a clean micro-dropdown to select the desired target.
+
+### Image Serving Pipeline
+- **Decoupled Asset Threading:** The FastAPI backend manages standard static local asset streaming.
+- **Pre-rendering:** Avoids computing complex transformations (asinh arrays, thresholds) iteratively on-the-fly. The server pre-processes image arrays, dumping lightweight web-friendly representations into a hidden footprint directory, which is purged when LARE closes (capped at a 25-image lookahead).
+
+## Installation
+
+```bash
+pip install lare
+```

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