lamindb_setup 0.76.0__tar.gz → 0.76.2__tar.gz

{lamindb_setup-0.76.0 → lamindb_setup-0.76.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb_setup
-Version: 0.76.0
+Version: 0.76.2
 Summary: Setup & configure LaminDB.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Description-Content-Type: text/markdown

{lamindb_setup-0.76.0 → lamindb_setup-0.76.2}/lamindb_setup/__init__.py

@@ -34,7 +34,7 @@ Modules & settings:
 
 """
 
-__version__ = "0.76.0"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.76.2"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import sys
 from os import name as _os_name

{lamindb_setup-0.76.0 → lamindb_setup-0.76.2}/lamindb_setup/_schema_metadata.py

@@ -22,6 +22,13 @@ from lamindb_setup import settings
 from lamindb_setup._init_instance import get_schema_module_name
 from lamindb_setup.core._hub_client import call_with_fallback_auth
 
+# surpress pydantic warning about `model_` namespace
+try:
+    BaseModel.model_config["protected_namespaces"] = ()
+except Exception:
+    pass
+
+
 if TYPE_CHECKING:
     from supabase import Client
 

{lamindb_setup-0.76.0 → lamindb_setup-0.76.2}/lamindb_setup/core/_setup_bionty_sources.py

@@ -79,9 +79,8 @@ def load_bionty_sources(isettings: InstanceSettings):
         for kwargs in active_records:
             for db_field, base_col in RENAME.items():
                 kwargs[base_col] = kwargs.pop(db_field)
-                # TODO: non-bionty schema?
-                if db_field == "entity":
-                    kwargs["entity"] = kwargs["entity"].split(".")[1]
+            # TODO: non-bionty schema?
+            kwargs["entity"] = kwargs["entity"].replace("bionty.", "")
         write_yaml(
             parse_currently_used_sources(active_records),
             bionty_base.settings.lamindb_sources,

{lamindb_setup-0.76.0 → lamindb_setup-0.76.2}/tests/hub-local/test_update_schema_in_hub.py

@@ -57,7 +57,7 @@ def test_update_schema_in_hub(setup_instance):
 
     assert schema["schema_json"]["core"]["artifact"]["fields"]["_accessor"] == {
         "type": "CharField",
-        "column_name": "accessor",
+        "column_name": "_accessor",
         "through": None,
         "field_name": "_accessor",
         "model_name": "artifact",
@@ -123,38 +123,38 @@ def test_update_schema_in_hub(setup_instance):
         "related_schema_name": "core",
     }
 
-    assert schema["schema_json"]["core"]["transform"]["fields"]["parents"] == {
+    assert schema["schema_json"]["core"]["transform"]["fields"]["predecessors"] == {
         "type": "ManyToManyField",
         "column_name": None,
         "through": {
             "left_key": "from_transform_id",
             "right_key": "to_transform_id",
-            "link_table_name": "lnschema_core_transform_parents",
+            "link_table_name": "lnschema_core_transform_predecessors",
         },
-        "field_name": "parents",
+        "field_name": "predecessors",
         "model_name": "transform",
         "schema_name": "core",
         "is_link_table": False,
         "relation_type": "many-to-many",
-        "related_field_name": "children",
+        "related_field_name": "successors",
         "related_model_name": "transform",
         "related_schema_name": "core",
     }
 
-    assert schema["schema_json"]["core"]["transform"]["fields"]["children"] == {
+    assert schema["schema_json"]["core"]["transform"]["fields"]["successors"] == {
         "type": "ManyToManyField",
         "column_name": None,
         "through": {
             "left_key": "to_transform_id",
             "right_key": "from_transform_id",
-            "link_table_name": "lnschema_core_transform_parents",
+            "link_table_name": "lnschema_core_transform_predecessors",
         },
-        "field_name": "children",
+        "field_name": "successors",
         "model_name": "transform",
         "schema_name": "core",
         "is_link_table": False,
         "relation_type": "many-to-many",
-        "related_field_name": "parents",
+        "related_field_name": "predecessors",
         "related_model_name": "transform",
         "related_schema_name": "core",
     }