lamindb 1.7a1__tar.gz → 1.7.1__tar.gz

{lamindb-1.7a1 → lamindb-1.7.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.7a1
+Version: 1.7.1
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -10,8 +10,8 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: lamin_utils==0.15.0
-Requires-Dist: lamin_cli==1.5.1
-Requires-Dist: lamindb_setup[aws]==1.7.0
+Requires-Dist: lamin_cli==1.5.4
+Requires-Dist: lamindb_setup[aws]==1.7.3
 Requires-Dist: pyyaml
 Requires-Dist: pyarrow
 Requires-Dist: pandera>=0.24.0

{lamindb-1.7a1 → lamindb-1.7.1}/lamindb/__init__.py

@@ -108,7 +108,7 @@ Backwards compatibility.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.7a1"
+__version__ = "1.7.1"
 
 import warnings
 

{lamindb-1.7a1 → lamindb-1.7.1}/lamindb/core/_context.py

@@ -334,8 +334,8 @@ class Context:
         Args:
             transform: A transform (stem) `uid` (or record). If `None`, auto-creates a `transform` with its `uid`.
             project: A project (or its `name` or `uid`) for labeling entities.
-            space: A restricted space (or its `name` or `uid`) in which to store artifacts, collections, transforms, and runs.
-                Default: the `"All"` space.
+            space: A restricted space (or its `name` or `uid`) in which to store entities.
+                Default: the `"all"` space. Note that bionty entities ignore this setting and always get written to the `"all"` space.
                 If you want to manually move entities to a different space, set the `.space` field (:doc:`docs:access`).
             branch: A branch (or its `name` or `uid`) on which to store records.
             params: A dictionary of parameters to track for the run.

lamindb-1.7.1/lamindb/migrations/0115_alter_space_uid.py

@@ -0,0 +1,52 @@
+# Generated by Django 5.2 on 2025-07-06 23:09
+
+from django.db import migrations
+
+import lamindb.base.fields
+
+
+def extenddefault_values(apps, schema_editor):
+    """Lowercase default values for Space and Branch models."""
+    Space = apps.get_model("lamindb", "Space")
+    Branch = apps.get_model("lamindb", "Branch")
+
+    space = Space.objects.get(uid="a")
+    space.uid = 12 * "a"
+    space.save()
+
+    trash_branch = Branch.objects.get(uid="t")
+    trash_branch.uid = 12 * "t"
+    trash_branch.save()
+
+    archive_branch = Branch.objects.get(uid="a")
+    archive_branch.uid = 12 * "a"
+    archive_branch.save()
+
+    main_branch = Branch.objects.get(uid="m")
+    main_branch.uid = 12 * "m"
+    main_branch.save()
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("lamindb", "0114_alter_run__status_code"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="space",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_default="aaaaaaaaaaaa",
+                db_index=True,
+                default="aaaaaaaaaaaaa",
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.RunPython(
+            extenddefault_values,
+        ),
+    ]

lamindb-1.7a1/lamindb/migrations/0114_squashed.py → lamindb-1.7.1/lamindb/migrations/0115_squashed.py

@@ -136,6 +136,7 @@ class Migration(migrations.Migration):
         ("lamindb", "0112_alter_recordartifact_feature_and_more"),
         ("lamindb", "0113_lower_case_branch_and_space_names"),
         ("lamindb", "0114_alter_run__status_code"),
+        ("lamindb", "0115_alter_space_uid"),
     ]
 
     dependencies = []  # type: ignore
@@ -214,9 +215,9 @@ class Migration(migrations.Migration):
                     "uid",
                     lamindb.base.fields.CharField(
                         blank=True,
-                        db_default="A",
+                        db_default="aaaaaaaaaaaa",
                         db_index=True,
-                        default="A",
+                        default="aaaaaaaaaaaaa",
                         editable=False,
                         max_length=12,
                         unique=True,

{lamindb-1.7a1 → lamindb-1.7.1}/lamindb/models/sqlrecord.py

@@ -661,43 +661,53 @@ class BaseSQLRecord(models.Model, metaclass=Registry):
     def __init__(self, *args, **kwargs):
         skip_validation = kwargs.pop("_skip_validation", False)
         if not args:
-            if self.__class__.__name__ in {
-                "Artifact",
-                "Collection",
-                "Transform",
-                "Run",
-            }:
+            if (
+                issubclass(self.__class__, SQLRecord)
+                and self.__class__.__name__ != "Storage"
+                # do not save bionty entities in restricted spaces by default
+                and self.__class__.__module__ != "bionty.models"
+            ):
                 from lamindb import context as run_context
 
                 if run_context.space is not None:
+                    current_space = run_context.space
+                elif setup_settings.space is not None:
+                    current_space = setup_settings.space
+
+                if current_space is not None:
                     if "space_id" in kwargs:
                         # space_id takes precedence over space
                         # https://claude.ai/share/f045e5dc-0143-4bc5-b8a4-38309229f75e
                         if kwargs["space_id"] == 1:  # ignore default space
                             kwargs.pop("space_id")
-                            kwargs["space"] = run_context.space
+                            kwargs["space"] = current_space
                     elif "space" in kwargs:
                         if kwargs["space"] is None:
-                            kwargs["space"] = run_context.space
+                            kwargs["space"] = current_space
                     else:
-                        kwargs["space"] = run_context.space
+                        kwargs["space"] = current_space
             if issubclass(
                 self.__class__, SQLRecord
             ) and self.__class__.__name__ not in {"Storage", "Source"}:
                 from lamindb import context as run_context
 
                 if run_context.branch is not None:
+                    current_branch = run_context.branch
+                elif setup_settings.branch is not None:
+                    current_branch = setup_settings.branch
+
+                if current_branch is not None:
                     # branch_id takes precedence over branch
                     # https://claude.ai/share/f045e5dc-0143-4bc5-b8a4-38309229f75e
                     if "branch_id" in kwargs:
                         if kwargs["branch_id"] == 1:  # ignore default branch
                             kwargs.pop("branch_id")
-                            kwargs["branch"] = run_context.branch
+                            kwargs["branch"] = current_branch
                     elif "branch" in kwargs:
                         if kwargs["branch"] is None:
-                            kwargs["branch"] = run_context.branch
+                            kwargs["branch"] = current_branch
                     else:
-                        kwargs["branch"] = run_context.branch
+                        kwargs["branch"] = current_branch
             if skip_validation:
                 super().__init__(**kwargs)
             else:
@@ -952,8 +962,8 @@ class Space(BaseSQLRecord):
         editable=False,
         unique=True,
         max_length=12,
-        default="A",
-        db_default="A",
+        default="aaaaaaaaaaaaa",
+        db_default="aaaaaaaaaaaa",
         db_index=True,
     )
     """Universal id."""

{lamindb-1.7a1 → lamindb-1.7.1}/lamindb/setup/__init__.py

@@ -8,6 +8,7 @@ from lamindb_setup import (
 )
 
 from . import core, errors, types
+from ._switch import switch  # noqa: F401
 
 del connect  # we have this at the root level, hence, we don't want it here
 __doc__ = _lamindb_setup.__doc__.replace("lamindb_setup", "lamindb.setup")

lamindb-1.7.1/lamindb/setup/_switch.py

@@ -0,0 +1,16 @@
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+from lamindb_setup import settings
+
+if TYPE_CHECKING:
+    from lamindb.models import Branch, Space
+
+
+def switch(*, branch: str | Branch | None = None, space: str | Space | None = None):
+    """Switch to a branch or space, create if not exists."""
+    if branch is not None:
+        settings.branch = branch
+    if space is not None:
+        settings.space = space

{lamindb-1.7a1 → lamindb-1.7.1}/pyproject.toml

@@ -17,8 +17,8 @@ classifiers = [
 dependencies = [
     # Lamin PINNED packages
     "lamin_utils==0.15.0",
-    "lamin_cli==1.5.1",
-    "lamindb_setup[aws]==1.7.0",
+    "lamin_cli==1.5.4",
+    "lamindb_setup[aws]==1.7.3",
     # others
     "pyyaml",
     "pyarrow",

{lamindb-1.7a1 → lamindb-1.7.1}/tests/permissions/scripts/check_lamin_dev.py

@@ -18,7 +18,7 @@ ln.track(space=space_name)
 
 assert ln.context.space.name == space_name
 ulabel = ln.ULabel(name="My test ulabel in test space").save()
-assert ulabel.space.name == "All"  # ulabel should end up in common space
+assert ulabel.space.name == space_name  # ulabel should end up in the restricted space
 ulabel.delete()  # delete silently passes in case another worker deleted the ulabel
 assert (
     ln.context.transform.space.name == space_name