lamindb 1.5.1__tar.gz → 1.5.3__tar.gz

{lamindb-1.5.1 → lamindb-1.5.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.5.1
+Version: 1.5.3
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14

{lamindb-1.5.1 → lamindb-1.5.3}/lamindb/__init__.py

@@ -94,7 +94,7 @@ Low-level functionality.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.5.1"
+__version__ = "1.5.3"
 
 import warnings
 

{lamindb-1.5.1 → lamindb-1.5.3}/lamindb/curators/core.py

@@ -305,6 +305,8 @@ class SlotsCurator(Curator):
         for slot, curator in self._slots.items():
             logger.info(f"validating slot {slot} ...")
             curator.validate()
+        # set _is_validated to True as no slot raised an error
+        self._is_validated = True
 
     @doc_args(SAVE_ARTIFACT_DOCSTRING)
     def save_artifact(

{lamindb-1.5.1 → lamindb-1.5.3}/lamindb/models/artifact.py

@@ -2360,6 +2360,11 @@ class Artifact(Record, IsVersioned, TracksRun, TracksUpdates):
 
         if hasattr(self, "_memory_rep") and self._memory_rep is not None:
             access_memory = self._memory_rep
+            # SpatialData objects zarr stores are moved when saved
+            # SpatialData's __repr__ method attempts to access information from the old path
+            # Therefore, we need to update the in-memory path to the now moved Artifact storage path
+            if access_memory.__class__.__name__ == "SpatialData":
+                access_memory.path = self._cache_path
         else:
             filepath, cache_key = filepath_cache_key_from_artifact(
                 self, using_key=settings._using_key
@@ -2392,6 +2397,7 @@ class Artifact(Record, IsVersioned, TracksRun, TracksUpdates):
                 access_memory = load_to_memory(cache_path, **kwargs)
         # only call if load is successfull
         _track_run_input(self, is_run_input)
+
         return access_memory
 
     def cache(

{lamindb-1.5.1 → lamindb-1.5.3}/lamindb/models/schema.py

@@ -856,7 +856,7 @@ class Schema(Record, CanCurate, TracksRun):
         """Save."""
         from .save import bulk_create
 
-        if not self._state.adding:
+        if self.pk is not None:
             features = (
                 self._features[1]
                 if hasattr(self, "_features")

{lamindb-1.5.1 → lamindb-1.5.3}/tests/core/test_load.py

@@ -135,6 +135,16 @@ def test_load_spatialdata(get_small_sdata):
     assert artifact._local_filepath.resolve() == artifact.cache() == artifact.path
 
 
+def load_blobs__repr__():
+    example_blobs_sdata = ln.core.datasets.spatialdata_blobs()
+    blobs_af = ln.Artifact.from_spatialdata(
+        example_blobs_sdata, key="example_blobs.zarr"
+    ).save()
+    example_blobs_sdata = blobs_af.load()
+    # Must exist and not throw errors
+    assert example_blobs_sdata.__repr__
+
+
 def test_load_html(html_filepath):
     artifact = ln.Artifact(html_filepath, key=str(html_filepath))
     artifact.load()

{lamindb-1.5.1 → lamindb-1.5.3}/tests/curators/test_curators_examples.py

@@ -427,7 +427,10 @@ def test_anndata_curator_different_components(small_dataset1_schema: ln.Schema):
             assert isinstance(curator.slots["uns"], ln.curators.DataFrameCurator)
         artifact = ln.Artifact.from_anndata(
             adata, key="examples/dataset1.h5ad", schema=anndata_schema
-        ).save()
+        )
+        assert artifact._curator._is_validated  # important test, do not remove
+        artifact.save()
+        assert not hasattr(artifact, "_curator")  # test that curator is deleted
         assert artifact.schema == anndata_schema
         assert artifact.features.slots["var.T"].n == 3  # 3 genes get linked
         if add_comp == "obs":