lamindb 1.0rc1__tar.gz → 1.0.2__tar.gz

{lamindb-1.0rc1 → lamindb-1.0.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.0rc1
+Version: 1.0.2
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.13
@@ -10,7 +10,7 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Dist: lamin_utils==0.13.10
 Requires-Dist: lamin_cli==1.0.2
-Requires-Dist: lamindb_setup[aws]==1.0.1
+Requires-Dist: lamindb_setup[aws]==1.0.3
 Requires-Dist: pyarrow
 Requires-Dist: typing_extensions!=4.6.0
 Requires-Dist: python-dateutil

{lamindb-1.0rc1 → lamindb-1.0.2}/lamindb/__init__.py

@@ -53,7 +53,7 @@ Modules and settings.
 """
 
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.0rc1"
+__version__ = "1.0.2"
 
 from lamindb_setup._check_setup import InstanceNotSetupError as _InstanceNotSetupError
 from lamindb_setup._check_setup import _check_instance_setup

{lamindb-1.0rc1 → lamindb-1.0.2}/lamindb/migrations/0073_merge_ourprojects.py

@@ -2,6 +2,7 @@
 
 import django.core.validators
 import django.db.models.deletion
+import lamindb_setup
 from django.db import migrations, models
 
 import lamindb.base.fields
@@ -943,3 +944,9 @@ class Migration(migrations.Migration):
             migrate_data,
         ),
     ]
+
+
+if "ourprojects" in lamindb_setup.settings.instance.modules:
+    Migration.dependencies += [
+        ("ourprojects", "0003_alter_person_space_alter_project_space_and_more"),
+    ]

lamindb-1.0.2/lamindb/migrations/0080_polish_lamindbv1.py

@@ -0,0 +1,534 @@
+# Generated by Django 5.2 on 2025-01-20 04:42
+
+import django.db.models.deletion
+import django.db.models.functions.datetime
+from django.db import migrations, models
+
+import lamindb.base.fields
+import lamindb.base.ids
+import lamindb.base.users
+import lamindb.models
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("lamindb", "0079_alter_rundata_value_json_and_more"),
+    ]
+
+    operations = [
+        migrations.RemoveField(
+            model_name="project",
+            name="persons",
+        ),
+        migrations.AddField(
+            model_name="project",
+            name="is_type",
+            field=lamindb.base.fields.BooleanField(
+                blank=True, db_index=True, default=None, null=True
+            ),
+        ),
+        migrations.AddField(
+            model_name="project",
+            name="predecessors",
+            field=models.ManyToManyField(
+                related_name="successors", to="lamindb.project"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="artifact",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=None,
+                editable=False,
+                max_length=20,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="collection",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_20,
+                editable=False,
+                max_length=20,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="feature",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_12,
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="person",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_8,
+                editable=False,
+                max_length=8,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="project",
+            name="type",
+            field=lamindb.base.fields.ForeignKey(
+                blank=True,
+                null=True,
+                on_delete=django.db.models.deletion.PROTECT,
+                related_name="records",
+                to="lamindb.project",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="project",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_12,
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="reference",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_12,
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="run",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_20,
+                editable=False,
+                max_length=20,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="schema",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=None,
+                editable=False,
+                max_length=20,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="space",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_default="00000000",
+                db_index=True,
+                default="00000000",
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="storage",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_12,
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="tidytable",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_12,
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="transform",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=None,
+                editable=False,
+                max_length=16,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="ulabel",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=lamindb.base.ids.base62_8,
+                editable=False,
+                max_length=8,
+                unique=True,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="user",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_index=True,
+                default=None,
+                editable=False,
+                max_length=8,
+                unique=True,
+            ),
+        ),
+        migrations.CreateModel(
+            name="PersonProject",
+            fields=[
+                (
+                    "created_at",
+                    lamindb.base.fields.DateTimeField(
+                        blank=True,
+                        db_default=django.db.models.functions.datetime.Now(),
+                        db_index=True,
+                        editable=False,
+                    ),
+                ),
+                ("id", models.BigAutoField(primary_key=True, serialize=False)),
+                (
+                    "role",
+                    lamindb.base.fields.CharField(
+                        blank=True, default=None, max_length=255, null=True
+                    ),
+                ),
+                (
+                    "created_by",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        default=lamindb.base.users.current_user_id,
+                        editable=False,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="lamindb.user",
+                    ),
+                ),
+                (
+                    "person",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        on_delete=django.db.models.deletion.CASCADE,
+                        related_name="links_project",
+                        to="lamindb.person",
+                    ),
+                ),
+                (
+                    "project",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="links_person",
+                        to="lamindb.project",
+                    ),
+                ),
+                (
+                    "run",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        default=lamindb.models.current_run,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="lamindb.run",
+                    ),
+                ),
+            ],
+            options={
+                "unique_together": {("person", "project")},
+            },
+            bases=(lamindb.models.LinkORM, models.Model),
+        ),
+        migrations.AddField(
+            model_name="project",
+            name="people",
+            field=models.ManyToManyField(
+                related_name="projects",
+                through="lamindb.PersonProject",
+                to="lamindb.person",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="rundata",
+            name="run",
+            field=models.ForeignKey(
+                on_delete=django.db.models.deletion.CASCADE,
+                related_name="_rundata",
+                to="lamindb.run",
+            ),
+        ),
+        migrations.AddField(
+            model_name="schema",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="collection",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="feature",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="paramvalue",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="reference",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="run",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="run",
+            name="started_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="runparamvalue",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="schema",
+            name="name",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=150, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="space",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="tidytable",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="transform",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="transform",
+            name="updated_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="ulabel",
+            name="description",
+            field=lamindb.base.fields.CharField(
+                blank=True, db_index=True, default=None, max_length=255, null=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="user",
+            name="created_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="user",
+            name="updated_at",
+            field=lamindb.base.fields.DateTimeField(
+                blank=True,
+                db_default=django.db.models.functions.datetime.Now(),
+                db_index=True,
+                editable=False,
+            ),
+        ),
+        migrations.CreateModel(
+            name="RunULabel",
+            fields=[
+                ("id", models.BigAutoField(primary_key=True, serialize=False)),
+                (
+                    "created_at",
+                    lamindb.base.fields.DateTimeField(
+                        blank=True,
+                        db_default=django.db.models.functions.datetime.Now(),
+                        db_index=True,
+                        editable=False,
+                    ),
+                ),
+                (
+                    "created_by",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        default=lamindb.base.users.current_user_id,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="lamindb.user",
+                    ),
+                ),
+                (
+                    "run",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        on_delete=django.db.models.deletion.CASCADE,
+                        related_name="links_ulabel",
+                        to="lamindb.run",
+                    ),
+                ),
+                (
+                    "ulabel",
+                    lamindb.base.fields.ForeignKey(
+                        blank=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="links_run",
+                        to="lamindb.ulabel",
+                    ),
+                ),
+            ],
+            options={
+                "unique_together": {("run", "ulabel")},
+            },
+            bases=(models.Model, lamindb.models.LinkORM),
+        ),
+        migrations.AddField(
+            model_name="run",
+            name="ulabels",
+            field=models.ManyToManyField(
+                related_name="runs", through="lamindb.RunULabel", to="lamindb.ulabel"
+            ),
+        ),
+        migrations.RenameModel(
+            old_name="TidyTable",
+            new_name="FlexTable",
+        ),
+        migrations.RenameModel(
+            old_name="TidyTableData",
+            new_name="FlexTableData",
+        ),
+        migrations.RenameIndex(
+            model_name="flextable",
+            new_name="lamindb_fle_uid_e6f216_idx",
+            old_name="lamindb_tid_uid_3a6e54_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="flextable",
+            new_name="lamindb_fle_name_568594_idx",
+            old_name="lamindb_tid_name_50c5de_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="flextabledata",
+            new_name="lamindb_fle_tidytab_1674c1_idx",
+            old_name="lamindb_tid_tidytab_b35a4d_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="flextabledata",
+            new_name="lamindb_fle_feature_830e49_idx",
+            old_name="lamindb_tid_feature_5a0b1f_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="flextabledata",
+            new_name="lamindb_fle_param_i_4149cb_idx",
+            old_name="lamindb_tid_param_i_16c884_idx",
+        ),
+        migrations.RemoveField(
+            model_name="flextabledata",
+            name="value_upath",
+        ),
+        migrations.RemoveField(
+            model_name="rundata",
+            name="value_upath",
+        ),
+    ]