lamindb 0.76.1__tar.gz → 0.76.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (460) hide show
  1. {lamindb-0.76.1 → lamindb-0.76.2}/.github/workflows/build.yml +5 -5
  2. {lamindb-0.76.1 → lamindb-0.76.2}/.gitignore +1 -0
  3. {lamindb-0.76.1 → lamindb-0.76.2}/PKG-INFO +6 -14
  4. {lamindb-0.76.1 → lamindb-0.76.2}/README.md +1 -9
  5. {lamindb-0.76.1 → lamindb-0.76.2}/docs/introduction.ipynb +167 -154
  6. {lamindb-0.76.1 → lamindb-0.76.2}/docs/tutorial.ipynb +8 -7
  7. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/__init__.py +7 -4
  8. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_artifact.py +80 -53
  9. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_can_validate.py +10 -3
  10. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_collection.py +17 -18
  11. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_curate.py +33 -15
  12. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_feature.py +0 -49
  13. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_filter.py +6 -5
  14. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_finish.py +2 -2
  15. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_from_values.py +14 -10
  16. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_is_versioned.py +3 -5
  17. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_query_manager.py +2 -2
  18. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_query_set.py +33 -5
  19. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_record.py +29 -39
  20. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_save.py +2 -3
  21. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_transform.py +23 -10
  22. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_context.py +16 -11
  23. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_feature_manager.py +25 -8
  24. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_label_manager.py +1 -1
  25. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/__init__.py +1 -1
  26. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/_backed_access.py +2 -38
  27. lamindb-0.76.2/lamindb/core/storage/_tiledbsoma.py +229 -0
  28. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/paths.py +2 -6
  29. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/versioning.py +43 -47
  30. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/integrations/_vitessce.py +2 -0
  31. {lamindb-0.76.1 → lamindb-0.76.2}/pyproject.toml +4 -4
  32. lamindb-0.76.2/sub/bionty/README.md +14 -0
  33. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/__init__.py +11 -4
  34. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/_bionty.py +58 -49
  35. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/__init__.py +39 -7
  36. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/_ontology.py +55 -17
  37. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/_public_ontology.py +21 -17
  38. lamindb-0.76.2/sub/bionty/bionty/base/entities/_bfxpipeline.py +28 -0
  39. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_cellline.py +4 -2
  40. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_cellmarker.py +0 -1
  41. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_celltype.py +0 -1
  42. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_developmentalstage.py +1 -1
  43. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_drug.py +4 -1
  44. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_ethnicity.py +0 -1
  45. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_experimentalfactor.py +0 -3
  46. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_gene.py +0 -1
  47. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_organism.py +0 -1
  48. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_pathway.py +0 -2
  49. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_phenotype.py +0 -4
  50. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_protein.py +0 -1
  51. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/entities/_tissue.py +1 -1
  52. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/scripts/generate_bfxpipelines.py +18 -1
  53. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/base/sources.yaml +25 -2
  54. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/core/_add_ontology.py +1 -1
  55. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/core/_bionty.py +67 -2
  56. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/bionty/models.py +72 -8
  57. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/docs/guide/concepts.md +1 -1
  58. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/docs/guide/config.md +7 -14
  59. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/docs/guide/extend.md +1 -1
  60. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/docs/guide.md +1 -6
  61. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/pyproject.toml +6 -1
  62. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_bfxpipeline.py +2 -2
  63. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_biosample.py +2 -2
  64. lamindb-0.76.2/sub/bionty/tests/entities/test_cellline.py +42 -0
  65. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_cellmarker.py +3 -3
  66. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_celltype.py +4 -4
  67. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_developmentalstage.py +2 -2
  68. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_disease.py +6 -6
  69. lamindb-0.76.2/sub/bionty/tests/entities/test_drug.py +47 -0
  70. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_ethnicity.py +2 -2
  71. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_experimentalfactor.py +3 -3
  72. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_gene.py +4 -4
  73. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_organism.py +4 -4
  74. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_pathway.py +3 -3
  75. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_phenotype.py +6 -6
  76. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_protein.py +2 -2
  77. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/entities/test_tissue.py +2 -2
  78. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/test_bionty.py +12 -12
  79. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/test_lamindb.py +2 -2
  80. {lamindb-0.76.1 → lamindb-0.76.2}/sub/bionty/tests/test_ontology.py +2 -2
  81. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamin-cli/lamin_cli/_save.py +1 -1
  82. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/docs/hub-cloud/03-add-managed-storage.ipynb +1 -1
  83. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/docs/notebooks.md +2 -2
  84. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/lamindb_setup/__init__.py +1 -1
  85. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/lamindb_setup/_set_managed_storage.py +3 -3
  86. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/lamindb_setup/core/_hub_core.py +5 -5
  87. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lamindb-setup/lamindb_setup/core/_settings_storage.py +9 -5
  88. lamindb-0.76.2/sub/lamindb-setup/tests/hub-cloud/scripts/script-to-fail-managed-storage.py +26 -0
  89. lamindb-0.76.2/sub/lamindb-setup/tests/hub-cloud/test_fail_managed_storage.py +12 -0
  90. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/__init__.py +1 -1
  91. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/models.py +54 -67
  92. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_artifact.py +65 -48
  93. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_artifact_folders.py +1 -1
  94. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_can_validate.py +4 -4
  95. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_collection.py +25 -48
  96. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_context.py +1 -1
  97. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_db.py +1 -1
  98. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_feature.py +1 -1
  99. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_feature_manager.py +12 -9
  100. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_queryset.py +3 -3
  101. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_record.py +1 -1
  102. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_save.py +1 -1
  103. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_storage.py +107 -20
  104. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_transfer.py +1 -1
  105. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_transform.py +33 -22
  106. lamindb-0.76.2/tests/test_uid.py +39 -0
  107. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_versioning.py +10 -7
  108. lamindb-0.76.1/sub/bionty/README.md +0 -5
  109. lamindb-0.76.1/sub/bionty/bionty/base/entities/_bfxpipeline.py +0 -55
  110. lamindb-0.76.1/sub/bionty/docs/developer/updating_source.md +0 -21
  111. lamindb-0.76.1/sub/bionty/docs/guide/comparison.md +0 -37
  112. lamindb-0.76.1/sub/bionty/docs/guide/ontology.ipynb +0 -376
  113. lamindb-0.76.1/sub/bionty/docs/guide/search.ipynb +0 -25
  114. lamindb-0.76.1/sub/bionty/docs/guide/sources.ipynb +0 -276
  115. lamindb-0.76.1/sub/bionty/docs/guide/validate.ipynb +0 -50
  116. lamindb-0.76.1/sub/bionty/tests/entities/test_cellline.py +0 -22
  117. lamindb-0.76.1/sub/bionty/tests/entities/test_drug.py +0 -22
  118. lamindb-0.76.1/tests/test_uid.py +0 -23
  119. {lamindb-0.76.1 → lamindb-0.76.2}/.github/workflows/doc-changes.yml +0 -0
  120. {lamindb-0.76.1 → lamindb-0.76.2}/.gitmodules +0 -0
  121. {lamindb-0.76.1 → lamindb-0.76.2}/.pre-commit-config.yaml +0 -0
  122. {lamindb-0.76.1 → lamindb-0.76.2}/CONTRIBUTING.md +0 -0
  123. {lamindb-0.76.1 → lamindb-0.76.2}/LICENSE +0 -0
  124. {lamindb-0.76.1 → lamindb-0.76.2}/docs/api.md +0 -0
  125. {lamindb-0.76.1 → lamindb-0.76.2}/docs/arrays.ipynb +0 -0
  126. {lamindb-0.76.1 → lamindb-0.76.2}/docs/bio-registries.ipynb +0 -0
  127. {lamindb-0.76.1 → lamindb-0.76.2}/docs/bionty.md +0 -0
  128. {lamindb-0.76.1 → lamindb-0.76.2}/docs/changelog.md +0 -0
  129. {lamindb-0.76.1 → lamindb-0.76.2}/docs/curate-any.ipynb +0 -0
  130. {lamindb-0.76.1 → lamindb-0.76.2}/docs/curate-df.ipynb +0 -0
  131. {lamindb-0.76.1 → lamindb-0.76.2}/docs/curate.md +0 -0
  132. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/acid.ipynb +0 -0
  133. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/delete.ipynb +0 -0
  134. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/idempotency.ipynb +0 -0
  135. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/import-schema.ipynb +0 -0
  136. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/keep-artifacts-local.ipynb +0 -0
  137. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/key.ipynb +0 -0
  138. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/reference-field.ipynb +0 -0
  139. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/setup.ipynb +0 -0
  140. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/test_notebooks.py +0 -0
  141. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/track-run-inputs.ipynb +0 -0
  142. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq/visibility.ipynb +0 -0
  143. {lamindb-0.76.1 → lamindb-0.76.2}/docs/faq.md +0 -0
  144. {lamindb-0.76.1 → lamindb-0.76.2}/docs/guide.md +0 -0
  145. {lamindb-0.76.1 → lamindb-0.76.2}/docs/includes/features-lamindb.md +0 -0
  146. {lamindb-0.76.1 → lamindb-0.76.2}/docs/includes/features-laminhub.md +0 -0
  147. {lamindb-0.76.1 → lamindb-0.76.2}/docs/includes/installation.md +0 -0
  148. {lamindb-0.76.1 → lamindb-0.76.2}/docs/index.md +0 -0
  149. {lamindb-0.76.1 → lamindb-0.76.2}/docs/lamindb.md +0 -0
  150. {lamindb-0.76.1 → lamindb-0.76.2}/docs/query-search.md +0 -0
  151. {lamindb-0.76.1 → lamindb-0.76.2}/docs/readfcs.md +0 -0
  152. {lamindb-0.76.1 → lamindb-0.76.2}/docs/records.ipynb +0 -0
  153. {lamindb-0.76.1 → lamindb-0.76.2}/docs/rest.md +0 -0
  154. {lamindb-0.76.1 → lamindb-0.76.2}/docs/schemas.ipynb +0 -0
  155. {lamindb-0.76.1 → lamindb-0.76.2}/docs/setup.ipynb +0 -0
  156. {lamindb-0.76.1 → lamindb-0.76.2}/docs/signup-login.md +0 -0
  157. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/add-replace-cache.ipynb +0 -0
  158. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/anndata-accessor.ipynb +0 -0
  159. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/prepare-transfer-local-to-cloud.ipynb +0 -0
  160. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/test-files/iris.csv +0 -0
  161. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/test-files/iris.data +0 -0
  162. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/test-files/new_iris.csv +0 -0
  163. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/test_notebooks.py +0 -0
  164. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/transfer-local-to-cloud.ipynb +0 -0
  165. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/upload.ipynb +0 -0
  166. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage/vitessce.ipynb +0 -0
  167. {lamindb-0.76.1 → lamindb-0.76.2}/docs/storage.md +0 -0
  168. {lamindb-0.76.1 → lamindb-0.76.2}/docs/test_notebooks.py +0 -0
  169. {lamindb-0.76.1 → lamindb-0.76.2}/docs/track.ipynb +0 -0
  170. {lamindb-0.76.1 → lamindb-0.76.2}/docs/transfer.ipynb +0 -0
  171. {lamindb-0.76.1 → lamindb-0.76.2}/docs/tutorial2.ipynb +0 -0
  172. {lamindb-0.76.1 → lamindb-0.76.2}/docs/wetlab.md +0 -0
  173. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_feature_set.py +0 -0
  174. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_parents.py +0 -0
  175. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_run.py +0 -0
  176. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_storage.py +0 -0
  177. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_ulabel.py +0 -0
  178. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_utils.py +0 -0
  179. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/_view.py +0 -0
  180. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/__init__.py +0 -0
  181. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_data.py +0 -0
  182. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_mapped_collection.py +0 -0
  183. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_settings.py +0 -0
  184. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_sync_git.py +0 -0
  185. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/_track_environment.py +0 -0
  186. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/datasets/__init__.py +0 -0
  187. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/datasets/_core.py +0 -0
  188. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/datasets/_fake.py +0 -0
  189. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/exceptions.py +0 -0
  190. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/fields.py +0 -0
  191. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/schema.py +0 -0
  192. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/_anndata_accessor.py +0 -0
  193. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/_anndata_sizes.py +0 -0
  194. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/_valid_suffixes.py +0 -0
  195. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/_zarr.py +0 -0
  196. {lamindb-0.76.1 → lamindb-0.76.2}/lamindb/core/storage/objects.py +0 -0
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  371. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0037_rename_dataset_to_collection.py +0 -0
  372. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0038_alter_collection_artifact_alter_collection_artifacts_and_more.py +0 -0
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  374. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0040_alter_transform_type.py +0 -0
  375. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0041_remove_transform_short_name_transform_description_and_more.py +0 -0
  376. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0042_rename_run_at_run_started_at_run_finished_at.py +0 -0
  377. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0043_run_json.py +0 -0
  378. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0044_run_replicated_outputs_transform_ulabels_and_more.py +0 -0
  379. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0045_rename_replicated_outputs_run_replicated_output_artifacts_and_more.py +0 -0
  380. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0046_storage_instance_uid.py +0 -0
  381. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0047_featurevalue_artifactfeaturevalue_and_more.py +0 -0
  382. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0048_alter_artifactulabel_feature_and_more.py +0 -0
  383. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0049_rename_type_feature_dtype_and_more.py +0 -0
  384. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0050_artifactfeatureset_feature_ref_is_semantic_and_more.py +0 -0
  385. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0051_remove_feature_feature_sets_featuresetfeature_and_more.py +0 -0
  386. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0052_rename_feature_value_artifactfeaturevalue_featurevalue_and_more.py +0 -0
  387. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0052_squashed.py +0 -0
  388. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0053_alter_featureset_hash_alter_paramvalue_created_by_and_more.py +0 -0
  389. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0054_alter_feature_previous_runs_and_more.py +0 -0
  390. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0055_artifact_type_artifactparamvalue_and_more.py +0 -0
  391. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0056_rename_ulabel_ref_is_name_artifactulabel_label_ref_is_name_and_more.py +0 -0
  392. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0057_link_models_latest_report_and_others.py +0 -0
  393. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0058_artifact__actions_collection__actions.py +0 -0
  394. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0059_alter_artifact__accessor_alter_artifact__hash_type_and_more.py +0 -0
  395. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0060_alter_artifact__actions.py +0 -0
  396. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0061_alter_collection_meta_artifact_alter_run_environment_and_more.py +0 -0
  397. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0062_add_is_latest_field.py +0 -0
  398. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/migrations/0063_populate_latest_field.py +0 -0
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  400. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/mocks.py +0 -0
  401. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/types.py +0 -0
  402. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/lnschema_core/users.py +0 -0
  403. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/noxfile.py +0 -0
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  406. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/tests/test_integrity.py +0 -0
  407. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/tests/test_models.py +0 -0
  408. {lamindb-0.76.1 → lamindb-0.76.2}/sub/lnschema-core/tests/test_types.py +0 -0
  409. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/.github/workflows/build.yml +0 -0
  410. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/.github/workflows/doc-changes.yml +0 -0
  411. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/.gitignore +0 -0
  412. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/.pre-commit-config.yaml +0 -0
  413. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/README.md +0 -0
  414. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/docs/changelog.md +0 -0
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  422. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/tests/test_integrity.py +0 -0
  423. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/tests/test_notebooks.py +0 -0
  424. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/wetlab/__init__.py +0 -0
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  426. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/wetlab/migrations/0018_squashed.py +0 -0
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  430. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/wetlab/migrations/0021_alter_compoundtreatment_duration_unit_and_more.py +0 -0
  431. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/wetlab/migrations/__init__.py +0 -0
  432. {lamindb-0.76.1 → lamindb-0.76.2}/sub/wetlab/wetlab/models.py +0 -0
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  434. {lamindb-0.76.1 → lamindb-0.76.2}/tests/notebooks/duplicate/with-title-initialized-consecutive-finish.ipynb +0 -0
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  438. {lamindb-0.76.1 → lamindb-0.76.2}/tests/notebooks/with-title-initialized-consecutive-finish.ipynb +0 -0
  439. {lamindb-0.76.1 → lamindb-0.76.2}/tests/scripts/duplicate1/script-to-test-versioning.py +0 -0
  440. {lamindb-0.76.1 → lamindb-0.76.2}/tests/scripts/duplicate2/script-to-test-versioning.py +0 -0
  441. {lamindb-0.76.1 → lamindb-0.76.2}/tests/scripts/duplicate3/script-to-test-versioning.py +0 -0
  442. {lamindb-0.76.1 → lamindb-0.76.2}/tests/scripts/script-to-test-filename-change.py +0 -0
  443. {lamindb-0.76.1 → lamindb-0.76.2}/tests/scripts/script-to-test-versioning.py +0 -0
  444. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_cache.py +0 -0
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  446. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_data.py +0 -0
  447. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_delete.py +0 -0
  448. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_feature_set.py +0 -0
  449. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_from_values.py +0 -0
  450. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_label_manager.py +0 -0
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  455. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_run.py +0 -0
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  457. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_settings.py +0 -0
  458. {lamindb-0.76.1 → lamindb-0.76.2}/tests/test_ulabel.py +0 -0
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{lamindb-0.76.1 → lamindb-0.76.2}/.github/workflows/build.yml RENAMED
@@ -21,7 +21,7 @@ jobs:
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  - "faq"
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  - "storage"
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  - "cli"
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- timeout-minutes: 7
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+ timeout-minutes: 11
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  steps:
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  - uses: actions/checkout@v4
@@ -37,14 +37,14 @@ jobs:
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  with:
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  python-version: "3.11"
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  - name: cache pre-commit
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+ uses: actions/cache@v4
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  with:
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  key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }}
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  - name: cache postgres
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  if: ${{ matrix.group == 'faq' || matrix.group == 'unit' }}
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  id: cache-postgres
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- uses: actions/cache@v3
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+ uses: actions/cache@v4
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  with:
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  key: cache-postgres-0
@@ -64,7 +64,7 @@ jobs:
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  if: ${{ matrix.group == 'tutorial' }} # choose a fast-running a group
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  - run: nox -s "install_ci(group='${{ matrix.group }}')"
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+ - uses: aws-actions/configure-aws-credentials@v4
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{lamindb-0.76.1 → lamindb-0.76.2}/.gitignore RENAMED
@@ -62,6 +62,7 @@ test-search4
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+ run-tests
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  # General
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{lamindb-0.76.1 → lamindb-0.76.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: lamindb
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- Version: 0.76.1
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+ Version: 0.76.2
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  Summary: A data framework for biology.
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  Author-email: Lamin Labs <open-source@lamin.ai>
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  Requires-Python: >=3.8
@@ -9,9 +9,9 @@ Classifier: Programming Language :: Python :: 3.8
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- Requires-Dist: lamindb_setup==0.76.5
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- Requires-Dist: lamin_utils==0.13.2
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+ Requires-Dist: lnschema_core==0.73.2
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+ Requires-Dist: lamindb_setup==0.76.6
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+ Requires-Dist: lamin_utils==0.13.4
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  Requires-Dist: pyarrow
@@ -24,7 +24,7 @@ Requires-Dist: pandas
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+ Requires-Dist: bionty==0.48.3 ; extra == "bionty"
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@@ -57,13 +57,5 @@ Provides-Extra: zarr
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  # LaminDB - A data framework for biology
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- - Manage data & metadata with a unified Python API ("lakehouse").
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- - Track data lineage across notebooks & pipelines.
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- - Integrate registries for experimental metadata & in-house ontologies.
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- - Validate, standardize & annotate.
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- - Collaborate across distributed databases.
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-
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- ## Documentation
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-
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- Read the [docs](https://lamin.ai/docs).
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+ Read the [docs](https://docs.lamin.ai).
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{lamindb-0.76.1 → lamindb-0.76.2}/README.md RENAMED
@@ -4,12 +4,4 @@
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  # LaminDB - A data framework for biology
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- - Manage data & metadata with a unified Python API ("lakehouse").
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- - Track data lineage across notebooks & pipelines.
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- - Integrate registries for experimental metadata & in-house ontologies.
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- - Validate, standardize & annotate.
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- - Collaborate across distributed databases.
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-
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- ## Documentation
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-
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- Read the [docs](https://lamin.ai/docs).
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+ Read the [docs](https://docs.lamin.ai).