lamindb 0.64.0__tar.gz → 0.64.1__tar.gz

{lamindb-0.64.0 → lamindb-0.64.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.64.0
+Version: 0.64.1
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,7 +9,7 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Requires-Dist: lnschema_core==0.58.1
-Requires-Dist: lamindb_setup==0.61.3
+Requires-Dist: lamindb_setup==0.61.4
 Requires-Dist: lamin_utils==0.12.0
 Requires-Dist: lamin_cli==0.3.0
 Requires-Dist: rapidfuzz

{lamindb-0.64.0 → lamindb-0.64.1}/docs/changelog.md

@@ -4,11 +4,18 @@
 .. role:: small
 ```
 
-## 0.64 {small}`2023-12-13`
+## 0.64
 
-💥 Re-architect API around `Artifact` instead of `File` to model directories and directory-like array stores [PR1345](https://github.com/laminlabs/lamindb/pull/1345) [@falexwolf](https://github.com/falexwolf).
+### 0.64.1 {small}`2023-11-24`
 
-For file-based artifacts, this amounts to a mere rename from `File` to `Artifact`. You'll need to rename registry field containing the word `"file"` and replace it with `"artifact"`. Otherwise, your code will behave the same.
+- 🚸 Silence the httpx logger [PR1356](https://github.com/laminlabs/lamindb/pull/1356) [@falexwolf](https://github.com/falexwolf)
+- 🐛 Fix hash inference for cloud non-s3 objects and use stored gcs credentials [PR1355](https://github.com/laminlabs/lamindb/pull/1355) [@Koncopd](https://github.com/Koncopd)
+
+### 0.64.0 {small}`2023-11-24`
+
+🏗️ Replace `File` with `Artifact` to model directories and directory-like array stores [PR1345](https://github.com/laminlabs/lamindb/pull/1345) [@falexwolf](https://github.com/falexwolf).
+
+For artifacts that are simple files, rename `File` to `Artifact` along with the word `file` to `artifact` in registry fields. Otherwise, your code will behave the same.
 
 ## 0.63
 

{lamindb-0.64.0 → lamindb-0.64.1}/docs/features-laminhub.md

@@ -1,8 +1,7 @@
 Public demo instances to explore in the UI or load using the CLI via `lamin load owner/instance`:
 
-- [lamin.ai/laminlabs/lamindata](https://lamin.ai/laminlabs/lamindata) - Lamin's main demo instance
-- [lamin.ai/laminlabs/cellxgene](https://lamin.ai/laminlabs/cellxgene) - cellxgene ([guide](docs:cellxgene))
-- [lamin.ai/laminlabs/lamin-site-assets](https://lamin.ai/laminlabs/lamin-site-assets) - Lamin's website assets
+- [lamin.ai/laminlabs/lamindata](https://lamin.ai/laminlabs/lamindata) - A generic demo instance with various data types
+- [lamin.ai/laminlabs/cellxgene](https://lamin.ai/laminlabs/cellxgene) - An instance with CELLxGENE data ([guide](docs:cellxgene))
 
 LaminHub neither hosts data nor metadata, but connects to distributed storage locations & databases through LaminDB.
 

{lamindb-0.64.0 → lamindb-0.64.1}/lamindb/__init__.py

@@ -54,7 +54,7 @@ Modules & settings:
 
 """
 
-__version__ = "0.64.0"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.64.1"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import os as _os
 

{lamindb-0.64.0 → lamindb-0.64.1}/lamindb/_artifact.py

@@ -201,7 +201,9 @@ def get_stat_dir_gs(path: UPath) -> Tuple[int, str, str, int]:
 
     bucket, key, _ = path.fs.split_path(path.as_posix())
     # assuming this here is the fastest way of querying for many objects
-    client = gc_storage.Client.create_anonymous_client()
+    client = gc_storage.Client(
+        credentials=path.fs.credentials.credentials, project=path.fs.project
+    )
     objects = client.Bucket(bucket).list_blobs(prefix=key)
     sizes, md5s = [], []
     for object in objects:
@@ -230,18 +232,18 @@ def get_stat_or_artifact(
         return size, None, None, n_objects
     stat = path.stat()  # one network request
     if not isinstance(path, LocalPathClasses):
+        size, hash, hash_type = None, None, None
         if stat is not None:
             if "ETag" in stat:  # is file
                 size, hash, hash_type = get_stat_file_cloud(stat)
-            else:  # is directory
-                assert path.is_dir()  # try to remove this network request
+            elif path.is_dir():
                 if path.protocol == "s3":
                     size, hash, hash_type, n_objects = get_stat_dir_s3(path)
                 elif path.protocol == "gs":
                     size, hash, hash_type, n_objects = get_stat_dir_gs(path)
-        else:
+        if hash is None:
             logger.warning(f"did not add hash for {path}")
-            return size, None, None, n_objects
+            return size, hash, hash_type, n_objects
     else:
         if path.is_dir():
             md5s = []

{lamindb-0.64.0 → lamindb-0.64.1}/pyproject.toml

@@ -16,7 +16,7 @@ classifiers = [
 dependencies = [
     # Lamin PINNED packages
     "lnschema_core==0.58.1",
-    "lamindb_setup==0.61.3",
+    "lamindb_setup==0.61.4",
     "lamin_utils==0.12.0",
     "lamin_cli==0.3.0",
     # others

{lamindb-0.64.0 → lamindb-0.64.1}/sub/lamindb-setup/docs/changelog.md

@@ -3,6 +3,7 @@
 <!-- prettier-ignore -->
 Name | PR | Developer | Date | Version
 --- | --- | --- | --- | ---
+🚸 Silence httpx logger | [597](https://github.com/laminlabs/lamindb-setup/pull/597) | [falexwolf](https://github.com/falexwolf) | 2023-12-13 | 0.61.4
 🚸 Detect new schema modules | [596](https://github.com/laminlabs/lamindb-setup/pull/596) | [falexwolf](https://github.com/falexwolf) | 2023-12-13 | 0.61.3
 ⬆️ Bump supabase to latest version | [594](https://github.com/laminlabs/lamindb-setup/pull/594) | [falexwolf](https://github.com/falexwolf) | 2023-12-11 | 0.61.2
 ♻️ Defer storage API access to actual access | [593](https://github.com/laminlabs/lamindb-setup/pull/593) | [falexwolf](https://github.com/falexwolf) | 2023-12-07 | 0.61.1

{lamindb-0.64.0 → lamindb-0.64.1}/sub/lamindb-setup/lamindb_setup/__init__.py

@@ -44,7 +44,7 @@ Developer API.
 
 """
 
-__version__ = "0.61.3"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.61.4"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import sys
 from os import name as _os_name

{lamindb-0.64.0 → lamindb-0.64.1}/sub/lamindb-setup/lamindb_setup/_silence_loggers.py

@@ -22,6 +22,7 @@ def silence_loggers():
         set_stream_logger(name="botocore.utils", level=logging.WARNING)
         set_stream_logger(name="botocore.auth", level=logging.WARNING)
         set_stream_logger(name="botocore.endpoint", level=logging.WARNING)
+        set_stream_logger(name="httpx", level=logging.WARNING)
         try:
             import aiobotocore  # noqa