lamin_cli 1.4.2__tar.gz → 1.10.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (51) hide show
  1. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/.github/workflows/build.yml +3 -3
  2. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/.gitignore +3 -9
  3. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/.pre-commit-config.yaml +5 -5
  4. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/PKG-INFO +3 -2
  5. lamin_cli-1.10.0/lamin_cli/__init__.py +27 -0
  6. lamin_cli-1.10.0/lamin_cli/__main__.py +586 -0
  7. lamin_cli-1.10.0/lamin_cli/_annotate.py +47 -0
  8. lamin_cli-1.10.0/lamin_cli/_delete.py +44 -0
  9. lamin_cli-1.10.0/lamin_cli/_io.py +144 -0
  10. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/lamin_cli/_load.py +54 -50
  11. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/lamin_cli/_migration.py +4 -3
  12. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/lamin_cli/_save.py +123 -75
  13. lamin_cli-1.10.0/lamin_cli/_settings.py +96 -0
  14. lamin_cli-1.10.0/lamin_cli/clone/_clone_verification.py +56 -0
  15. lamin_cli-1.10.0/lamin_cli/clone/create_sqlite_clone_and_import_db.py +51 -0
  16. lamin_cli-1.10.0/lamin_cli/compute/__init__.py +0 -0
  17. lamin_cli-1.10.0/lamin_cli/urls.py +8 -0
  18. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/conftest.py +0 -1
  19. lamin_cli-1.10.0/tests/core/test_create_switch_delete_list_settings.py +83 -0
  20. lamin_cli-1.10.0/tests/core/test_io.py +48 -0
  21. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_load.py +24 -6
  22. lamin_cli-1.4.2/tests/core/test_cli.py → lamin_cli-1.10.0/tests/core/test_login.py +0 -16
  23. lamin_cli-1.4.2/tests/core/test_save_files.py → lamin_cli-1.10.0/tests/core/test_save_annotate_files.py +46 -4
  24. lamin_cli-1.4.2/tests/core/test_save_scripts.py → lamin_cli-1.10.0/tests/core/test_save_annotate_scripts.py +40 -7
  25. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_save_notebooks.py +9 -10
  26. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_save_r_code.py +1 -2
  27. lamin_cli-1.10.0/tests/scripts/testscript.py +2 -0
  28. lamin_cli-1.4.2/lamin_cli/__init__.py +0 -3
  29. lamin_cli-1.4.2/lamin_cli/__main__.py +0 -419
  30. lamin_cli-1.4.2/lamin_cli/_settings.py +0 -42
  31. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/.github/workflows/doc-changes.yml +0 -0
  32. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/LICENSE +0 -0
  33. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/README.md +0 -0
  34. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/lamin_cli/_cache.py +0 -0
  35. {lamin_cli-1.4.2/lamin_cli/compute → lamin_cli-1.10.0/lamin_cli/clone}/__init__.py +0 -0
  36. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/lamin_cli/compute/modal.py +0 -0
  37. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/noxfile.py +0 -0
  38. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/pyproject.toml +0 -0
  39. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_migrate.py +0 -0
  40. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_multi_process.py +0 -0
  41. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/core/test_parse_uid_from_code.py +0 -0
  42. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/modal/test_modal.py +0 -0
  43. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/notebooks/not-initialized.ipynb +0 -0
  44. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/notebooks/with-title-and-initialized-consecutive.ipynb +0 -0
  45. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/notebooks/with-title-and-initialized-non-consecutive.ipynb +0 -0
  46. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/merely-import-lamindb.py +0 -0
  47. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/run-track-and-finish-sync-git.py +0 -0
  48. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/run-track-and-finish.py +0 -0
  49. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/run-track-with-params.py +0 -0
  50. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/run-track.R +0 -0
  51. {lamin_cli-1.4.2 → lamin_cli-1.10.0}/tests/scripts/run-track.qmd +0 -0
{lamin_cli-1.4.2 → lamin_cli-1.10.0}/.github/workflows/build.yml RENAMED
@@ -11,7 +11,7 @@ jobs:
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  outputs:
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  matrix: ${{ steps.set-matrix.outputs.matrix }}
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  steps:
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- - uses: actions/checkout@v4
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+ - uses: actions/checkout@v5
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  with:
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  fetch-depth: 0
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@@ -54,12 +54,12 @@ jobs:
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  matrix: ${{fromJson(needs.pre-filter.outputs.matrix)}}
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  timeout-minutes: 20
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  steps:
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- - uses: actions/checkout@v4
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+ - uses: actions/checkout@v5
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  with:
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  submodules: recursive
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  fetch-depth: 0
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- - uses: actions/setup-python@v5
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+ - uses: actions/setup-python@v6
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  with:
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  python-version: 3.12
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{lamin_cli-1.4.2 → lamin_cli-1.10.0}/.gitignore RENAMED
@@ -22,7 +22,6 @@ docs/conf.py
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  lamindb/setup/.env
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  _secrets.py
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  _configuration.py
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- lamin.db
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  docs/generated/*
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  _docs_tmp*
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  docs/guide/Laminopathic_nuclei.jpg
@@ -41,14 +40,6 @@ docs/biology/test-flow/
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  docs/biology/test-scrna/
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  docs/biology/test-registries/
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  docs/biology/test-multimodal/
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- test-inherit1
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- test-inherit2
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- test-search0
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- test-search1
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- test-search2
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- test-search3
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- test-search4
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- test-search5
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  test.ipynb
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  # General
@@ -181,6 +172,9 @@ venv.bak/
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  .dmypy.json
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  dmypy.json
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+ # ruff
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+ .ruff_cache
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+
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  # Pyre type checker
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  .pyre/
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{lamin_cli-1.4.2 → lamin_cli-1.10.0}/.pre-commit-config.yaml RENAMED
@@ -1,6 +1,6 @@
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  repos:
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  - repo: https://github.com/pre-commit/pre-commit-hooks
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- rev: v4.5.0
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+ rev: v6.0.0
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  hooks:
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  - id: trailing-whitespace
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  - id: end-of-file-fixer
@@ -11,13 +11,13 @@ repos:
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  - id: check-yaml
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  - id: check-added-large-files
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  - repo: https://github.com/astral-sh/ruff-pre-commit
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- rev: v0.9.2
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+ rev: v0.14.6
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  hooks:
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- - id: ruff
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+ - id: ruff-check
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  args: [--fix, --exit-non-zero-on-fix, --unsafe-fixes]
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  - id: ruff-format
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  - repo: https://github.com/rbubley/mirrors-prettier
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- rev: v3.5.1
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+ rev: v3.6.2
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  hooks:
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  - id: prettier
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  - repo: https://github.com/kynan/nbstripout
@@ -31,7 +31,7 @@ repos:
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  tests
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  )
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  - repo: https://github.com/pre-commit/mirrors-mypy
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- rev: v1.15.0
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+ rev: v1.18.2
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  hooks:
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  - id: mypy
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  exclude: |
{lamin_cli-1.4.2 → lamin_cli-1.10.0}/PKG-INFO RENAMED
@@ -1,9 +1,10 @@
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- Metadata-Version: 2.3
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+ Metadata-Version: 2.4
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  Name: lamin_cli
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- Version: 1.4.2
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+ Version: 1.10.0
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  Summary: Lamin CLI.
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  Author-email: Lamin Labs <open-source@lamin.ai>
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  Description-Content-Type: text/markdown
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+ License-File: LICENSE
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  Requires-Dist: rich-click>=1.7
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  Project-URL: Home, https://github.com/laminlabs/lamin-cli
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lamin_cli-1.10.0/lamin_cli/__init__.py ADDED
@@ -0,0 +1,27 @@
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+ """Lamin CLI.
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+
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+ This is the command line interface for interacting with LaminDB & LaminHub.
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+
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+ The interface is defined in `__main__.py`.
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+ The root API here is used by LaminR to replicate the CLI functionality.
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+ """
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+
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+ __version__ = "1.10.0"
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+
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+ from lamindb_setup import disconnect, logout
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+ from lamindb_setup._connect_instance import _connect_cli as connect
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+ from lamindb_setup._init_instance import init
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+ from lamindb_setup._setup_user import login
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+
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+ from ._delete import delete
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+ from ._save import save
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+
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+ __all__ = [
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+ "save",
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+ "init",
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+ "connect",
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+ "delete",
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+ "login",
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+ "logout",
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+ "disconnect",
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+ ]