labnotes 0.0.59__tar.gz → 0.0.61__tar.gz

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Files changed (111) hide show
  1. {labnotes-0.0.59 → labnotes-0.0.61}/PKG-INFO +1 -1
  2. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/create_app.py +15 -0
  3. labnotes-0.0.61/src/labnotes/create_note.py +23 -0
  4. labnotes-0.0.61/src/labnotes/runner/new_param_run_id.py +18 -0
  5. labnotes-0.0.61/src/labnotes/runner/param_run_name.py +17 -0
  6. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/run_experiment.py +7 -5
  7. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/labnotes.css +2 -0
  8. labnotes-0.0.61/src/labnotes/static/new-note.js +12 -0
  9. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/note-edit.js +4 -0
  10. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/templates/experiment.html +3 -2
  11. labnotes-0.0.61/src/labnotes/wait_for_note.py +13 -0
  12. {labnotes-0.0.59 → labnotes-0.0.61}/.gitignore +0 -0
  13. {labnotes-0.0.59 → labnotes-0.0.61}/CHANGELOG.md +0 -0
  14. {labnotes-0.0.59 → labnotes-0.0.61}/MIGRATIONS.md +0 -0
  15. {labnotes-0.0.59 → labnotes-0.0.61}/README.md +0 -0
  16. {labnotes-0.0.59 → labnotes-0.0.61}/pyproject.toml +0 -0
  17. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/__init__.py +0 -0
  18. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/asset_url.py +0 -0
  19. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/cell_progress.py +0 -0
  20. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/check_counts.py +0 -0
  21. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/cli.py +0 -0
  22. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/context.md +0 -0
  23. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/context_guide.py +0 -0
  24. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/count_runs.py +0 -0
  25. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/create_experiment.py +0 -0
  26. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/data_html.py +0 -0
  27. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/default_config_text.py +0 -0
  28. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/default_counts.py +0 -0
  29. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/drain_watch.py +0 -0
  30. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/experiment_notes.py +0 -0
  31. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/experiment_progress.py +0 -0
  32. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/experiment_runs.py +0 -0
  33. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/experiments.py +0 -0
  34. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/file_changes.py +0 -0
  35. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/format_duration.py +0 -0
  36. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/format_value.py +0 -0
  37. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/group_runs.py +0 -0
  38. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/init.py +0 -0
  39. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/invocation_started.py +0 -0
  40. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/is_positive_int.py +0 -0
  41. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/list_experiments.py +0 -0
  42. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/list_runs.py +0 -0
  43. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/load_config.py +0 -0
  44. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/load_experiment.py +0 -0
  45. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/models.py +0 -0
  46. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/modes.py +0 -0
  47. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/nests_runs.py +0 -0
  48. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/notebook_kernel.py +0 -0
  49. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/output_html.py +0 -0
  50. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/parse_run_view.py +0 -0
  51. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/print_rows.py +0 -0
  52. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/python_blocks.py +0 -0
  53. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/read_config.py +0 -0
  54. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/read_path.py +0 -0
  55. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/render_markdown.py +0 -0
  56. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/__init__.py +0 -0
  57. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/describe_event.py +0 -0
  58. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/execute_run.py +0 -0
  59. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/hold_folder.py +0 -0
  60. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/new_run_id.py +0 -0
  61. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/new_stamped_run_id.py +0 -0
  62. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/param_args.py +0 -0
  63. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/param_grid.py +0 -0
  64. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/plan_runs.py +0 -0
  65. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/read_experiment_config.py +0 -0
  66. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/run_folder.py +0 -0
  67. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/run_headless.py +0 -0
  68. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/runs_parent.py +0 -0
  69. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/shell_command.py +0 -0
  70. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/start_experiment.py +0 -0
  71. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/stop_then_kill.py +0 -0
  72. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/wait_for_group.py +0 -0
  73. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/runner/write_run_json.py +0 -0
  74. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/save_note.py +0 -0
  75. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/saved_outputs.py +0 -0
  76. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/serve_app.py +0 -0
  77. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/server.py +0 -0
  78. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/sort_href.py +0 -0
  79. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/sql_quote.py +0 -0
  80. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/experiment.js +0 -0
  81. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/note-editor.js +0 -0
  82. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/row-link.js +0 -0
  83. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/run-cell.js +0 -0
  84. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/static/view-toggle.js +0 -0
  85. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/stop_idle_kernels.py +0 -0
  86. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/summarize_config.py +0 -0
  87. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/__init__.py +0 -0
  88. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/experiment_rows.py +0 -0
  89. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/file_prefix.py +0 -0
  90. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/iso_time.py +0 -0
  91. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/list_experiment_runs.py +0 -0
  92. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/open_tables.py +0 -0
  93. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/path_glob.py +0 -0
  94. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/path_pattern.py +0 -0
  95. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/read_experiment.py +0 -0
  96. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/read_file.py +0 -0
  97. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/read_run.py +0 -0
  98. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tables/summarize_experiments.py +0 -0
  99. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/templates/base.html +0 -0
  100. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/templates/editor_imports.html +0 -0
  101. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/templates/index.html +0 -0
  102. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/templates/macros.html +0 -0
  103. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/__init__.py +0 -0
  104. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/dim.py +0 -0
  105. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/format_elapsed.py +0 -0
  106. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/run_app.py +0 -0
  107. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/run_tui.py +0 -0
  108. {labnotes-0.0.59 → labnotes-0.0.61}/src/labnotes/tui/runs_table.py +0 -0
  109. {labnotes-0.0.59 → labnotes-0.0.61}/testing-conventions.toml +0 -0
  110. {labnotes-0.0.59 → labnotes-0.0.61}/tests/integration/conftest.py +0 -0
  111. {labnotes-0.0.59 → labnotes-0.0.61}/uv.lock +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.5
2
2
  Name: labnotes
3
- Version: 0.0.59
3
+ Version: 0.0.61
4
4
  Summary: Browse experiment designs, notes, and run data from a folder.
5
5
  Project-URL: Repository, https://github.com/thekevinscott/labnotes
6
6
  Author-email: Kevin Scott <me@thekevinscott.com>
@@ -18,6 +18,7 @@ from starlette.staticfiles import StaticFiles
18
18
  from starlette.templating import Jinja2Templates
19
19
 
20
20
  from labnotes.asset_url import asset_url
21
+ from labnotes.create_note import create_note
21
22
  from labnotes.drain_watch import drain_watch
22
23
  from labnotes.experiment_notes import experiment_notes
23
24
  from labnotes.file_changes import file_changes
@@ -32,6 +33,7 @@ from labnotes.save_note import save_note
32
33
  from labnotes.saved_outputs import saved_outputs
33
34
  from labnotes.stop_idle_kernels import stop_idle_kernels
34
35
  from labnotes.tables.open_tables import open_tables
36
+ from labnotes.wait_for_note import wait_for_note
35
37
 
36
38
  HERE = Path(__file__).parent
37
39
  templates = Jinja2Templates(directory=HERE / "templates")
@@ -97,6 +99,18 @@ def create_app(config: LabnotesConfig, kernel_idle_minutes: float) -> Starlette:
97
99
  raise HTTPException(415, "Send JSON")
98
100
  return await read_note(request)
99
101
 
102
+ async def post_note(request: Request) -> Response:
103
+ if request.headers.get("content-type") != "application/json":
104
+ raise HTTPException(415, "Send JSON")
105
+ name = request.path_params["name"]
106
+ filename = create_note(config, name)
107
+ if filename is None:
108
+ raise HTTPException(404, "No such experiment")
109
+ await wait_for_note(request.app.state.tables, config.root, name, filename)
110
+ page = request.url_for("experiment", name=name)
111
+ url = page.include_query_params(tab="notebooks", note=filename)
112
+ return JSONResponse({"url": f"{url.path}?{url.query}#edit"}, status_code=201)
113
+
100
114
  async def get_note(request: Request) -> Response:
101
115
  note = await read_note(request)
102
116
  return PlainTextResponse(note["content"], media_type="text/markdown")
@@ -140,6 +154,7 @@ def create_app(config: LabnotesConfig, kernel_idle_minutes: float) -> Starlette:
140
154
  Route("/", index),
141
155
  Route("/experiments/{name}", experiment),
142
156
  Route("/experiments/{name}/changes", changes),
157
+ Route("/experiments/{name}/notes", post_note, methods=["POST"]),
143
158
  Route("/experiments/{name}/notes/{note:path}", get_note),
144
159
  Route("/experiments/{name}/notes/{note:path}", put_note, methods=["PUT"]),
145
160
  Route(
@@ -0,0 +1,23 @@
1
+ from pathlib import Path
2
+
3
+ from labnotes.models import LabnotesConfig
4
+ from labnotes.tables.file_prefix import file_prefix
5
+
6
+
7
+ def create_note(config: LabnotesConfig, experiment: str) -> str | None:
8
+ def folder(template: str) -> Path:
9
+ return config.root / template.replace("{experiment}", experiment)
10
+
11
+ if experiment.startswith(".") or not folder(config.experiments).is_dir():
12
+ return None
13
+ notes = folder(file_prefix(config.files))
14
+ notes.mkdir(parents=True, exist_ok=True)
15
+ filename, n = "Untitled.md", 1
16
+ while True:
17
+ try:
18
+ with (notes / filename).open("x", encoding="utf-8") as note:
19
+ note.write("# Untitled\n")
20
+ return filename
21
+ except FileExistsError:
22
+ n += 1
23
+ filename = f"Untitled {n}.md"
@@ -0,0 +1,18 @@
1
+ import secrets
2
+ from collections.abc import Callable
3
+
4
+ from labnotes.runner.new_run_id import new_run_id
5
+ from labnotes.runner.param_run_name import param_run_name
6
+
7
+
8
+ def new_param_run_id(
9
+ params: dict[str, object],
10
+ choices: dict[str, list[object]],
11
+ taken: Callable[[str], bool],
12
+ ) -> str:
13
+ name = param_run_name(params, choices)
14
+ if not name:
15
+ return new_run_id(taken)
16
+ while taken(candidate := f"{name}-{secrets.token_hex(2)}"):
17
+ pass
18
+ return candidate
@@ -0,0 +1,17 @@
1
+ import os
2
+ import re
3
+
4
+ UNSAFE = re.compile(r"[^A-Za-z0-9]+")
5
+ LIMIT = 60
6
+
7
+
8
+ def param_run_name(params: dict[str, object], choices: dict[str, list[object]]) -> str:
9
+ parts = []
10
+ for name, values in choices.items():
11
+ if len(values) < 2:
12
+ continue
13
+ shared = os.path.commonprefix([str(value) for value in values])
14
+ cut = re.match(r".*[^A-Za-z0-9]", shared)
15
+ value = str(params[name])[cut.end() if cut else 0 :]
16
+ parts.append(UNSAFE.sub("-", value).strip("-"))
17
+ return "-".join(part for part in parts if part)[:LIMIT].strip("-")
@@ -12,7 +12,7 @@ from labnotes.models import (
12
12
  Report,
13
13
  )
14
14
  from labnotes.runner.execute_run import execute_run
15
- from labnotes.runner.new_run_id import new_run_id
15
+ from labnotes.runner.new_param_run_id import new_param_run_id
16
16
  from labnotes.runner.new_stamped_run_id import new_stamped_run_id
17
17
  from labnotes.runner.param_grid import param_grid
18
18
  from labnotes.runner.plan_runs import plan_runs
@@ -46,16 +46,18 @@ async def run_experiment(
46
46
 
47
47
  group = new_stamped_run_id(taken) if experiment.mode == "adhoc" else None
48
48
 
49
- def new_id() -> str:
49
+ def new_id(params: dict[str, object]) -> str:
50
50
  if group is None:
51
51
  return new_stamped_run_id(taken)
52
- return f"{group}/" + new_run_id(lambda run: taken(f"{group}/{run}"))
52
+ return f"{group}/" + new_param_run_id(
53
+ params, experiment.params, lambda run: taken(f"{group}/{run}")
54
+ )
53
55
 
54
56
  plan: list[Entry] = []
55
57
  for params in plan_runs(
56
58
  param_grid(experiment.params), experiment.repeats, finished
57
59
  ):
58
- run = new_id()
60
+ run = new_id(params)
59
61
  planned.add(run)
60
62
  plan.append((run, params))
61
63
  runs = [{"run": run, "params": params} for run, params in plan]
@@ -137,7 +139,7 @@ async def run_experiment(
137
139
  def retry(run: str) -> None:
138
140
  if stopping.is_set() or run not in ended:
139
141
  return
140
- again = new_id()
142
+ again = new_id(ended[run])
141
143
  planned.add(again)
142
144
  plan.append((again, ended[run]))
143
145
  report({"event": "retried", "run": run, "retry": again, "params": ended[run]})
@@ -243,6 +243,8 @@ h3 {
243
243
  .tabs a[aria-current="page"] { color: var(--ink); border-bottom-color: var(--accent); }
244
244
  .tabs .count { font-size: 0.8rem; color: var(--ink-3); margin-left: 0.3rem; }
245
245
  .tabs.sub { gap: 1.2rem; margin-top: -0.4rem; font-family: var(--mono); font-size: 0.8rem; }
246
+ .new-note { font: inherit; color: var(--ink-2); background: none; border: 0; padding: 0 0.2rem; cursor: pointer; }
247
+ .new-note:hover { color: var(--ink); }
246
248
 
247
249
  /* Runs table */
248
250
  .narrowed { color: var(--ink-2); font-size: 0.88rem; margin: 0 0 0.75rem; }
@@ -0,0 +1,12 @@
1
+ for (const button of document.querySelectorAll(".new-note")) {
2
+ button.addEventListener("click", async () => {
3
+ button.disabled = true;
4
+ const response = await fetch(button.dataset.url, {
5
+ method: "POST",
6
+ headers: { "Content-Type": "application/json" },
7
+ body: "{}",
8
+ });
9
+ if (response.ok) location.assign((await response.json()).url);
10
+ else button.disabled = false;
11
+ });
12
+ }
@@ -23,6 +23,10 @@ if (note) {
23
23
  editing = edit(note, prose, status);
24
24
  };
25
25
  prose.addEventListener("click", open);
26
+ if (location.hash === "#edit") {
27
+ history.replaceState(null, "", location.pathname + location.search);
28
+ open({ target: prose });
29
+ }
26
30
 
27
31
  new EventSource(note.dataset.changesUrl).addEventListener("message", (event) => {
28
32
  if (JSON.parse(event.data) !== note.dataset.note) return;
@@ -35,7 +35,7 @@
35
35
  {% set note = (e.notes | selectattr('name', 'equalto', chosen) | first) or (e.notes | first) %}
36
36
  {% if note %}
37
37
  <nav class="tabs sub">
38
- {% for each in e.notes %}<a href="?tab=notebooks&amp;note={{ each.name | urlencode }}"{% if each.name == note.name %} aria-current="page"{% endif %}>{{ each.name }}</a>{% endfor %}
38
+ {% for each in e.notes %}<a href="?tab=notebooks&amp;note={{ each.name | urlencode }}"{% if each.name == note.name %} aria-current="page"{% endif %}>{{ each.name }}</a>{% endfor %}<button type="button" class="new-note" data-url="{{ url_for('post_note', name=e.name) }}" aria-label="New note" title="New note">+</button>
39
39
  </nav>
40
40
  <article class="note" data-run-url="{{ url_for('run_block', name=e.name, note=note.name) }}" data-restart-url="{{ url_for('restart_kernel', name=e.name, note=note.name) }}" data-save-url="{{ url_for('put_note', name=e.name, note=note.name) }}" data-editor="{{ asset('note-editor.js') }}" data-changes-url="{{ url_for('changes', name=e.name) }}" data-note="{{ note.name }}">
41
41
  {% if note.runnable %}<header class="note-name"><button type="button" class="restart" title="Stop this note's Python kernel. The next Run starts a fresh one.">Restart</button></header>{% endif %}
@@ -47,8 +47,9 @@
47
47
  <script src="{{ asset('run-cell.js') }}" defer></script>
48
48
  <script type="module" src="{{ asset('note-edit.js') }}"></script>
49
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  {% else %}
50
- <p class="empty">No notebooks yet.</p>
50
+ <p class="empty">No notebooks yet. <button type="button" class="new-note" data-url="{{ url_for('post_note', name=e.name) }}" aria-label="New note" title="New note">+</button></p>
51
51
  {% endif %}
52
+ <script src="{{ asset('new-note.js') }}" defer></script>
52
53
  {% else %}
53
54
  <section id="runs">
54
55
  {% set view = e.run_view %}
@@ -0,0 +1,13 @@
1
+ import asyncio
2
+ from pathlib import Path
3
+
4
+ from dirsql import DirSQL
5
+
6
+ from labnotes.experiment_notes import experiment_notes
7
+
8
+
9
+ async def wait_for_note(tables: DirSQL, root: Path, experiment: str, note: str) -> None:
10
+ for _ in range(40):
11
+ if await experiment_notes(tables, root, experiment, note):
12
+ return
13
+ await asyncio.sleep(0.05)
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