labnotes 0.0.15__tar.gz → 0.0.17__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {labnotes-0.0.15 → labnotes-0.0.17}/PKG-INFO +7 -2
- {labnotes-0.0.15 → labnotes-0.0.17}/README.md +6 -1
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/context.md +14 -1
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/experiments.py +1 -2
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/models.py +1 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/read_experiment_config.py +7 -4
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/run_experiment.py +4 -4
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/run_headless.py +2 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/start_experiment.py +3 -2
- labnotes-0.0.17/src/labnotes/runner/stop_then_kill.py +15 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/open_tables.py +4 -1
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/summarize_experiments.py +2 -1
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tui/run_app.py +3 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/.gitignore +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/CHANGELOG.md +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/MIGRATIONS.md +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/pyproject.toml +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/__init__.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/asset_url.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/cell_progress.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/cli.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/context_guide.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/count_runs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/create_app.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/data_html.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/default_config_text.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/drain_watch.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/format_value.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/init.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/list_experiments.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/list_runs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/load_config.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/load_experiment.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/notebook_kernel.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/open_experiments.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/open_runs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/output_html.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/parse_run_view.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/pivot_cells.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/print_rows.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/python_blocks.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/read_config.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/read_design.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/read_note.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/read_path.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/render_markdown.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/run_columns.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/__init__.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/describe_event.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/execute_run.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/lock_path.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/new_run_id.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/param_args.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/param_grid.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/plan_runs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/run_folder.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/shell_command.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/runner/write_run_json.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/saved_outputs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/serve_app.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/server.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/sort_href.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/sql_quote.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/static/labnotes.css +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/static/row-link.js +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/static/run-cell.js +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/static/view-toggle.js +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/stop_idle_kernels.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/study_progress.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/summarize_design.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/__init__.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/experiment_rows.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/file_prefix.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/iso_time.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/list_experiment_runs.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/path_glob.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/path_pattern.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/read_experiment.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/read_file.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tables/read_run.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/templates/base.html +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/templates/experiment.html +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/templates/index.html +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/templates/macros.html +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tui/__init__.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tui/format_elapsed.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/src/labnotes/tui/run_tui.py +0 -0
- {labnotes-0.0.15 → labnotes-0.0.17}/uv.lock +0 -0
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Metadata-Version: 2.5
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Name: labnotes
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Version: 0.0.
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Version: 0.0.17
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Summary: Browse experiment designs, notes, and run data from a folder.
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Project-URL: Repository, https://github.com/thekevinscott/labnotes
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Author-email: Kevin Scott <me@thekevinscott.com>
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experiments folder:
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```toml
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name = "Model and effort"
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command = "uv run scripts/study.py --output {run_dir}"
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repeats = 5
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```
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`name` is optional: a display name for the experiment, shown in the live view
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and as `display_name` in `experiments`. The folder name stays the key, so
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renaming the experiment means editing `name`.
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that exit 0 count, so running again fills in what failed or never ran.
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Each run gets a new run folder. `command` runs in a shell from the root, with
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kills them. Closing the terminal or sending SIGTERM stops them the same way,
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then kills any still going 5 seconds later.
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- It exits 1 if any run failed.
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experiments folder:
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```toml
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name = "Model and effort"
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command = "uv run scripts/study.py --output {run_dir}"
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repeats = 5
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```
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`name` is optional: a display name for the experiment, shown in the live view
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and as `display_name` in `experiments`. The folder name stays the key, so
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renaming the experiment means editing `name`.
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```toml
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name = "Model and effort"
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command = "uv run scripts/study.py --output {run_dir}"
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```
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`name` is optional: a display name for the experiment, shown in the live view
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Each run gets a new run folder. `command` runs in a shell from the root, with
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and tables as JSON. labnotes writes `run.json` (params, created, ended, exit
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code), `stdout.log` and `stderr.log` to the run folder.
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- take each param as a `--name value` flag, parsing lists and tables from JSON;
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- take its output folder as an argument, passed in `command` as `{run_dir}`, and write everything it produces there;
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- exit non-zero when it fails, so the run counts as failed and runs again next time.
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In a terminal, `run` shows a live table of runs (status and time) and stays
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open when they finish; `q` quits. Elsewhere, or with `--no-tui`, it prints a
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then kills any still going 5 seconds later.
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10
|
|
|
10
11
|
|
|
11
12
|
def run_headless(start: Start) -> list[dict[str, object]]:
|
|
12
13
|
def listen(interrupt: Callable[[], None]) -> None:
|
|
13
14
|
asyncio.get_running_loop().add_signal_handler(signal.SIGINT, interrupt)
|
|
15
|
+
stop_then_kill(interrupt, signal.SIGTERM, signal.SIGHUP)
|
|
14
16
|
|
|
15
17
|
return asyncio.run(start(lambda event: click.echo(describe_event(event)), listen))
|
|
@@ -15,7 +15,7 @@ def start_experiment(
|
|
|
15
15
|
name: str,
|
|
16
16
|
experiment_config: Path | None,
|
|
17
17
|
concurrency: int,
|
|
18
|
-
drive: Callable[[Start], list[dict[str, object]]],
|
|
18
|
+
drive: Callable[[Start, str], list[dict[str, object]]],
|
|
19
19
|
) -> list[dict[str, object]]:
|
|
20
20
|
if experiment_config is None:
|
|
21
21
|
folder = config.experiments.replace("{experiment}", name)
|
|
@@ -27,6 +27,7 @@ def start_experiment(
|
|
|
27
27
|
lock.parent.mkdir(parents=True, exist_ok=True)
|
|
28
28
|
try:
|
|
29
29
|
with FileLock(lock, blocking=False):
|
|
30
|
-
|
|
30
|
+
start = partial(run_experiment, config, name, experiment, concurrency)
|
|
31
|
+
return drive(start, experiment.name or name)
|
|
31
32
|
except Timeout as error:
|
|
32
33
|
raise ValueError(f"{name} is already running ({lock} is held).") from error
|
|
@@ -0,0 +1,15 @@
|
|
|
1
|
+
import asyncio
|
|
2
|
+
from collections.abc import Callable
|
|
3
|
+
|
|
4
|
+
GRACE_SECONDS = 5
|
|
5
|
+
|
|
6
|
+
|
|
7
|
+
def stop_then_kill(interrupt: Callable[[], None], *signals: int) -> None:
|
|
8
|
+
loop = asyncio.get_running_loop()
|
|
9
|
+
|
|
10
|
+
def stop() -> None:
|
|
11
|
+
interrupt()
|
|
12
|
+
loop.call_later(GRACE_SECONDS, interrupt)
|
|
13
|
+
|
|
14
|
+
for signal_number in signals:
|
|
15
|
+
loop.add_signal_handler(signal_number, stop)
|
|
@@ -12,7 +12,10 @@ from labnotes.tables.read_run import read_run
|
|
|
12
12
|
EXPERIMENTS = """
|
|
13
13
|
CREATE TABLE experiment_configs (experiment TEXT PRIMARY KEY, config TEXT);
|
|
14
14
|
CREATE VIEW experiments AS
|
|
15
|
-
SELECT
|
|
15
|
+
SELECT
|
|
16
|
+
names.name,
|
|
17
|
+
coalesce(experiment_configs.config ->> 'name', names.name) AS display_name,
|
|
18
|
+
experiment_configs.config
|
|
16
19
|
FROM (
|
|
17
20
|
SELECT experiment AS name FROM experiment_configs
|
|
18
21
|
UNION SELECT experiment FROM files
|
|
@@ -1,3 +1,4 @@
|
|
|
1
|
+
import signal
|
|
1
2
|
import time
|
|
2
3
|
from collections.abc import Callable
|
|
3
4
|
|
|
@@ -7,6 +8,7 @@ from textual.widgets import DataTable, Footer, Header, Static
|
|
|
7
8
|
|
|
8
9
|
from labnotes.models import Start
|
|
9
10
|
from labnotes.runner.describe_event import describe_event
|
|
11
|
+
from labnotes.runner.stop_then_kill import stop_then_kill
|
|
10
12
|
from labnotes.runner.param_args import param_args
|
|
11
13
|
from labnotes.tui.format_elapsed import format_elapsed
|
|
12
14
|
|
|
@@ -50,6 +52,7 @@ class RunApp(App[None]):
|
|
|
50
52
|
|
|
51
53
|
def listen(self, interrupt: Callable[[], None]) -> None:
|
|
52
54
|
self.interrupt = interrupt
|
|
55
|
+
stop_then_kill(interrupt, signal.SIGTERM, signal.SIGHUP)
|
|
53
56
|
|
|
54
57
|
def show_event(self, event: dict[str, object]) -> None:
|
|
55
58
|
table = self.query_one(DataTable)
|
|
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