labda 0.0.11__tar.gz → 0.0.13.dev0__tar.gz

labda-0.0.13.dev0/.github/workflows/ci.yml

@@ -0,0 +1,28 @@
+name: ci
+on:
+  push:
+    branches:
+      - dev
+permissions:
+  contents: write
+jobs:
+  deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Configure Git Credentials
+        run: |
+          git config user.name github-actions[bot]
+          git config user.email 41898282+github-actions[bot]@users.noreply.github.com
+      - uses: actions/setup-python@v4
+        with:
+          python-version: 3.x
+      - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV
+      - uses: actions/cache@v3
+        with:
+          key: mkdocs-material-${{ env.cache_id }}
+          path: .cache
+          restore-keys: |
+            mkdocs-material-
+      - run: pip install mkdocs-material mkdocs-glightbox mkdocstrings[python] black
+      - run: mkdocs gh-deploy --force

labda-0.0.13.dev0/.gitignore

@@ -0,0 +1,172 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+
+# Poetry
+poetry.lock
+
+# Custom
+temp
+examples/cache
+.ruff_cache
+*.parquet
+cache
+prepared
+diaries

labda-0.0.13.dev0/.pre-commit-config.yaml

@@ -0,0 +1,24 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: check-case-conflict
+      - id: check-toml
+      - id: end-of-file-fixer
+      - id: mixed-line-ending
+        args: [--fix=auto]
+      - id: fix-byte-order-marker
+      - id: trailing-whitespace
+        args: [--markdown-linebreak-ext=md]
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.6.7
+    hooks:
+      - id: ruff
+        args: [--fix]
+      - id: ruff-format
+
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.7.1
+    hooks:
+      - id: nbstripout

{labda-0.0.11 → labda-0.0.13.dev0}/CHANGELOG.md

@@ -7,4 +7,4 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
-## [0.0.11] - 2024-09-08
+## [0.0.13] - 2025-05-12

labda-0.0.13.dev0/CONTRIBUTING.md

@@ -0,0 +1,8 @@
+# Contributing to LABDA
+
+1. Use uv
+
+## Raising Pull Requests
+
+1. Use pre-commit: `pre-commit`
+2. Use commitzen: `cz commit`

labda-0.0.13.dev0/PKG-INFO

@@ -0,0 +1,52 @@
+Metadata-Version: 2.4
+Name: labda
+Version: 0.0.13.dev0
+Summary: Library for Advanced Behavioural Data Analysis
+Project-URL: homepage, https://labda.josefheidler.cz
+Project-URL: repository, https://github.com/josefheidler/labda
+Project-URL: documentation, https://labda.josefheidler.cz
+Author-email: Josef Heidler <jheidler@health.sdu.dk>
+Maintainer-email: Josef Heidler <jheidler@health.sdu.dk>
+License-Expression: MIT
+License-File: LICENSE.md
+Keywords: accelerometer,analysis,behaviour,data,gps,health,movement,spatial,transport
+Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Environment :: Console
+Classifier: Intended Audience :: Education
+Classifier: Intended Audience :: Science/Research
+Classifier: Operating System :: OS Independent
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.12
+Requires-Dist: geopandas>=1.0.1
+Requires-Dist: geopy>=2.4.1
+Requires-Dist: kaleido==0.2.1
+Requires-Dist: mappymatch>=0.6.0
+Requires-Dist: openmovement
+Requires-Dist: openpyxl>=3.1.5
+Requires-Dist: osmnx>=2.0.1
+Requires-Dist: pandas>=2.2.3
+Requires-Dist: pandera[geopandas]>=0.23.1
+Requires-Dist: pillow>=11.1.0
+Requires-Dist: plotly>=5.24.1
+Requires-Dist: pyarrow>=18.1.0
+Requires-Dist: pydantic[email]>=2.10.3
+Requires-Dist: pydeck>=0.9.1
+Requires-Dist: pygt3x>=0.7.1
+Requires-Dist: pyproj>=3.7.0
+Requires-Dist: requests>=2.32.3
+Requires-Dist: scikit-learn>=1.6.1
+Requires-Dist: scipy>=1.15.0
+Requires-Dist: shapely>=2.0.6
+Requires-Dist: timezonefinder>=6.5.7
+Requires-Dist: tqdm>=4.67.1
+Description-Content-Type: text/markdown
+
+[![pypi](https://img.shields.io/pypi/v/labda.svg)](https://pypi.python.org/pypi/labda)
+[![downloads](https://static.pepy.tech/badge/labda/month)](https://pepy.tech/project/labda)
+[![versions](https://img.shields.io/pypi/pyversions/labda.svg)](https://github.com/josefheidler/labda)
+[![discord](https://img.shields.io/discord/1165947556807848016)](https://discord.gg/qu6ax5Q64j)
+
+# LABDA: Library for Advanced Behavioural Data Analysis
+
+LABDA, a Python package built for health researchers, transforms raw movement data into compelling stories about human behaviour.
+

labda-0.0.13.dev0/README.md

@@ -0,0 +1,9 @@
+[![pypi](https://img.shields.io/pypi/v/labda.svg)](https://pypi.python.org/pypi/labda)
+[![downloads](https://static.pepy.tech/badge/labda/month)](https://pepy.tech/project/labda)
+[![versions](https://img.shields.io/pypi/pyversions/labda.svg)](https://github.com/josefheidler/labda)
+[![discord](https://img.shields.io/discord/1165947556807848016)](https://discord.gg/qu6ax5Q64j)
+
+# LABDA: Library for Advanced Behavioural Data Analysis
+
+LABDA, a Python package built for health researchers, transforms raw movement data into compelling stories about human behaviour.
+

labda-0.0.13.dev0/ROADMAP.md

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+
+## Q2 2025 (Apr-Jun)
+
+- Release of documentation.
+- Lot of core functions.
+- Parsers: Traccar, Sens, Actigraph (CSV), Qstarz (CSV), Axivity (CWA).
+- Spatial (trips, transportation, locations, imputation).
+- Accelerometer (Actigraph counts).

labda-0.0.13.dev0/docs/CNAME

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+labda.josefheidler.cz

labda-0.0.13.dev0/docs/abbreviations.md

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+*[API]: Application Programming Interface
+*[CRS]: Coordinate Reference System
+*[LABDA]: Library for Advanced Behavioural Data Analysis
+*[NA]: Not Available (missing values)

labda-0.0.13.dev0/docs/changelog.md

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+--8<-- "CHANGELOG.md"

labda-0.0.13.dev0/docs/concepts/index.md

@@ -0,0 +1 @@
+# Concepts

labda-0.0.13.dev0/docs/contributing.md

@@ -0,0 +1 @@
+--8<-- "CONTRIBUTING.md"

labda-0.0.13.dev0/docs/index.md

@@ -0,0 +1,6 @@
+---
+hide:
+  - toc
+---
+
+--8<-- "README.md"

labda-0.0.13.dev0/docs/overrides/main.html

@@ -0,0 +1,5 @@
+{% extends "base.html" %}
+
+{% block announce %}
+LABDA is currently under development and may undergo significant API changes that could result in breaking changes.
+{% endblock %}

labda-0.0.13.dev0/docs/reference/parsers/actigraph.md

@@ -0,0 +1,4 @@
+::: labda.parsers.Actigraph
+    options:
+        members:
+        - from_csv

labda-0.0.13.dev0/docs/reference/parsers/qstarz.md

@@ -0,0 +1,4 @@
+::: labda.parsers.Qstarz
+    options:
+        members:
+        - from_csv

labda-0.0.13.dev0/docs/reference/subject.md

@@ -0,0 +1,21 @@
+# Subject
+
+::: labda.Subject
+    options:
+        inherited_members: true
+        members:
+        - from_parquet
+        - to_parquet
+        - set_timezone
+        - resample
+        - add_vector_magnitude
+        - get_wear_times
+        - detect_wear
+        - detect_indoor
+        - set_crs
+        - detect_activity_intensity
+        - merge
+        - detect_trips
+        - detect_transportation
+        - get_summary
+        - plot

labda-0.0.13.dev0/docs/roadmap.md

@@ -0,0 +1 @@
+--8<-- "ROADMAP.md"