labcode 0.1.3__tar.gz → 0.1.4__tar.gz

{labcode-0.1.3 → labcode-0.1.4}/.github/workflows/ci.yml

@@ -43,3 +43,17 @@ jobs:
           cache: pip
       - run: pip install -e ".[dev]"
       - run: mypy
+
+  # `uv sync --extra sila2` is how a development environment gets built here, and
+  # uv.lock records what it produces. This asserts the lock still agrees with
+  # pyproject.toml, so a raised dependency floor or a new extra cannot leave the
+  # environment pinned to versions the project no longer accepts. It deliberately
+  # does not ask whether newer releases exist -- that is `uv lock --upgrade`, run
+  # when someone means to move. The jobs above stay on pip so they keep testing
+  # against the latest released siblings.
+  lock:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v7
+      - run: uv lock --check

labcode-0.1.4/MANIFEST.in

@@ -0,0 +1,6 @@
+# setuptools-scm hands the sdist every file git tracks, and uv.lock is tracked so
+# that the versions a developer actually gets stay reviewable. That lock describes
+# the development environment only -- an installer resolves the wheel's dependency
+# metadata and never reads it -- so it has no business in the distribution, where
+# it would roughly double the sdist. Excluded here; still in the repository.
+exclude uv.lock

{labcode-0.1.3 → labcode-0.1.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: labcode
-Version: 0.1.3
+Version: 0.1.4
 Summary: labcode -- a dialect wrapper over the Object-Flow Programming Language toolchain
 Author-email: Kazunari Kaizu <kwaizu@gmail.com>
 License-Expression: MIT

{labcode-0.1.3 → labcode-0.1.4}/labcode/run_cli.py

@@ -67,6 +67,14 @@ def _build_parser() -> argparse.ArgumentParser:
     )
     p.add_argument("-o", "--output", metavar="OUT", help="write the final status YAML here")
     p.add_argument("--boundary-out", metavar="FILE", help="write the result boundary document here")
+    p.add_argument(
+        # Same flag and meaning as `ofp-run run --observation-out`: the value layer's
+        # companion to the status document, streamed one YAML document per completed
+        # activity. Forwarded verbatim to `run_labcode`, which already took the argument.
+        "--observation-out", metavar="FILE",
+        help="stream the observation document here (YAML multi-document): each completed"
+             " activity's input/output view values, appended as it finishes",
+    )
     p.add_argument(
         "--no-validate", action="store_true",
         help="skip the ofplang-validate front-door check of the workflow",
@@ -202,6 +210,7 @@ def main(argv: Sequence[str] | None = None) -> int:
             poll_interval=args.poll_interval,
             seconds_per_tick=args.seconds_per_tick,
             speed=args.speed,
+            observation_out=args.observation_out,
             probe=not args.no_probe,
             on_availability_change=report_availability,
             on_cadence_slip=report_cadence_slip,

{labcode-0.1.3 → labcode-0.1.4}/labcode.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: labcode
-Version: 0.1.3
+Version: 0.1.4
 Summary: labcode -- a dialect wrapper over the Object-Flow Programming Language toolchain
 Author-email: Kazunari Kaizu <kwaizu@gmail.com>
 License-Expression: MIT

{labcode-0.1.3 → labcode-0.1.4}/labcode.egg-info/SOURCES.txt

@@ -1,5 +1,6 @@
 .gitignore
 LICENSE
+MANIFEST.in
 README.md
 SPECIFICATIONS.md
 pyproject.toml

{labcode-0.1.3 → labcode-0.1.4}/labcode.egg-info/scm_file_list.json

@@ -1,9 +1,11 @@
 {
   "files": [
+    "MANIFEST.in",
     "pyproject.toml",
     "SPECIFICATIONS.md",
     "LICENSE",
     "README.md",
+    "uv.lock",
     ".gitignore",
     ".github/workflows/ci.yml",
     ".github/workflows/publish.yml",

labcode-0.1.4/labcode.egg-info/scm_version.json

@@ -0,0 +1,8 @@
+{
+  "tag": "0.1.4",
+  "distance": 0,
+  "node": "gf78971be7ff6c3a8436ae98fd3aa5fa00a73442b",
+  "dirty": false,
+  "branch": "HEAD",
+  "node_date": "2026-08-07"
+}

{labcode-0.1.3 → labcode-0.1.4}/tests/test_run_cli.py

@@ -82,6 +82,32 @@ def test_e2e_lc_run_stamps_deterministic_object_ids(tmp_path):
     assert doc1 == yaml.safe_load(rb2.read_text(encoding="utf-8"))  # deterministic
 
 
+def test_cli_observation_out_streams_the_observation_document(tmp_path):
+    # `--observation-out` forwards to the runner's observation sink, so the flag produces
+    # the same YAML multi-document stream `ofp-run run --observation-out` does: a header
+    # naming the schema, one entry per completed activity, and a trailer.
+    pytest.importorskip("ofplang.schedule", reason="ofplang-schedule not installed")
+    import yaml
+
+    obs = tmp_path / "observation.yaml"
+    code = run_cli.main([
+        str(EXAMPLES / "plate_line.workflow.yaml"),
+        "--env", str(EXAMPLES / "plate_line.env.yaml"),
+        "--boundary", str(EXAMPLES / "plate_line.boundary.yaml"),
+        "--seconds-per-tick", "0.001",
+        "-o", str(tmp_path / "status.yaml"),
+        "--observation-out", str(obs),
+    ])
+    assert code == 0
+
+    docs = list(yaml.safe_load_all(obs.read_text(encoding="utf-8")))
+    assert docs[0]["schema"] == "ofplang-observation/v0"
+    assert docs[-1]["final"] is True and docs[-1]["outcome"] == "completed"
+    # The Plate the workflow creates is traceable by its `_id` through the entries.
+    processed = [d for d in docs[1:-1] if d.get("kind") == "processing"]
+    assert processed, "expected at least one completed processing activity"
+
+
 def test_e2e_lc_run_expands_imported_object_types_and_stamps_ids(tmp_path):
     # `$import` and `_id` compose: the object types (Plate/Tube) are moved into an
     # imported fragment, so the shared front door must expand it first; then

labcode-0.1.3/labcode.egg-info/scm_version.json

@@ -1,8 +0,0 @@
-{
-  "tag": "0.1.3",
-  "distance": 0,
-  "node": "g8b62fc33d3a9f69848967e991b6cea2577cd74a5",
-  "dirty": false,
-  "branch": "HEAD",
-  "node_date": "2026-08-04"
-}