kssdtree 2.0.6__tar.gz → 2.0.7__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {kssdtree-2.0.6/kssdtree.egg-info → kssdtree-2.0.7}/PKG-INFO +1 -1
- {kssdtree-2.0.6 → kssdtree-2.0.7/kssdtree.egg-info}/PKG-INFO +1 -1
- {kssdtree-2.0.6 → kssdtree-2.0.7}/setup.py +1 -1
- {kssdtree-2.0.6 → kssdtree-2.0.7}/toolutils.py +1 -1
- {kssdtree-2.0.6 → kssdtree-2.0.7}/MANIFEST.in +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/README.md +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/align.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/buildtree.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/bytescale.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/cluster.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/co2mco.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/command_composite.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/command_dist.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/command_dist_wrapper.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/command_set.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/command_shuffle.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/distancemat.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnj.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/bytescale.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/dnj.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/filebuff.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/hclust.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/matrix.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/mman.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/nj.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/nwck.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/pherror.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/phy.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/qseqs.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/str.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/threader.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/tmp.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/dnjheaders/vector.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/filebuff.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/global_basic.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/hclust.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/iseq2comem.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/co2mco.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/command_composite.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/command_dist.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/command_dist_wrapper.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/command_set.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/command_shuffle.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/global_basic.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/iseq2comem.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/mman.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdheaders/mytime.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.egg-info/SOURCES.txt +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.egg-info/dependency_links.txt +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.egg-info/not-zip-safe +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.egg-info/requires.txt +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.egg-info/top_level.txt +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/kssdtree.py +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/matrix.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/mman.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/mytime.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/nj.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/align.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/buildtree.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/cluster.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/distancemat.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/sequence.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/tree.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/njheaders/util.h +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/nwck.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/pherror.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/phy.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/pydnj.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/pykssd.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/pynj.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/qseqs.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/sequence.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/setup.cfg +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/str.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/tmp.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/tree.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/util.c +0 -0
- {kssdtree-2.0.6 → kssdtree-2.0.7}/vector.c +0 -0
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Metadata-Version: 2.1
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Name: kssdtree
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Version: 2.0.
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Version: 2.0.7
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Summary: Kssdtree is a versatile Python package for phylogenetic analysis. It also provides one-stop tree construction and visualization. It can handle DNA sequences of both fasta or fastq format, whether gzipped or not.
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Home-page: https://github.com/yhlink/kssdtree
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Download-URL: https://pypi.org/project/kssdtree
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Metadata-Version: 2.1
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Name: kssdtree
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Version: 2.0.
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Version: 2.0.7
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Summary: Kssdtree is a versatile Python package for phylogenetic analysis. It also provides one-stop tree construction and visualization. It can handle DNA sequences of both fasta or fastq format, whether gzipped or not.
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Home-page: https://github.com/yhlink/kssdtree
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Download-URL: https://pypi.org/project/kssdtree
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setup(
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name='kssdtree',
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version='2.0.
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version='2.0.7',
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author='Hang Yang',
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author_email='yhlink1207@gmail.com',
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description="Kssdtree is a versatile Python package for phylogenetic analysis. It also provides one-stop tree construction and visualization. It can handle DNA sequences of both fasta or fastq format, whether gzipped or not. ",
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with open(taxonomy_path, 'r') as file:
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for line in file:
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columns = line.split()
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column_1 = columns[0]
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column_2 = columns[1:]
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tempfile = ''
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