kssdtree 1.1.3__tar.gz → 1.1.6__tar.gz

{kssdtree-1.1.3/kssdtree.egg-info → kssdtree-1.1.6}/PKG-INFO

@@ -1,11 +1,8 @@
-Metadata-Version: 1.1
+Metadata-Version: 2.1
 Name: kssdtree
-Version: 1.1.3
+Version: 1.1.6
 Summary: Kssdtree is a versatile Python package for phylogenetic analysis. It also provides one-stop tree construction and visualization. It can handle DNA sequences of both fasta or fastq format, whether gzipped or not. 
 Home-page: https://github.com/yhlink/kssdtree
+Download-URL: https://pypi.org/project/kssdtree
 Author: Hang Yang
 Author-email: yhlink1207@gmail.com
-License: UNKNOWN
-Download-URL: https://pypi.org/project/kssdtree
-Description: UNKNOWN
-Platform: UNKNOWN

kssdtree-1.1.6/README.md

@@ -0,0 +1,12 @@
+# Kssdree: an interactive Python package for phylogenetic analysis based on sketching technique
+
+Kssdtree is a versatile Python package for phylogenetic analysis, including three different pipelines: routine pipeline, reference subtraction pipeline and phylogenetic placement pipeline. The routine pipeline serves as a versatile tool for general-purpose phylogenetic analysis of users' genomic data.  The reference subtraction pipeline designs for population-level phylogenetic analysis. The phylogenetic placement pipeline facilitates the search for similar genomes in the Genome Taxonomy Database (GTDB). It conducts phylogenetic analysis alongside these similar genomes and positions the input genomes within the entire prokaryotic tree of life. 
+
+It also provides one-stop tree construction and visualization. It can handle DNA sequences of both fasta or fastq format, whether gzipped or not. Kssdtree can run on multiple platforms (Linux, Windows, and MacOS) with Jupyter notebooks.
+
+More usages about Kssdtree, please see Kssdtree documentation (https://kssdtree.readthedocs.io/en/latest).
+ 
+
+
+
+

{kssdtree-1.1.3 → kssdtree-1.1.6}/bytescale.c

@@ -1,22 +1,22 @@
-/* Philip T.L.C. Clausen Jan 2017 plan@dtu.dk */
-
-/*
- * Copyright (c) 2017, Philip Clausen, Technical University of Denmark
- * All rights reserved.
- * 
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- * 
- *		http://www.apache.org/licenses/LICENSE-2.0
- * 
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
-*/
-
-#include "dnjheaders/bytescale.h"
-
-double ByteScale = 1e0;
+/* Philip T.L.C. Clausen Jan 2017 plan@dtu.dk */
+
+/*
+ * Copyright (c) 2017, Philip Clausen, Technical University of Denmark
+ * All rights reserved.
+ * 
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ * 
+ *		http://www.apache.org/licenses/LICENSE-2.0
+ * 
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+*/
+
+#include "dnjheaders/bytescale.h"
+
+double ByteScale = 1e0;