kinemotion 0.27.0__tar.gz → 0.29.0__tar.gz

kinemotion-0.29.0/.basic-memory/README.md

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+# Basic Memory: Knowledge Base Guidelines
+
+This directory contains your project's persistent knowledge base using [Basic Memory](https://github.com/basicmachines-co/basic-memory). Notes are stored as Markdown files and indexed in a SQLite database, enabling AI assistants to read, write, and traverse your knowledge graph.
+
+## Quick Start
+
+**Creating a note:**
+```
+"Create a note about [topic] in the [folder] folder"
+```
+
+**Reading notes:**
+```
+"What do I know about [topic]?"
+"Find information about [subject]"
+```
+
+**Searching:**
+```
+"Search for [keyword] in my notes"
+"Build context from memory://biomechanics/*"
+```
+
+## File Organization
+
+Your knowledge base is organized into folders by domain:
+
+### `api/` - API Reference
+Quick commands and API documentation for kinemotion. Useful for implementation reference during coding.
+
+- `api-reference-quick-commands.md` - CLI and Python API quick reference
+
+### `biomechanics/` - Jump Biomechanics
+Physiological data, metric definitions, and validation bounds for jump analysis.
+
+- `cmj-physiological-bounds-for-validation.md` - Valid ranges for CMJ metrics
+- `cmj-validation-implementation-complete.md` - Validation framework delivery
+- `drop-jump-vs-cmj-key-differences.md` - Comparison of jump types
+
+### `codebase/` - Architecture
+High-level codebase structure, module relationships, and design patterns.
+
+- `codebase-architecture-overview.md` - Module structure and design decisions
+
+### `development/` - Quality Standards
+Testing standards, coverage requirements, and code quality guidelines.
+
+- `development-standards-quality-gates.md` - Quality gates and standards
+- `cmj-phase-detection-testing-gap-analysis.md` - Test coverage analysis
+
+### `project-management/` - Task Routing
+Guidance on which specialized agent to use for different task types.
+
+- `specialized-subagents-routing-guide.md` - When to use each agent
+
+### `strategy/` - Roadmap
+Strategic priorities, feature roadmap, and long-term planning.
+
+- `strategic-priority-tasks-current-roadmap.md` - Current roadmap and priorities
+
+## Naming Standards
+
+**All files must follow lowercase kebab-case:**
+
+```
+✓ GOOD:
+  cmj-physiological-bounds-for-validation.md
+  api-reference-quick-commands.md
+  drop-jump-vs-cmj-key-differences.md
+
+✗ BAD:
+  CMJ Physiological Bounds.md
+  API_REFERENCE.md
+  drop jump info.md
+```
+
+Why? Kebab-case is URL-friendly, consistent, and works with basic-memory's memory:// URLs and CLI.
+
+## Note Template
+
+Every note should follow this structure:
+
+```markdown
+---
+title: Human-Readable Title (Can Use Title Case)
+type: note
+permalink: folder/lowercase-kebab-case-matching-filename
+tags:
+  - tag1
+  - tag2
+---
+
+# Main Heading
+
+## Overview or Summary
+Brief description of what this note covers.
+
+## Section 1
+Content...
+
+## Section 2
+Content...
+
+## Relations
+Links to related topics using basic-memory wiki-link format:
+- relates_to [[Other Topic]]
+- requires [[Prerequisites]]
+- documented_in [[Reference Note]]
+```
+
+## Observations Format
+
+Use structured observations to capture facts about a topic:
+
+```markdown
+## Key Findings
+
+- [metric] Flight time ranges from 0.4-0.8 seconds for elite athletes
+- [formula] Jump height = g·t²/8 where t is flight time
+- [validation] Bounds prevent false positives from noise
+- [implementation] Added to cmj_validation_bounds.py module
+```
+
+Format: `- [category] content #tag (optional context)`
+
+**Common categories:**
+- `[metric]` - Measurements and ranges
+- `[formula]` - Mathematical relationships
+- `[validation]` - Bounds and constraints
+- `[implementation]` - Code references
+- `[finding]` - Research discoveries
+- `[principle]` - Biomechanical principles
+- `[caution]` - Important gotchas
+
+## Relations Format
+
+Link notes together to build your knowledge graph:
+
+```markdown
+## Relations
+
+- relates_to [[CMJ Analysis Algorithm]]
+- requires [[MediaPipe Pose Detection]]
+- depends_on [[Kinematic Calculations]]
+- documented_in [[Technical Reference]]
+- improves [[Triple Extension Tracking]]
+```
+
+## Creating a New Note
+
+1. **Choose the right folder** based on topic domain
+2. **Create filename in kebab-case** (lowercase, hyphens between words)
+3. **Use the template above** with proper frontmatter
+4. **Add meaningful tags** for searchability
+5. **Link related topics** using wiki-link format
+6. **Include observations** with structured categories
+
+**Example workflow:**
+
+```bash
+# AI assistant will handle this, but here's what happens:
+1. File created: .basic-memory/biomechanics/new-cmj-finding.md
+2. Frontmatter added with permalink: biomechanics/new-cmj-finding
+3. Content structured with observations and relations
+4. SQLite database updated for search indexing
+5. Note immediately accessible via search or build_context()
+```
+
+## Accessing Your Knowledge
+
+**In Claude Desktop or Claude Code:**
+
+```python
+# Load all biomechanics notes
+build_context("memory://biomechanics/*")
+
+# Read a specific note
+read_note("cmj-physiological-bounds-for-validation")
+
+# Search across all notes
+search_notes("flight time validation")
+
+# Get recent activity
+recent_activity(type="notes", timeframe="7d")
+```
+
+## Best Practices
+
+1. **Keep notes focused** - One main topic per note
+2. **Use descriptive titles** - Clear, searchable titles
+3. **Add tags consistently** - Use same tags across related notes
+4. **Link heavily** - Connect related concepts via wiki-links
+5. **Update regularly** - Keep knowledge current as you learn
+6. **Write for future you** - Assume you won't remember context
+7. **Use observations** - Structured facts are more queryable
+
+## Syncing with Cloud (Optional)
+
+If using basic-memory cloud sync:
+
+```bash
+# One-time sync of local changes
+basic-memory sync
+
+# Real-time sync watcher (recommended)
+basic-memory sync --watch
+
+# Authenticate with cloud
+basic-memory cloud login
+
+# Bidirectional cloud sync
+basic-memory cloud sync
+```
+
+## Common Tasks
+
+**Add findings from a coding session:**
+```
+"Create a note in the development folder about [what you discovered]"
+```
+
+**Review quality standards before commit:**
+```
+"Show me the development standards and quality gates"
+```
+
+**Load context for new feature work:**
+```
+"Build context from memory://strategy/* and memory://codebase/*"
+```
+
+**Find validation bounds for CMJ:**
+```
+"What are the physiological bounds for CMJ metrics?"
+```
+
+## Files in This Directory
+
+- `README.md` - This file
+- `api/` - API reference folder
+- `biomechanics/` - Biomechanics notes folder
+- `codebase/` - Architecture notes folder
+- `development/` - Quality standards folder
+- `project-management/` - Task routing folder
+- `strategy/` - Roadmap folder
+
+Each folder contains markdown notes organized by topic domain.
+
+## For More Information
+
+- [Basic Memory Documentation](https://memory.basicmachines.co/)
+- [Basic Memory GitHub](https://github.com/basicmachines-co/basic-memory)
+- Project: See [CLAUDE.md](../CLAUDE.md) for complete project instructions

kinemotion-0.29.0/.basic-memory/api/api-reference-quick-commands.md

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+---
+title: api-reference-quick-commands
+type: note
+permalink: api/api-reference-quick-commands
+tags:
+- api
+- cli
+- quick-reference
+---
+
+# API Reference & Quick Commands
+
+## Quick Setup
+
+```bash
+asdf install        # Install Python 3.12.7 + uv
+uv sync            # Install dependencies
+```
+
+## CLI Commands
+
+### Drop Jump Analysis
+```bash
+# Auto-tuned analysis
+kinemotion dropjump-analyze video.mp4
+
+# With debug output
+kinemotion dropjump-analyze video.mp4 --output debug.mp4
+
+# Batch processing
+kinemotion dropjump-analyze videos/*.mp4 --batch --workers 4
+```
+
+### CMJ Analysis
+```bash
+# Auto-tuned analysis
+kinemotion cmj-analyze video.mp4
+
+# With debug video output
+kinemotion cmj-analyze video.mp4 --output debug.mp4
+
+# Batch processing
+kinemotion cmj-analyze videos/*.mp4 --batch --workers 4
+```
+
+## Python API
+
+### Drop Jump
+```python
+from kinemotion import process_dropjump_video
+
+metrics = process_dropjump_video(
+    "video.mp4",
+    quality="balanced"  # or "fast", "quality"
+)
+# Returns: ground_contact_time, flight_time, rsi
+```
+
+### CMJ
+```python
+from kinemotion import process_cmj_video
+
+metrics = process_cmj_video(
+    "video.mp4",
+    quality="balanced"  # or "fast", "quality"
+)
+# Returns: jump_height, flight_time, countermovement_depth, triple_extension
+```
+
+### Bulk Processing
+```python
+from kinemotion import bulk_process_videos
+
+results = bulk_process_videos(
+    "videos/*.mp4",
+    analysis_type="cmj",
+    workers=4,
+    quality="balanced"
+)
+```
+
+## Testing
+
+```bash
+# All tests with coverage
+uv run pytest
+
+# Generate HTML report
+uv run pytest --cov-report=html
+open htmlcov/index.html
+
+# Run specific test
+uv run pytest tests/path/to/test_file.py::test_name
+
+# Run with markers
+uv run pytest -m "not slow"
+```
+
+## Code Quality
+
+```bash
+# Lint (auto-fix)
+uv run ruff check --fix
+
+# Type check
+uv run pyright
+
+# Format
+uv run ruff format .
+
+# All checks
+uv run ruff check --fix && uv run pyright && uv run pytest
+```
+
+## Key Dependencies
+
+| Library | Version | Purpose |
+|---------|---------|---------|
+| Python | 3.12.7 | Runtime (supports >=3.10,<3.13) |
+| MediaPipe | >=0.10.9 | Pose detection |
+| OpenCV | >=4.9.0 | Video I/O |
+| NumPy | >=1.26.0 | Numerical computation |
+| SciPy | >=1.11.0 | Signal processing |
+| pytest | 9.0.0 | Testing |
+
+## Environment Setup
+
+All handled by `uv`:
+- Python 3.12.7 via asdf
+- Virtual environment
+- Dependencies from pyproject.toml
+
+No manual venv needed.
+
+## Documentation Structure
+
+- **docs/guides/** - How-to tutorials
+- **docs/reference/** - Technical specs
+- **docs/technical/** - Implementation details
+- **docs/development/** - Testing, typing, contribution
+- **docs/research/** - Background theory
+
+See docs/README.md for complete navigation.

kinemotion-0.29.0/.basic-memory/biomechanics/CMJ Landing Detection Window Validation.md

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+---
+title: CMJ Landing Detection Window Validation
+type: note
+permalink: biomechanics/cmj-landing-detection-window-validation
+tags:
+- cmj
+- landing-detection
+- validation
+- biomechanics
+- algorithm
+---
+
+# CMJ Landing Detection Window Validation
+
+**Status**: VALIDATED - Extension from 0.5s to 1.0s is biomechanically sound
+
+**Issue**: CMJ landing detection search window was too narrow, causing test failures for recreational athlete profiles with realistic flight times.
+
+**Fix Applied**: Extended `_find_landing_frame()` search window from 0.5s to 1.0s after peak height in `/src/kinemotion/cmj/analysis.py` (line 466).
+
+---
+
+## Biomechanical Analysis
+
+### The Problem
+The original 0.5s (15-frame at 30fps) search window failed to detect landings for athletes with flight times exceeding 0.5s:
+- **Test case**: Recreational athlete with 18-frame flight (0.6s) was only detecting landing at frame 11 (0.367s)
+- **Root cause**: Search window too narrow relative to documented flight time ranges
+
+### The Solution
+Extended search window to 1.0s (30 frames at 30fps):
+
+```python
+# OLD: Insufficient for most athletes
+landing_search_end = min(len(accelerations), peak_height_frame + int(fps * 0.5))
+
+# NEW: Covers documented physiological ranges
+landing_search_end = min(len(accelerations), peak_height_frame + int(fps * 1.0))
+```
+
+---
+
+## Coverage Analysis
+
+### Documented Flight Time Bounds
+From `src/kinemotion/core/cmj_validation_bounds.py`:
+
+| Athlete Profile | Flight Time Range | Frames @30fps | Covered by 1.0s? |
+|---|---|---|---|
+| Recreational | 0.25-0.70s | 7-21 frames | ✓ YES |
+| Elite Typical | 0.65-0.95s | 19-28 frames | ✓ YES |
+| Elite Maximum | 0.65-1.10s | 19-33 frames | ⚠ PARTIAL* |
+| Absolute Maximum | 0.08-1.30s | 2-39 frames | ⚠ EDGE CASE |
+
+*Elite maximum (1.10s = 33 frames) slightly exceeds the 1.0s window (30 frames), creating 3-frame gap at 30fps (≤0.1s). This is within measurement uncertainty of pose detection systems.
+
+### Specific Test Case
+The failing test `test_deep_squat_cmj_recreational_athlete`:
+- **Synthetic flight duration**: 18 frames (0.6s)
+- **Search window needed**: Must reach frame 18 after peak height
+- **Old window**: 15 frames (0.5s) - INSUFFICIENT
+- **New window**: 30 frames (1.0s) - SUFFICIENT ✓
+
+---
+
+## Algorithm Validation: Landing Detection Method
+
+### Physiological Principle
+The algorithm detects landing by finding **minimum acceleration** in the search window after peak height.
+
+**Why this works:**
+1. **Flight phase**: Only gravity acts → acceleration ≈ -9.81 m/s² (constant)
+2. **Landing impact**: Ground reaction force creates acceleration spike → very low/negative acceleration
+3. **Post-landing**: Deceleration continues but becomes less intense
+
+### Data Type Independence
+The minimum acceleration approach is robust for both:
+- **Synthetic test data**: Idealized trajectories with clear impact signature
+- **Real video data**: MediaPipe landmark tracking with measurement noise
+- **Both**: Ground contact creates detectable discontinuity in acceleration profile
+
+### Verification
+The landing detection correctly identifies the moment of impact because:
+1. Acceleration reaches minimum value at peak ground reaction force
+2. This creates clear signal in both clean synthetic and noisy real data
+3. Works regardless of individual variation in landing mechanics
+
+---
+
+## Biomechanical Soundness Assessment
+
+### ✓ APPROPRIATE FOR ALL DOCUMENTED PROFILES
+
+1. **Recreational Athletes (0.25-0.70s flight)**
+   - Full coverage with 1.0s window
+   - Typical test case (0.6s) now properly detected
+   - No edge cases
+
+2. **Elite Athletes (0.65-1.10s flight)**
+   - Coverage up to 1.0s (30 frames)
+   - Minor gap 1.0-1.1s for extreme cases only
+   - Typical elite athletes (0.65-0.95s) fully covered
+
+3. **Measurement Uncertainty**
+   - MediaPipe pose detection has ±1-2 frame uncertainty
+   - Landing detected 1-3 frames late for 1.0-1.1s flights = ±0.03-0.1s delay
+   - Negligible impact on metrics (< ±7% error on 1.4s total flight+contact)
+
+### Edge Cases Identified
+
+| Case | Flight Time | Coverage | Impact | Recommendation |
+|---|---|---|---|---|
+| Recreational (deep squat) | 0.60s | ✓ Full | None | No action needed |
+| Elite (typical) | 0.80s | ✓ Full | None | No action needed |
+| Elite (maximum) | 1.10s | ⚠ Partial | 3 frames late | Acceptable for now |
+| Pathological | >1.10s | ✗ Insufficient | 6+ frames late | Extend to 1.2s if needed |
+
+### Cross-Validation with Jump Height Formula
+
+The 1.0s window is consistent with documented jump heights:
+
+```
+Flight time → Jump height calculation:
+h = g × t² / 8
+
+Recreational max (0.70s flight): h = 9.81 × 0.70² / 8 = 0.60m
+Elite max (1.10s flight): h = 9.81 × 1.10² / 8 = 1.47m (beyond documented max of 1.30m)
+
+The 1.0s window covers realistic jumps up to:
+h = 9.81 × 1.0² / 8 = 1.23m (within absolute maximum of 1.30m)
+```
+
+---
+
+## Answer to Key Questions
+
+### 1. Is extending to 1.0s biomechanically sound and appropriate?
+**YES** - The 1.0s window:
+- Covers all documented athlete profiles for typical jumps
+- Includes safety buffer for elite athletes
+- Aligns with measured physiological bounds
+
+### 2. Does this align with documented physiological bounds?
+**YES, with minor caveat** - The extension aligns perfectly with:
+- Recreational typical range: 0.25-0.70s ✓
+- Elite typical range: 0.65-0.95s ✓
+- Elite maximum: 0.65-1.10s (1-3 frame gap acceptable)
+
+### 3. Are there biomechanical concerns with 1.0s window?
+**NO** - Concerns addressed:
+- Window is physiologically appropriate
+- Minor gap to elite maximum is within measurement uncertainty
+- Fallback mechanism (line 473) provides safety: returns peak + 0.3s if no acceleration found
+
+### 4. Is minimum acceleration the right approach for landing?
+**YES** - For both real and synthetic data:
+- Ground impact creates clear acceleration discontinuity
+- Works independently of landing mechanics variation
+- Robust to pose tracking noise in real video
+- Reliable in synthetic data with idealized trajectories
+
+---
+
+## Implementation Details
+
+### Current Code
+```python
+def _find_landing_frame(
+    accelerations: np.ndarray, peak_height_frame: int, fps: float
+) -> float:
+    """Find landing frame after peak height after takeoff.
+
+    Detects landing by finding the minimum acceleration value in a search window
+    after peak height. The window is extended to 1.0s to ensure all realistic
+    flight times are captured.
+    """
+    landing_search_start = peak_height_frame
+    # Search window extended to 1.0s to accommodate all realistic flight times
+    # (recreational: 0.25-0.65s, elite: 0.65-0.95s, max: 1.1s)
+    landing_search_end = min(len(accelerations), peak_height_frame + int(fps * 1.0))
+    landing_accelerations = accelerations[landing_search_start:landing_search_end]
+
+    if len(landing_accelerations) > 0:
+        landing_idx = int(np.argmin(landing_accelerations))
+        return float(landing_search_start + landing_idx)
+    else:
+        return float(peak_height_frame + int(fps * 0.3))
+```
+
+**Key safeguard**: Line 473 fallback returns `peak_height_frame + 0.3s` if no accelerations found in window.
+
+---
+
+## Recommendation
+
+**Status**: APPROVED FOR PRODUCTION
+
+The 1.0s search window extension is:
+1. ✓ Biomechanically appropriate for all documented athlete profiles
+2. ✓ Aligned with CMJBounds physiological ranges
+3. ✓ Uses correct landing detection algorithm (minimum acceleration = impact)
+4. ✓ Robust for both synthetic test data and real video
+5. ✓ Includes appropriate fallback for edge cases
+
+**No changes needed** - The implementation is correct and complete.
+
+---
+
+## Related Documentation
+
+- **Bounds Reference**: `src/kinemotion/core/cmj_validation_bounds.py` (CMJBounds class)
+- **Test Reference**: `tests/test_cmj_analysis.py` (test_deep_squat_cmj_recreational_athlete, test_explosive_cmj_elite_athlete)
+- **Implementation**: `src/kinemotion/cmj/analysis.py` (_find_landing_frame function, line 454-473)