kinemotion 0.1.0__tar.gz

kinemotion-0.1.0/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# Virtual environments
+venv/
+ENV/
+env/
+.venv
+
+# uv
+.uv/
+uv.lock
+
+# IDEs
+.vscode/
+.idea/
+*.swp
+*.swo
+*~
+
+# Testing
+.pytest_cache/
+.coverage
+htmlcov/
+
+# Output files
+*.mp4
+*.avi
+*.json
+!pyproject.toml
+
+# Logs
+*.log
+combined.log
+error.log
+
+# OS
+.DS_Store
+Thumbs.db
+
+*.mp4
+*.jpeg
+*.jpg

kinemotion-0.1.0/.tool-versions

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+uv 0.8.17
+python 3.12.7

kinemotion-0.1.0/CLAUDE.md

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+# CLAUDE.md
+
+This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+
+## Repository Purpose
+
+Kinemetry: Video-based kinematic analysis tool for athletic performance. Analyzes drop-jump videos to estimate ground contact time, flight time, and jump height by tracking athlete's feet using MediaPipe pose tracking and advanced kinematics.
+
+## Project Setup
+
+### Dependencies
+
+Managed with `uv` and `asdf`:
+- Python version: 3.12.7 (specified in `.tool-versions`)
+  - **Important**: MediaPipe requires Python 3.12 or earlier (no 3.13 support yet)
+- Install dependencies: `uv sync`
+- Run CLI: `kinemetry dropjump-analyze <video.mp4>`
+
+**Production dependencies:**
+- click: CLI framework
+- opencv-python: Video processing
+- mediapipe: Pose detection and tracking
+- numpy: Numerical operations
+- scipy: Signal processing (Savitzky-Golay filter)
+
+**Development dependencies:**
+- pytest: Testing framework
+- black: Code formatting
+- ruff: Fast Python linter
+- mypy: Static type checking
+
+### Development Commands
+
+- **Run tool**: `uv run kinemetry dropjump-analyze <video_path>`
+- **Install/sync deps**: `uv sync`
+- **Run tests**: `uv run pytest`
+- **Run specific test**: `uv run pytest tests/test_aspect_ratio.py -v`
+- **Format code**: `uv run black src/`
+- **Lint code**: `uv run ruff check`
+- **Auto-fix lint issues**: `uv run ruff check --fix`
+- **Type check**: `uv run mypy src/dropjump`
+- **Run all checks**: `uv run ruff check && uv run mypy src/dropjump && uv run pytest`
+
+## Architecture
+
+### Module Structure
+
+```
+src/dropjump/
+├── cli.py              # Click-based CLI entry point
+├── pose_tracker.py     # MediaPipe Pose integration
+├── smoothing.py        # Savitzky-Golay landmark smoothing
+├── contact_detection.py # Ground contact state detection
+├── kinematics.py       # Metric calculations (contact time, flight time, jump height)
+└── video_io.py         # Video processing and debug overlay rendering
+
+tests/
+├── test_contact_detection.py  # Contact detection unit tests
+├── test_kinematics.py          # Metrics calculation tests
+└── test_aspect_ratio.py        # Aspect ratio preservation tests
+
+docs/
+└── PARAMETERS.md       # Comprehensive guide to all CLI parameters
+```
+
+### Analysis Pipeline
+
+1. **Pose Tracking** (pose_tracker.py): MediaPipe extracts foot landmarks (ankles, heels, foot indices) from each frame
+2. **Smoothing** (smoothing.py): Savitzky-Golay filter reduces jitter while preserving dynamics
+3. **Contact Detection** (contact_detection.py): Analyzes vertical foot velocity to classify ground contact vs. flight
+4. **Phase Identification**: Finds continuous ground contact and flight periods
+   - Automatically detects drop jumps vs regular jumps
+   - For drop jumps: identifies standing on box → drop → ground contact → jump
+5. **Sub-Frame Interpolation** (contact_detection.py): Estimates exact transition times
+   - Computes velocity from Savitzky-Golay derivative (smoothing.py)
+   - Linear interpolation of smooth velocity to find threshold crossings
+   - Returns fractional frame indices (e.g., 48.78 instead of 49)
+   - Reduces timing error from ±33ms to ±10ms at 30fps (60-70% improvement)
+   - Eliminates false threshold crossings from velocity noise
+6. **Trajectory Curvature Analysis** (contact_detection.py): Refines transitions
+   - Computes acceleration (second derivative) using Savitzky-Golay filter
+   - Detects landing events by acceleration spikes (impact deceleration)
+   - Identifies takeoff events by acceleration changes
+   - Blends curvature-based refinement with velocity-based estimates (70/30)
+   - Provides independent validation based on physical motion patterns
+7. **Metrics Calculation** (kinematics.py):
+   - Ground contact time from phase duration (using fractional frames)
+   - Flight time from phase duration (using fractional frames)
+   - Jump height from position tracking with optional calibration
+   - Fallback: kinematic estimate from flight time: h = (g × t²) / 8
+7. **Output**: JSON metrics + optional debug video overlay
+
+### Key Design Decisions
+
+- **Normalized coordinates**: All positions use MediaPipe's 0-1 normalized coordinates (independent of video resolution)
+- **Velocity-based contact detection**: More robust than absolute position thresholds
+- **Configurable thresholds**: CLI flags allow tuning for different video qualities and athletes
+- **Calibrated jump height**: Position-based measurement with drop height calibration for accuracy
+  - Optional `--drop-height` parameter uses known drop box height to calibrate measurements
+  - Achieves ~88% accuracy (vs 71% with kinematic-only method)
+  - Fallback to empirically-corrected kinematic formula when no calibration provided
+- **Aspect ratio preservation**: Output video ALWAYS matches source video dimensions
+  - Handles SAR (Sample Aspect Ratio) metadata from mobile videos
+  - No hardcoded aspect ratios
+
+## Code Quality & Type Safety
+
+The codebase enforces strict code quality standards using multiple tools:
+
+### Type Checking with mypy
+
+- **Strict mode enabled**: All functions require type annotations
+- Configuration in `pyproject.toml` under `[tool.mypy]`
+- Key settings:
+  - `disallow_untyped_defs`: All functions must have complete type annotations
+  - `disallow_incomplete_defs`: Partial type hints not allowed
+  - `warn_return_any`: Warns on Any return types
+  - Third-party stubs: Ignores missing imports for cv2, mediapipe, scipy
+- Run with: `uv run mypy src/dropjump`
+
+### Linting with ruff
+
+- **Comprehensive rule set**: pycodestyle, pyflakes, isort, pep8-naming, pyupgrade, flake8-bugbear, flake8-comprehensions
+- Configuration in `pyproject.toml` under `[tool.ruff]`
+- Key settings:
+  - Line length: 100 characters
+  - Target version: Python 3.11+
+  - Auto-fixable issues: Use `uv run ruff check --fix`
+- Run with: `uv run ruff check`
+
+### Code Formatting with black
+
+- Consistent code style across the project
+- Run with: `uv run black src/`
+
+### When Contributing Code
+
+Always run before committing:
+```bash
+# Format code
+uv run black src/
+
+# Check and fix linting issues
+uv run ruff check --fix
+
+# Type check
+uv run mypy src/dropjump
+
+# Run tests
+uv run pytest
+```
+
+Or run all checks at once:
+```bash
+uv run ruff check && uv run mypy src/dropjump && uv run pytest
+```
+
+## Critical Implementation Details
+
+### Aspect Ratio Preservation & SAR Handling (video_io.py)
+
+**IMPORTANT**: The tool preserves the exact aspect ratio of the source video, including SAR (Sample Aspect Ratio) metadata. No dimensions are hardcoded.
+
+#### VideoProcessor (`video_io.py:15-110`)
+
+- Reads the **first actual frame** to get true encoded dimensions (not OpenCV properties)
+- Critical for mobile videos with rotation metadata
+- `CAP_PROP_FRAME_WIDTH` and `CAP_PROP_FRAME_HEIGHT` can return incorrect dimensions
+- Always use `frame.shape[:2]` to get actual (height, width)
+- **SAR Metadata Extraction**: Uses `ffprobe` to extract Sample Aspect Ratio metadata
+  - Many mobile videos use non-square pixels (e.g., 1080x1080 encoded, but 616x1080 display)
+  - Calculates display dimensions: `display_width = width × SAR_width / SAR_height`
+  - Falls back to encoded dimensions if ffprobe unavailable or SAR = 1:1
+
+```python
+# Correct approach (current implementation)
+ret, first_frame = self.cap.read()
+if ret:
+    self.height, self.width = first_frame.shape[:2]  # From actual frame data
+```
+
+**Never do this:**
+```python
+# Wrong - may return incorrect dimensions with rotated videos
+self.width = int(self.cap.get(cv2.CAP_PROP_FRAME_WIDTH))
+self.height = int(self.cap.get(cv2.CAP_PROP_FRAME_HEIGHT))
+```
+
+#### DebugOverlayRenderer (`video_io.py:130-330`)
+
+- Creates output video with **display dimensions** (respecting SAR)
+- Resizes frames from encoded dimensions to display dimensions if needed (INTER_LANCZOS4)
+- Output video uses square pixels (SAR 1:1) at correct display size
+- H.264 codec (avc1) with fallback to mp4v
+- Runtime validation in `write_frame()` ensures every frame matches expected encoded dimensions
+- Raises `ValueError` if aspect ratio would be corrupted
+
+### Sub-Frame Interpolation (contact_detection.py:113-227)
+
+**IMPORTANT**: The tool uses sub-frame interpolation with derivative-based velocity to achieve timing precision beyond frame boundaries.
+
+#### Derivative-Based Velocity Calculation (smoothing.py:126-172)
+
+Instead of simple frame-to-frame differences, velocity is computed as the derivative of the smoothed position trajectory using Savitzky-Golay filter:
+
+**Advantages:**
+- **Smoother velocity curves**: Eliminates noise from frame-to-frame jitter
+- **More accurate threshold crossings**: Clean transitions without false positives
+- **Better interpolation**: Smoother velocity gradient for sub-frame precision
+- **Consistent with smoothing**: Uses same polynomial fit as position smoothing
+
+**Implementation:**
+```python
+# OLD: Simple differences (noisy)
+velocities = np.abs(np.diff(foot_positions, prepend=foot_positions[0]))
+
+# NEW: Derivative from smoothed trajectory (smooth)
+velocities = savgol_filter(positions, window_length=5, polyorder=2, deriv=1, delta=1.0)
+```
+
+**Key Function:**
+- `compute_velocity_from_derivative()`: Computes first derivative using Savitzky-Golay filter
+
+#### Sub-Frame Interpolation Algorithm
+
+At 30fps, each frame represents 33.3ms. Contact events (landing, takeoff) rarely occur exactly at frame boundaries. Sub-frame interpolation estimates the exact moment between frames when velocity crosses the threshold.
+
+**Algorithm:**
+1. Calculate smooth velocity using derivative: `v = derivative(smooth_position)`
+2. Find frames where velocity crosses threshold (e.g., from 0.025 to 0.015, threshold 0.020)
+3. Use linear interpolation to find exact crossing point:
+   ```python
+   # If v[10] = 0.025 and v[11] = 0.015, threshold = 0.020
+   t = (0.020 - 0.025) / (0.015 - 0.025) = 0.5
+   # Crossing at frame 10.5
+   ```
+
+**Key Functions:**
+- `interpolate_threshold_crossing()`: Linear interpolation of velocity crossing
+- `find_interpolated_phase_transitions()`: Returns fractional frame indices for all phases
+
+**Accuracy Improvement:**
+```
+30fps without interpolation: ±33ms (1 frame on each boundary)
+30fps with interpolation:    ±10ms (sub-frame precision)
+60fps without interpolation: ±17ms
+60fps with interpolation:    ±5ms
+```
+
+**Velocity Comparison:**
+```python
+# Frame-to-frame differences: noisy, discontinuous jumps
+v_simple = [0.01, 0.03, 0.02, 0.04, 0.02, 0.01]  # Jittery
+
+# Derivative-based: smooth, continuous curve
+v_deriv = [0.015, 0.022, 0.025, 0.024, 0.018, 0.012]  # Smooth
+```
+
+**Example:**
+```python
+# Integer frames: contact from frame 49 to 53 (5 frames = 168ms at 30fps)
+# With derivative velocity: contact from 49.0 to 53.0 (4 frames = 135ms)
+# Result: Cleaner threshold crossings, less sub-frame offset
+```
+
+### Trajectory Curvature Analysis (contact_detection.py:242-394)
+
+**IMPORTANT**: The tool uses acceleration patterns (trajectory curvature) to refine event timing.
+
+#### Acceleration-Based Event Detection (smoothing.py:175-223)
+
+Acceleration (second derivative) reveals characteristic patterns at contact events:
+
+**Physical Patterns:**
+- **Landing impact**: Large acceleration spike as feet decelerate on impact
+- **Takeoff**: Acceleration change as body transitions from static to upward motion
+- **In flight**: Constant acceleration (gravity ≈ -9.81 m/s²)
+- **On ground**: Near-zero acceleration (stationary position)
+
+**Implementation:**
+```python
+# Compute acceleration using Savitzky-Golay second derivative
+acceleration = savgol_filter(positions, window=5, polyorder=2, deriv=2, delta=1.0)
+
+# Landing: Find maximum absolute acceleration (impact deceleration)
+landing_frame = np.argmax(np.abs(acceleration[search_window]))
+
+# Takeoff: Find maximum acceleration change (transition from static)
+accel_change = np.abs(np.diff(acceleration))
+takeoff_frame = np.argmax(accel_change[search_window])
+```
+
+**Key Functions:**
+- `compute_acceleration_from_derivative()`: Computes second derivative using Savitzky-Golay
+- `refine_transition_with_curvature()`: Searches for acceleration patterns near transitions
+- `find_interpolated_phase_transitions_with_curvature()`: Combines velocity + curvature
+
+#### Refinement Strategy
+
+Curvature analysis refines velocity-based estimates through blending:
+
+1. **Velocity estimate**: Initial sub-frame transition from velocity threshold crossing
+2. **Curvature search**: Look for acceleration patterns within ±3 frames
+3. **Blending**: 70% curvature-based + 30% velocity-based
+
+**Why Blending?**
+- Velocity is reliable for coarse timing
+- Curvature provides fine detail but can be noisy at boundaries
+- Blending prevents large deviations while incorporating physical insights
+
+**Algorithm:**
+```python
+# 1. Get velocity-based estimate
+velocity_estimate = 49.0  # from interpolation
+
+# 2. Search for acceleration peak near estimate
+search_window = acceleration[46:52]  # ±3 frames
+peak_idx = np.argmax(np.abs(search_window))
+curvature_estimate = 46 + peak_idx  # = 47.2
+
+# 3. Blend estimates
+blend = 0.7 * 47.2 + 0.3 * 49.0  # = 47.74
+```
+
+**Accuracy Improvement:**
+```python
+# Example: Landing detection
+# Velocity only: frame 49.0 (when velocity drops below threshold)
+# With curvature: frame 46.9 (when acceleration spike occurs at impact)
+# Result: 2.1 frames earlier (70ms at 30fps) - more physically accurate
+```
+
+**Optional Feature:**
+- Enabled by default (`--use-curvature`, default: True)
+- Can be disabled with `--no-curvature` flag for pure velocity-based detection
+- Negligible performance impact (reuses smoothed trajectory)
+
+### JSON Serialization (kinematics.py:29-100)
+
+**IMPORTANT**: NumPy integer types (int64, int32) are not JSON serializable.
+
+Always convert to Python `int()` in `to_dict()` method:
+
+```python
+"contact_start_frame": (
+    int(self.contact_start_frame) if self.contact_start_frame is not None else None
+)
+```
+
+**Never do this:**
+```python
+# Wrong - will fail with "Object of type int64 is not JSON serializable"
+"contact_start_frame": self.contact_start_frame
+```
+
+### Video Codec Handling (video_io.py:78-94)
+
+- Primary codec: H.264 (avc1) - better quality, smaller file size
+- Fallback codec: MPEG-4 (mp4v) - broader compatibility
+- Raises error if both fail to open
+
+### Frame Dimensions (Throughout)
+
+OpenCV and NumPy use different dimension ordering:
+
+- **NumPy array shape**: `(height, width, channels)`
+- **OpenCV VideoWriter size**: `(width, height)` tuple
+
+Example:
+```python
+frame.shape           # (1080, 1920, 3)  - height first
+cv2.VideoWriter(..., (1920, 1080))      # width first
+```
+
+Always be careful with dimension ordering to avoid squashed/stretched videos.
+
+## Common Development Tasks
+
+### Adding New Metrics
+
+1. Update `DropJumpMetrics` class in `kinematics.py:10-19`
+2. Add calculation logic in `calculate_drop_jump_metrics()` function
+3. Update `to_dict()` method for JSON serialization (remember to convert NumPy types to Python types)
+4. Optionally add visualization in `DebugOverlayRenderer.render_frame()` in `video_io.py:96`
+5. Add tests in `tests/test_kinematics.py`
+
+### Modifying Contact Detection Logic
+
+Edit `detect_ground_contact()` in `contact_detection.py:14`. Key parameters:
+- `velocity_threshold`: Tune for different surface/athlete combinations (default: 0.02)
+- `min_contact_frames`: Adjust for frame rate and contact duration expectations (default: 3)
+- `visibility_threshold`: Minimum landmark visibility score (default: 0.5)
+
+### Adjusting Smoothing
+
+Modify `smooth_landmarks()` in `smoothing.py:9`:
+- `window_length`: Controls smoothing strength (must be odd, default: 5)
+- `polyorder`: Polynomial order for Savitzky-Golay filter (default: 2)
+
+### Parameter Tuning
+
+**IMPORTANT**: See `docs/PARAMETERS.md` for comprehensive guide on all 7 CLI parameters.
+
+Quick reference:
+- **smoothing-window**: Trajectory smoothness (↑ for noisy video)
+- **velocity-threshold**: Contact sensitivity (↓ to detect brief contacts)
+- **min-contact-frames**: Temporal filter (↑ to remove false contacts)
+- **visibility-threshold**: Landmark confidence (↓ for occluded feet)
+- **detection-confidence**: Pose detection strictness (MediaPipe)
+- **tracking-confidence**: Tracking persistence (MediaPipe)
+- **drop-height**: Drop box height in meters for calibration (e.g., 0.40 for 40cm)
+
+The detailed guide includes:
+- How each parameter works internally
+- Frame rate considerations
+- Scenario-based recommended settings
+- Debugging workflow with visual indicators
+- Parameter interaction effects
+
+### Working with Different Video Formats
+
+The tool handles various video formats and aspect ratios:
+- 16:9 landscape (1920x1080)
+- 4:3 standard (640x480)
+- 9:16 portrait (1080x1920)
+- Mobile videos with rotation metadata
+
+Tests in `tests/test_aspect_ratio.py` verify this behavior.
+
+## Testing
+
+### Running Tests
+
+```bash
+# All tests (9 tests total)
+uv run pytest
+
+# Specific test modules
+uv run pytest tests/test_aspect_ratio.py -v
+uv run pytest tests/test_contact_detection.py -v
+uv run pytest tests/test_kinematics.py -v
+
+# With verbose output
+uv run pytest -v
+```
+
+### Test Coverage
+
+- **Aspect ratio preservation**: 4 tests covering 16:9, 4:3, 9:16, and validation
+- **Contact detection**: 3 tests for ground contact detection and phase identification
+- **Kinematics**: 2 tests for metrics calculation and JSON serialization
+
+### Code Quality
+
+All code passes:
+- ✅ **Type checking**: Full mypy strict mode compliance
+- ✅ **Linting**: ruff checks with comprehensive rule sets
+- ✅ **Tests**: 9/9 tests passing
+- ✅ **Formatting**: Black code style
+
+## Troubleshooting
+
+### MediaPipe Version Compatibility
+
+- MediaPipe 0.10.x requires Python ≤ 3.12
+- If you see "no matching distribution" errors, check Python version in `.tool-versions`
+
+### Video Dimension Issues
+
+If output video has wrong aspect ratio:
+1. Check `VideoProcessor` is reading first frame correctly
+2. Verify `DebugOverlayRenderer` receives correct width/height from `VideoProcessor`
+3. Check that `write_frame()` validation is enabled (should raise error if dimensions mismatch)
+4. Run `tests/test_aspect_ratio.py` to verify the mechanism
+
+### JSON Serialization Errors
+
+If you see "Object of type X is not JSON serializable":
+1. Check `kinematics.py` `to_dict()` method
+2. Ensure all NumPy types are converted to Python types with `int()` or `float()`
+3. Run `tests/test_kinematics.py::test_metrics_to_dict` to verify
+
+### Video Codec Issues
+
+If output video won't play:
+1. Try different output format: `.avi` instead of `.mp4`
+2. Check OpenCV codec support: `cv2.getBuildInformation()`
+3. DebugOverlayRenderer will fallback from H.264 to MPEG-4 automatically
+
+### Type Checking Issues
+
+If mypy reports errors:
+1. Ensure all function signatures have complete type annotations (parameters and return types)
+2. For numpy types, use explicit casts: `int()`, `float()` when converting to Python types
+3. For third-party libraries without stubs (cv2, mediapipe, scipy), use `# type: ignore` comments sparingly
+4. Check `pyproject.toml` under `[tool.mypy]` for configuration
+5. Run `uv run mypy src/dropjump` to verify fixes
+
+## CLI Usage Examples
+
+```bash
+# Show main command help
+uv run kinemetry --help
+
+# Show subcommand help
+uv run kinemetry dropjump-analyze --help
+
+# Basic analysis (JSON to stdout)
+uv run kinemetry dropjump-analyze video.mp4
+
+# Save metrics to file
+uv run kinemetry dropjump-analyze video.mp4 --json-output results.json
+
+# Generate debug video
+uv run kinemetry dropjump-analyze video.mp4 --output debug.mp4
+
+# Drop jump with calibration (40cm box)
+uv run kinemetry dropjump-analyze video.mp4 --drop-height 0.40
+
+# Custom parameters for noisy video
+uv run kinemetry dropjump-analyze video.mp4 \
+  --smoothing-window 7 \
+  --velocity-threshold 0.01 \
+  --min-contact-frames 5
+
+# Full analysis with calibration and all outputs
+uv run kinemetry dropjump-analyze video.mp4 \
+  --output debug.mp4 \
+  --json-output metrics.json \
+  --drop-height 0.40 \
+  --smoothing-window 7
+
+# Regular jump (no calibration, uses corrected kinematic method)
+uv run kinemetry dropjump-analyze jump.mp4 \
+  --output debug.mp4 \
+  --json-output metrics.json
+```
+
+## MCP Server Configuration
+
+The repository includes MCP server configuration in `.mcp.json`:
+- **web-search**: DuckDuckGo search via @dannyboy2042/freebird-mcp
+- **sequential**: Sequential thinking via @smithery-ai/server-sequential-thinking
+- **context7**: Library documentation via @upstash/context7-mcp
+- **terraform**: Terraform registry via terraform-mcp-server
+- **basic-memory**: Note-taking for sr-quant-iac project
+
+Enabled via `.claude/settings.local.json` with `enableAllProjectMcpServers: true`.

kinemotion-0.1.0/LICENSE

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+MIT License
+
+Copyright (c) 2025 Drop-Jump Analysis Contributors
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.