kinase-library 0.1.0__tar.gz

kinase_library-0.1.0/LICENSE

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kinase_library-0.1.0/PKG-INFO

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+Metadata-Version: 2.1
+Name: kinase-library
+Version: 0.1.0
+Summary: The Kinase Library Project: a Global Atlas of the Human Protein Kinome
+Author-email: yaront <tmy2110@cumc.columbia.edu>, harinlee0803 <harin.lee@cellsignal.com>, sean-landry <sean.landry@cellsignal.com>
+License: Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported
+Project-URL: Homepage, https://github.com/TheKinaseLibrary/kinase-library
+Project-URL: Source, https://github.com/TheKinaseLibrary/kinase-library
+Keywords: kinase,phosphorylation,substrate,motif,substrate specificity,cell signaling,signaling,phosphoproteomics,kinase enrichment,signaling network,kinome,peptide library,phosphosite
+Requires-Python: <3.12,>=3.10
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: adjustText~=0.8
+Requires-Dist: Bio~=1.5.9
+Requires-Dist: gseapy
+Requires-Dist: matplotlib~=3.7.2
+Requires-Dist: natsort~=8.4.0
+Requires-Dist: numpy~=1.25.1
+Requires-Dist: pandas~=2.0.3
+Requires-Dist: pyarrow~=12.0.1
+Requires-Dist: scikit_learn~=1.3.0
+Requires-Dist: scipy~=1.11.1
+Requires-Dist: seaborn~=0.12.2
+Requires-Dist: statsmodels~=0.14.0
+Requires-Dist: tqdm~=4.65.0
+
+# kinase-library
+Python package for the Kinase Library project

kinase_library-0.1.0/README.md

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+# kinase-library
+Python package for the Kinase Library project

kinase_library-0.1.0/pyproject.toml

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+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "kinase-library"
+dynamic = ["version", "readme", "dependencies"]
+authors = [
+    { name = "yaront", email = "tmy2110@cumc.columbia.edu" },
+    { name = "harinlee0803", email = "harin.lee@cellsignal.com" },
+    { name = "sean-landry", email = "sean.landry@cellsignal.com" },
+]
+description = "The Kinase Library Project: a Global Atlas of the Human Protein Kinome"
+requires-python = ">=3.10, <3.12"
+keywords = [
+    "kinase",
+    "phosphorylation",
+    "substrate",
+    "motif",
+    "substrate specificity",
+    "cell signaling",
+    "signaling",
+    "phosphoproteomics",
+    "kinase enrichment",
+    "signaling network",
+    "kinome",
+    "peptide library",
+    "phosphosite",
+]
+license = { text = "Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported" }
+
+[project.urls]
+Homepage = "https://github.com/TheKinaseLibrary/kinase-library"
+Source = "https://github.com/TheKinaseLibrary/kinase-library"
+
+[tool.setuptools.dynamic]
+readme = { file = "README.md", content-type = "text/markdown" }
+version = { attr = "kinase_library.utils._global_vars.__version__" }
+dependencies = { file = "src/requirements.txt" }
+
+[tool.setuptools.packages.find]
+where = ["src"]
+include = ["kinase_library*"]
+exclude = ["tests"]
+
+[tool.setuptools.package-data]
+"kinase_library.databases" = ["**/*.*"]
+
+[tool.pytest.ini_options]
+addopts = """
+--cov-report term-missing \
+--cov src/kinase_library -ra"""

kinase_library-0.1.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

kinase_library-0.1.0/src/kinase_library/__init__.py

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+"""
+##############################
+# The Kinase Library Package #
+##############################
+"""
+
+from .objects.core import *
+from .objects.phosphoproteomics import *
+from .objects.differential_expression import *
+
+from .utils import _global_vars
+from .utils.utils import *
+
+from .modules.data import *
+from .modules.enrichment import *
+
+#%% Loading scored phosphoproteome one time per session
+
+_global_vars.all_scored_phosprot = ScoredPhosphoProteome(phosprot_name=_global_vars.phosprot_name, phosprot_path=_global_vars.phosprot_path)