kiba-core 0.5.3.dev87__tar.gz → 0.5.3.dev89__tar.gz

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/CHANGELOG.md

@@ -8,6 +8,9 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 ## [Unreleased]
 
 ### Added
+- [MINOR] Added `Database.commit_context_connection` to commit the context connection's writes so far; anything run on it afterwards is committed when the context connection ends
+- [PATCH] Updated `DatabaseConnectionMiddleware` to commit before the response starts, so a client can't get the response and make its next request before the request's writes are visible (writes made while streaming are still committed when the request ends)
+- [PATCH] Fixed `json_route` and `streaming_json_route` leaving the temporary files of multipart uploads open
 - [MINOR] Updated `json_route` and `streaming_json_route` (and so `route`) to accept `multipart/form-data` bodies: form fields are used like JSON body fields and uploaded files are passed as `core.api.uploaded_file.UploadedFile` (`filename`, `contentType`, `content`), so request models can declare `file: UploadedFile`. A field given more than once raises `BadRequestException`. The `core-api` extra now installs `python-multipart`
 - [MAJOR] Added abstract `MessageQueue.release_message` to hand a claimed message back to be claimed again straight away without using an attempt (`SqlMessageQueue` and `CosmosMessageQueue` keep `postCount`; `SqsMessageQueue` and `AqsMessageQueue` make the message visible again, though SQS still counts the next receive towards its redrive policy)
 - [MAJOR] Added abstract `MessageQueue.delete_expired_messages`: `SqlMessageQueue` deletes `succeeded` and `deduplicated` messages older than `retentionSeconds` (the other queues remove messages on completion and return 0). `SqlMessageQueue.get_message_count` no longer deletes them and its `shouldSkipRemovingNonRetained` parameter is removed

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: kiba-core
-Version: 0.5.3.dev87
+Version: 0.5.3.dev89
 Summary: Kiba Labs' python utilities
 Project-URL: repository, https://github.com/kibalabs/core-py
 Requires-Python: <4,>=3.12
@@ -9,12 +9,12 @@ Requires-Dist: aiofiles>=25.1.0
 Requires-Dist: pydantic>=2.14.1
 Requires-Dist: orjson>=3.13.0
 Provides-Extra: api
-Requires-Dist: fastapi>=0.143.0; extra == "api"
+Requires-Dist: fastapi>=0.146.0; extra == "api"
 Requires-Dist: uvicorn[standard]>=0.54.0; extra == "api"
 Provides-Extra: core-api
-Requires-Dist: starlette>=1.7.0; extra == "core-api"
+Requires-Dist: starlette>=1.9.0; extra == "core-api"
 Requires-Dist: uvicorn[standard]>=0.54.0; extra == "core-api"
-Requires-Dist: python-multipart>=0.0.29; extra == "core-api"
+Requires-Dist: python-multipart>=0.0.32; extra == "core-api"
 Provides-Extra: storage
 Requires-Dist: aiobotocore>=3.9.2; extra == "storage"
 Provides-Extra: queues
@@ -26,13 +26,13 @@ Requires-Dist: azure-storage-queue[aio]>=12.18.0; extra == "queue-aqs"
 Provides-Extra: queue-cosmos
 Requires-Dist: azure-cosmos>=4.17.1; extra == "queue-cosmos"
 Provides-Extra: database-psql
-Requires-Dist: sqlalchemy[asyncio]>=2.1.4; extra == "database-psql"
+Requires-Dist: sqlalchemy[asyncio]>=2.1.5; extra == "database-psql"
 Requires-Dist: asyncpg>=0.32.0; extra == "database-psql"
 Provides-Extra: database-sqlite
-Requires-Dist: sqlalchemy[asyncio]>=2.1.4; extra == "database-sqlite"
+Requires-Dist: sqlalchemy[asyncio]>=2.1.5; extra == "database-sqlite"
 Requires-Dist: aiosqlite>=0.22.1; extra == "database-sqlite"
 Provides-Extra: requester
-Requires-Dist: httpx2>=2.13.1; extra == "requester"
+Requires-Dist: httpx2>=2.14.0; extra == "requester"
 Provides-Extra: web3
 Requires-Dist: web3<8.0.0,>=7.16.0; extra == "web3"
 Provides-Extra: cron

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/core/api/middleware/database_connection_middleware.py

@@ -1,4 +1,5 @@
 from starlette.types import ASGIApp
+from starlette.types import Message
 from starlette.types import Receive
 from starlette.types import Scope
 from starlette.types import Send
@@ -18,4 +19,13 @@ class DatabaseConnectionMiddleware:
             await self.app(scope, receive, send)
             return
         async with self.database.create_context_connection():
-            await self.app(scope, receive, send)
+
+            # NOTE(krishan711): commit before the response starts, otherwise a client can get the response and make its
+            # next request before this request's writes are visible. Anything after this (e.g. while streaming) is
+            # committed when the context connection ends
+            async def send_after_commit(message: Message) -> None:
+                if message['type'] == 'http.response.start':
+                    await self.database.commit_context_connection()
+                await send(message)
+
+            await self.app(scope, receive, send_after_commit)

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/core/api/request_body.py

@@ -12,12 +12,13 @@ from core.util.typing_util import JsonObject
 
 async def read_request_body(request: Request) -> Mapping[str, object]:
     if request.headers.get('Content-Type', '').startswith('multipart/form-data'):
-        form = await request.form()
         body: dict[str, object] = {}
-        for key, value in form.multi_items():
-            if key in body:
-                raise BadRequestException(f'Invalid form body: {key} is given more than once')
-            body[key] = UploadedFile(filename=value.filename, contentType=value.content_type, content=await value.read()) if isinstance(value, UploadFile) else value
+        # NOTE(krishan711): the form is closed on exit so uploaded files' temporary files are closed (their content has been read by then)
+        async with request.form() as form:
+            for key, value in form.multi_items():
+                if key in body:
+                    raise BadRequestException(f'Invalid form body: {key} is given more than once')
+                body[key] = UploadedFile(filename=value.filename, contentType=value.content_type, content=await value.read()) if isinstance(value, UploadFile) else value
         return body
     bodyBytes = await request.body()
     if len(bodyBytes) == 0:

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/core/store/database.py

@@ -107,12 +107,12 @@ class Database:
             raise InternalServerErrorException(message='Engine has not been established. Please called collect() first.')
         if self._get_context_connection() is not None:
             raise InternalServerErrorException(message='Connection has already been established in this context.')
-        connection = None
         try:
-            async with self._engine.begin() as connection:
+            async with self._engine.connect() as connection:
                 self._connectionContext.set(connection)
                 try:
                     yield connection
+                    await self.commit_context_connection()
                 finally:
                     self._connectionContext.set(None)
         except sqlalchemy.exc.InterfaceError as exception:
@@ -122,6 +122,15 @@ class Database:
             await self.disconnect()
             await self.connect()
 
+    # NOTE(krishan711): commits what the context connection has done so far. Anything run on it afterwards is in a new
+    # transaction, which is committed when the context connection ends (or rolled back if it ends with an exception).
+    async def commit_context_connection(self) -> None:
+        connection = self._get_context_connection()
+        if not connection:
+            raise InternalServerErrorException(message='No connection found. Please call create_context_connection() for the context.')
+        await connection.commit()
+        self._connectionsWithWrites.discard(connection)
+
     # NOTE(krishan711): unlike create_context_connection this may be used inside an existing context connection.
     # Everything in the block runs on a new transaction that commits when the block exits, independent of the
     # outer transaction, which becomes the context connection again afterwards. It cannot see the outer

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/kiba_core.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: kiba-core
-Version: 0.5.3.dev87
+Version: 0.5.3.dev89
 Summary: Kiba Labs' python utilities
 Project-URL: repository, https://github.com/kibalabs/core-py
 Requires-Python: <4,>=3.12
@@ -9,12 +9,12 @@ Requires-Dist: aiofiles>=25.1.0
 Requires-Dist: pydantic>=2.14.1
 Requires-Dist: orjson>=3.13.0
 Provides-Extra: api
-Requires-Dist: fastapi>=0.143.0; extra == "api"
+Requires-Dist: fastapi>=0.146.0; extra == "api"
 Requires-Dist: uvicorn[standard]>=0.54.0; extra == "api"
 Provides-Extra: core-api
-Requires-Dist: starlette>=1.7.0; extra == "core-api"
+Requires-Dist: starlette>=1.9.0; extra == "core-api"
 Requires-Dist: uvicorn[standard]>=0.54.0; extra == "core-api"
-Requires-Dist: python-multipart>=0.0.29; extra == "core-api"
+Requires-Dist: python-multipart>=0.0.32; extra == "core-api"
 Provides-Extra: storage
 Requires-Dist: aiobotocore>=3.9.2; extra == "storage"
 Provides-Extra: queues
@@ -26,13 +26,13 @@ Requires-Dist: azure-storage-queue[aio]>=12.18.0; extra == "queue-aqs"
 Provides-Extra: queue-cosmos
 Requires-Dist: azure-cosmos>=4.17.1; extra == "queue-cosmos"
 Provides-Extra: database-psql
-Requires-Dist: sqlalchemy[asyncio]>=2.1.4; extra == "database-psql"
+Requires-Dist: sqlalchemy[asyncio]>=2.1.5; extra == "database-psql"
 Requires-Dist: asyncpg>=0.32.0; extra == "database-psql"
 Provides-Extra: database-sqlite
-Requires-Dist: sqlalchemy[asyncio]>=2.1.4; extra == "database-sqlite"
+Requires-Dist: sqlalchemy[asyncio]>=2.1.5; extra == "database-sqlite"
 Requires-Dist: aiosqlite>=0.22.1; extra == "database-sqlite"
 Provides-Extra: requester
-Requires-Dist: httpx2>=2.13.1; extra == "requester"
+Requires-Dist: httpx2>=2.14.0; extra == "requester"
 Provides-Extra: web3
 Requires-Dist: web3<8.0.0,>=7.16.0; extra == "web3"
 Provides-Extra: cron

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/kiba_core.egg-info/SOURCES.txt

@@ -106,6 +106,7 @@ tests/test_exceptions.py
 tests/test_logging.py
 tests/api/test_api_response.py
 tests/api/test_authorizer.py
+tests/api/test_database_connection_middleware.py
 tests/api/test_exception_handling_middleware.py
 tests/api/test_json_route.py
 tests/api/test_openapi.py

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/kiba_core.egg-info/requires.txt

@@ -3,23 +3,23 @@ pydantic>=2.14.1
 orjson>=3.13.0
 
 [api]
-fastapi>=0.143.0
+fastapi>=0.146.0
 uvicorn[standard]>=0.54.0
 
 [core-api]
-starlette>=1.7.0
+starlette>=1.9.0
 uvicorn[standard]>=0.54.0
-python-multipart>=0.0.29
+python-multipart>=0.0.32
 
 [cron]
 apscheduler<4,>=3.11.3
 
 [database-psql]
-sqlalchemy[asyncio]>=2.1.4
+sqlalchemy[asyncio]>=2.1.5
 asyncpg>=0.32.0
 
 [database-sqlite]
-sqlalchemy[asyncio]>=2.1.4
+sqlalchemy[asyncio]>=2.1.5
 aiosqlite>=0.22.1
 
 [queue-aqs]
@@ -35,7 +35,7 @@ aiobotocore>=3.9.2
 aiobotocore>=3.9.2
 
 [requester]
-httpx2>=2.13.1
+httpx2>=2.14.0
 
 [storage]
 aiobotocore>=3.9.2

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "kiba-core"
-version = "0.5.3.dev87"
+version = "0.5.3.dev89"
 description = "Kiba Labs' python utilities"
 readme = "README.md"
 requires-python = ">=3.12, <4"
@@ -12,13 +12,13 @@ dependencies = [
 
 [project.optional-dependencies]
 api = [
-    "fastapi>=0.143.0",
+    "fastapi>=0.146.0",
     "uvicorn[standard]>=0.54.0",
 ]
 core-api = [
-    "starlette>=1.7.0",
+    "starlette>=1.9.0",
     "uvicorn[standard]>=0.54.0",
-    "python-multipart>=0.0.29",
+    "python-multipart>=0.0.32",
 ]
 storage = [
     "aiobotocore>=3.9.2",
@@ -37,15 +37,15 @@ queue-cosmos = [
     "azure-cosmos>=4.17.1",
 ]
 database-psql = [
-    "sqlalchemy[asyncio]>=2.1.4",
+    "sqlalchemy[asyncio]>=2.1.5",
     "asyncpg>=0.32.0",
 ]
 database-sqlite = [
-    "sqlalchemy[asyncio]>=2.1.4",
+    "sqlalchemy[asyncio]>=2.1.5",
     "aiosqlite>=0.22.1",
 ]
 requester = [
-    "httpx2>=2.13.1",
+    "httpx2>=2.14.0",
 ]
 web3 = [
     "web3>=7.16.0,<8.0.0",
@@ -60,7 +60,7 @@ types = [
 
 [dependency-groups]
 dev = [
-    "kiba-build==0.1.11.dev19",
+    "kiba-build==0.1.11.dev20",
 ]
 
 [project.urls]

kiba_core-0.5.3.dev89/tests/api/test_database_connection_middleware.py

@@ -0,0 +1,81 @@
+import pytest
+import pytest_asyncio
+import sqlalchemy
+from sqlalchemy import Column
+from sqlalchemy import MetaData
+from sqlalchemy import Table
+from sqlalchemy import insert
+from sqlalchemy import select
+
+from core.api.middleware.database_connection_middleware import DatabaseConnectionMiddleware
+from core.store.database import Database
+
+metadata = MetaData()
+records = Table('records', metadata, Column('name', sqlalchemy.Text, primary_key=True))
+
+
+@pytest_asyncio.fixture
+async def database(tmp_path):
+    database = Database(connectionString=Database.create_sqlite_connection_string(str(tmp_path / 'database.sqlite')))
+    await database.connect(poolSize=2)
+    async with database.create_transaction() as connection:
+        await connection.run_sync(metadata.create_all)
+    yield database
+    await database.disconnect()
+
+
+async def get_record_names(database: Database) -> list[str]:
+    async with database.create_transaction() as connection:
+        result = await database.execute(select(records.c.name).order_by(records.c.name), connection=connection)
+    return list(result.scalars().all())
+
+
+async def call_app(app, database: Database) -> list[tuple[str, list[str]]]:
+    sentMessages: list[tuple[str, list[str]]] = []
+
+    async def receive():
+        return {'type': 'http.request', 'body': b'', 'more_body': False}
+
+    async def send(message):
+        sentMessages.append((message['type'], await get_record_names(database=database)))
+
+    await DatabaseConnectionMiddleware(app=app, database=database)({'type': 'http', 'method': 'POST', 'path': '/'}, receive, send)
+    return sentMessages
+
+
+@pytest.mark.asyncio
+async def test_writes_are_committed_before_the_response_starts(database):
+    async def app(scope, receive, send):
+        await database.execute(insert(records).values(name='request'))
+        await send({'type': 'http.response.start', 'status': 200, 'headers': []})
+        await send({'type': 'http.response.body', 'body': b'ok'})
+
+    sentMessages = await call_app(app=app, database=database)
+
+    assert sentMessages == [('http.response.start', ['request']), ('http.response.body', ['request'])]
+
+
+@pytest.mark.asyncio
+async def test_writes_while_streaming_are_committed_when_the_request_ends(database):
+    async def app(scope, receive, send):
+        await database.execute(insert(records).values(name='before'))
+        await send({'type': 'http.response.start', 'status': 200, 'headers': []})
+        await database.execute(insert(records).values(name='streaming'))
+        await send({'type': 'http.response.body', 'body': b'ok'})
+
+    sentMessages = await call_app(app=app, database=database)
+
+    assert sentMessages == [('http.response.start', ['before']), ('http.response.body', ['before'])]
+    assert await get_record_names(database=database) == ['before', 'streaming']
+
+
+@pytest.mark.asyncio
+async def test_writes_are_rolled_back_when_the_request_fails_before_responding(database):
+    async def app(scope, receive, send):
+        await database.execute(insert(records).values(name='request'))
+        raise ValueError('failed')
+
+    with pytest.raises(ValueError, match='failed'):
+        await call_app(app=app, database=database)
+
+    assert await get_record_names(database=database) == []

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/tests/api/test_json_route.py

@@ -1,6 +1,7 @@
 import pytest
 from starlette.applications import Starlette
 from starlette.routing import Route
+from starlette.datastructures import UploadFile
 from starlette.testclient import TestClient
 from pydantic import BaseModel
 
@@ -189,3 +190,21 @@ def test_json_route_with_multipart_body_rejects_repeated_fields(client):
     )
     assert response.status_code == 400
     assert "file is given more than once" in response.json().get("message", "")
+
+
+def test_json_route_with_multipart_body_closes_uploaded_files(client, monkeypatch):
+    closedFilenames = []
+    originalClose = UploadFile.close
+
+    async def close(self):
+        closedFilenames.append(self.filename)
+        await originalClose(self)
+
+    monkeypatch.setattr(UploadFile, "close", close)
+    response = client.post(
+        "/upload",
+        files={"file": ("scan.dcm", b"file-content", "application/dicom")},
+        data={"age": "41"},
+    )
+    assert response.status_code == 200
+    assert closedFilenames == ["scan.dcm"]

{kiba_core-0.5.3.dev87 → kiba_core-0.5.3.dev89}/tests/test_database.py

@@ -229,3 +229,58 @@ async def test_isolated_context_connection_raises_on_uncommitted_outer_writes_wh
             async with database.create_isolated_context_connection():
                 pass
     await database.disconnect()
+
+
+@pytest.mark.asyncio
+async def test_commit_context_connection_makes_writes_visible_before_the_context_ends(database):
+    metadata = MetaData()
+    records = Table('records', metadata, Column('name', sqlalchemy.Text, primary_key=True))
+    await database.connect(poolSize=2)
+    async with database.create_transaction() as connection:
+        await connection.run_sync(metadata.create_all)
+
+    with pytest.raises(ValueError, match='rollback'):
+        async with database.create_context_connection():
+            await database.execute(insert(records).values(name='committed'))
+            await database.commit_context_connection()
+            async with database.create_transaction() as connection:
+                result = await database.execute(select(records.c.name), connection=connection)
+            assert result.scalars().all() == ['committed']
+            await database.execute(insert(records).values(name='rolledback'))
+            raise ValueError('rollback')
+
+    async with database.create_transaction() as connection:
+        result = await database.execute(select(records.c.name), connection=connection)
+    assert result.scalars().all() == ['committed']
+    await database.disconnect()
+
+
+@pytest.mark.asyncio
+async def test_writes_after_commit_context_connection_are_committed_when_the_context_ends(database, caplog):
+    metadata = MetaData()
+    records = Table('records', metadata, Column('name', sqlalchemy.Text, primary_key=True))
+    await database.connect(poolSize=2)
+    async with database.create_transaction() as connection:
+        await connection.run_sync(metadata.create_all)
+
+    with caplog.at_level(logging.ERROR):
+        async with database.create_context_connection():
+            await database.execute(insert(records).values(name='first'))
+            await database.commit_context_connection()
+            async with database.create_isolated_context_connection():
+                pass
+            await database.execute(insert(records).values(name='second'))
+    assert 'ISOLATED_CONNECTION_AFTER_UNCOMMITTED_WRITES' not in caplog.text
+
+    async with database.create_transaction() as connection:
+        result = await database.execute(select(records.c.name).order_by(records.c.name), connection=connection)
+    assert result.scalars().all() == ['first', 'second']
+    await database.disconnect()
+
+
+@pytest.mark.asyncio
+async def test_commit_context_connection_requires_a_context_connection(database):
+    await database.connect(poolSize=1)
+    with pytest.raises(InternalServerErrorException, match='No connection found'):
+        await database.commit_context_connection()
+    await database.disconnect()