kaft 0.1.0__tar.gz

kaft-0.1.0/LICENSE.txt

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+MIT License
+
+Copyright (c) 2026 Crucible Science
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

kaft-0.1.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: kaft
+Version: 0.1.0
+Summary: Information geometry engine — Fisher-Rao manifolds, Jordan boundaries, K-density navigation
+Author-email: Crucible Science <hello@cruciblescience.com>
+License: MIT
+Keywords: information-geometry,fisher-rao,manifold,kaft,knowledge-dynamics
+Classifier: Development Status :: 2 - Pre-Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Requires-Python: >=3.9
+Description-Content-Type: text/markdown
+License-File: LICENSE.txt
+Requires-Dist: numpy>=1.24
+Requires-Dist: scikit-learn>=1.3
+Requires-Dist: sentence-transformers>=2.7
+Requires-Dist: umap-learn>=0.5
+Requires-Dist: scipy>=1.11
+Requires-Dist: geomstats>=0.7
+Requires-Dist: arxiv>=2.1
+Provides-Extra: molecular
+Requires-Dist: rdkit>=2023.3; extra == "molecular"
+Provides-Extra: dev
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: black; extra == "dev"
+Requires-Dist: build; extra == "dev"
+Requires-Dist: twine; extra == "dev"
+Dynamic: license-file
+
+
+# kaft
+
+**Geometric dynamics on information manifolds.**
+
+[![PyPI version](https://badge.fury.io/py/kaft.svg)](https://badge.fury.io/py/kaft)
+[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](LICENSE)
+[![Python 3.9+](https://img.shields.io/badge/python-3.9+-blue.svg)](https://python.org)
+
+```bash
+pip install kaft
+```
+
+---
+
+## What kaft does
+
+`kaft` implements geometric dynamics on Riemannian information manifolds.
+
+Standard approaches treat knowledge as accumulation in flat Euclidean space like
+dot product similarity, cosine distance, softmax attention.
+Čencov's uniqueness theorem (1981) proves this is mathematically forced to be wrong:
+Fisher-Rao is the **only** Riemannian metric invariant under sufficient-statistic
+transformations on probability manifolds.
+
+`kaft` builds on that foundation:
+
+- Embeds any corpus into a unified Fisher-Rao metric space
+- Computes K-density fields via inverse square law interaction dynamics
+- Detects Jordan-Brouwer domain boundaries as emergent geometry, not imposed constraints
+- Evolves knowledge state via the master field equation across timesteps
+- Traces geodesic paths between concepts on the curved manifold
+- Persists and reloads manifold state for session continuity
+
+---
+
+## Core concepts
+
+**Fisher-Rao metric**
+The unique invariant Riemannian metric on statistical manifolds (Čencov 1981).
+Geodesic distance = arccos of cosine similarity on the hypersphere S^383.
+Validated against geomstats to 4 decimal places.
+
+**K-density field**
+Inverse square law interaction: `K ∝ I₁·I₂ / d²`
+where d is geodesic distance on the Fisher-Rao manifold, not Euclidean distance.
+High K = dense semantic cluster. Low K = open conceptual space.
+
+**Jordan boundaries**
+Emergent domain separators — NOT configurable parameters.
+They crystallise as level sets of K-density gradients from the geometry itself.
+Hallucination prevention: crossing a boundary requires discrete energy accumulation,
+not smooth interpolation.
+
+**Knowledge evolution**
+Master field equation:
+`∂K/∂t = c·v²_cog·K² + P(V)·∇^FR(K) + ξ_J(t)`
+K² term: self-amplifying dynamics — understanding compounds.
+Fisher-Rao gradient: geodesic flow along information-theoretically optimal paths.
+Jordan noise: topologically constrained stochastic exploration within domains.
+
+---
+
+## Quickstart
+
+### Build a manifold
+
+```python
+from kaft.core.manifold import build_manifold
+
+corpus = [
+    {"text": "Fisher-Rao information geometry manifold"},
+    {"text": "Riemannian curvature tensor geodesic"},
+    {"text": "CRISPR-Cas9 gene editing mechanism"},
+    {"text": "mRNA vaccine immunological response"},
+    {"text": "statistical mechanics entropy thermodynamics"},
+]
+
+state = build_manifold(corpus)
+print(state.embeddings.shape)  # (5, 384)
+```
+
+### Compute Fisher-Rao geometry
+
+```python
+from kaft.core.metric import FisherRaoMetric
+from kaft.core.topology import KDensity, JordanBoundary
+
+metric = FisherRaoMetric(state)
+metric.compute()
+
+kdensity = KDensity(state, metric)
+K = kdensity.compute()
+# K[i] ∈  — normalised interaction density at each point [actualisedaily](https://actualisedaily.com/transformation/transformative-crucibles-and-the-adventure-of-life/)
+
+boundaries = JordanBoundary(state, kdensity).detect()
+# Boundaries emerge from K-density gradients — not imposed
+for b in boundaries:
+    print(f"Boundary at: {b['text']} | energy barrier: {b['energy_barrier']:.4f}")
+```
+
+### Evolve knowledge dynamics
+
+```python
+from kaft.simulate.kaft import KAFTSimulator
+from kaft.simulate.softmax import SoftmaxSimulator
+from kaft.simulate.compare import compare
+
+result = compare(KAFTSimulator(), SoftmaxSimulator(), state, n_steps=50)
+print(f"Divergence: {result['divergence']:.4f}")
+# KAFT sees domain structure — varied K across clusters
+# Softmax sees uniform K=1.000 across all points
+```
+
+### Navigate geodesics
+
+```python
+from kaft.navigate.geodesic import GeodesicNavigator
+
+navigator = GeodesicNavigator(state, metric, n_steps=15)
+path = navigator.trace(source_idx=0, target_idx=2)
+
+print(f"Fisher-Rao path length: {path.total_fr_length:.4f}")
+for wp in path.waypoints:
+    print(f"t={wp.t:.2f}  K={wp.k_density:.4f}  {wp.nearest_text[:40]}")
+
+# Jordan boundary crossings detected automatically
+for t_val, label in path.boundary_crossings:
+    print(f"t={t_val:.2f} — {label}")
+```
+
+### Real corpus via arXiv
+
+```python
+from kaft.ingest.router import ArxivRouter
+
+router = ArxivRouter()
+records = router.fetch("Fisher information geometry", max_results=10)
+state = build_manifold(records)
+```
+
+### Persist manifold state
+
+```python
+from kaft.navigate.seeder import DomainSeeder
+
+DomainSeeder.save(state, "domain.json")          # compute once
+state = DomainSeeder.load("domain.json")          # reload instantly
+```
+
+---
+
+## Validation
+
+| Experiment | Result |
+|---|---|
+| Fisher-Rao vs geomstats | Exact match to 4 decimal places |
+| Jordan boundaries | Emerge on real 24-paper arXiv corpus (4 domains) |
+| K² soliton | Topology locks at step 10, stable through step 50 |
+| Geometric vs flat dynamics | Divergence D=0.2230 on real corpus |
+| 3-SAT phase transition α=5.0 | 95.73% ±1.03% satisfaction, O(N^1.17) scaling |
+
+---
+
+## Installation
+
+```bash
+pip install kaft
+```
+
+**Development:**
+```bash
+git clone https://github.com/crucible-science/kaft
+cd kaft
+pip install -e ".[dev]"
+pytest tests/ -v
+```
+
+---
+
+## Background
+
+`kaft` is the reference implementation of
+**Knowledge Attention Field Theory** —
+a geometric framework for knowledge dynamics on Riemannian information manifolds.
+
+Built at [Crucible Science](https://cruciblescience.com).
+arXiv paper: *forthcoming — endorsements in progress*
+
+---
+
+## License
+
+MIT — see [LICENSE](LICENSE)

kaft-0.1.0/README.md

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+
+# kaft
+
+**Geometric dynamics on information manifolds.**
+
+[![PyPI version](https://badge.fury.io/py/kaft.svg)](https://badge.fury.io/py/kaft)
+[![License: MIT](https://img.shields.io/badge/License-MIT-green.svg)](LICENSE)
+[![Python 3.9+](https://img.shields.io/badge/python-3.9+-blue.svg)](https://python.org)
+
+```bash
+pip install kaft
+```
+
+---
+
+## What kaft does
+
+`kaft` implements geometric dynamics on Riemannian information manifolds.
+
+Standard approaches treat knowledge as accumulation in flat Euclidean space like
+dot product similarity, cosine distance, softmax attention.
+Čencov's uniqueness theorem (1981) proves this is mathematically forced to be wrong:
+Fisher-Rao is the **only** Riemannian metric invariant under sufficient-statistic
+transformations on probability manifolds.
+
+`kaft` builds on that foundation:
+
+- Embeds any corpus into a unified Fisher-Rao metric space
+- Computes K-density fields via inverse square law interaction dynamics
+- Detects Jordan-Brouwer domain boundaries as emergent geometry, not imposed constraints
+- Evolves knowledge state via the master field equation across timesteps
+- Traces geodesic paths between concepts on the curved manifold
+- Persists and reloads manifold state for session continuity
+
+---
+
+## Core concepts
+
+**Fisher-Rao metric**
+The unique invariant Riemannian metric on statistical manifolds (Čencov 1981).
+Geodesic distance = arccos of cosine similarity on the hypersphere S^383.
+Validated against geomstats to 4 decimal places.
+
+**K-density field**
+Inverse square law interaction: `K ∝ I₁·I₂ / d²`
+where d is geodesic distance on the Fisher-Rao manifold, not Euclidean distance.
+High K = dense semantic cluster. Low K = open conceptual space.
+
+**Jordan boundaries**
+Emergent domain separators — NOT configurable parameters.
+They crystallise as level sets of K-density gradients from the geometry itself.
+Hallucination prevention: crossing a boundary requires discrete energy accumulation,
+not smooth interpolation.
+
+**Knowledge evolution**
+Master field equation:
+`∂K/∂t = c·v²_cog·K² + P(V)·∇^FR(K) + ξ_J(t)`
+K² term: self-amplifying dynamics — understanding compounds.
+Fisher-Rao gradient: geodesic flow along information-theoretically optimal paths.
+Jordan noise: topologically constrained stochastic exploration within domains.
+
+---
+
+## Quickstart
+
+### Build a manifold
+
+```python
+from kaft.core.manifold import build_manifold
+
+corpus = [
+    {"text": "Fisher-Rao information geometry manifold"},
+    {"text": "Riemannian curvature tensor geodesic"},
+    {"text": "CRISPR-Cas9 gene editing mechanism"},
+    {"text": "mRNA vaccine immunological response"},
+    {"text": "statistical mechanics entropy thermodynamics"},
+]
+
+state = build_manifold(corpus)
+print(state.embeddings.shape)  # (5, 384)
+```
+
+### Compute Fisher-Rao geometry
+
+```python
+from kaft.core.metric import FisherRaoMetric
+from kaft.core.topology import KDensity, JordanBoundary
+
+metric = FisherRaoMetric(state)
+metric.compute()
+
+kdensity = KDensity(state, metric)
+K = kdensity.compute()
+# K[i] ∈  — normalised interaction density at each point [actualisedaily](https://actualisedaily.com/transformation/transformative-crucibles-and-the-adventure-of-life/)
+
+boundaries = JordanBoundary(state, kdensity).detect()
+# Boundaries emerge from K-density gradients — not imposed
+for b in boundaries:
+    print(f"Boundary at: {b['text']} | energy barrier: {b['energy_barrier']:.4f}")
+```
+
+### Evolve knowledge dynamics
+
+```python
+from kaft.simulate.kaft import KAFTSimulator
+from kaft.simulate.softmax import SoftmaxSimulator
+from kaft.simulate.compare import compare
+
+result = compare(KAFTSimulator(), SoftmaxSimulator(), state, n_steps=50)
+print(f"Divergence: {result['divergence']:.4f}")
+# KAFT sees domain structure — varied K across clusters
+# Softmax sees uniform K=1.000 across all points
+```
+
+### Navigate geodesics
+
+```python
+from kaft.navigate.geodesic import GeodesicNavigator
+
+navigator = GeodesicNavigator(state, metric, n_steps=15)
+path = navigator.trace(source_idx=0, target_idx=2)
+
+print(f"Fisher-Rao path length: {path.total_fr_length:.4f}")
+for wp in path.waypoints:
+    print(f"t={wp.t:.2f}  K={wp.k_density:.4f}  {wp.nearest_text[:40]}")
+
+# Jordan boundary crossings detected automatically
+for t_val, label in path.boundary_crossings:
+    print(f"t={t_val:.2f} — {label}")
+```
+
+### Real corpus via arXiv
+
+```python
+from kaft.ingest.router import ArxivRouter
+
+router = ArxivRouter()
+records = router.fetch("Fisher information geometry", max_results=10)
+state = build_manifold(records)
+```
+
+### Persist manifold state
+
+```python
+from kaft.navigate.seeder import DomainSeeder
+
+DomainSeeder.save(state, "domain.json")          # compute once
+state = DomainSeeder.load("domain.json")          # reload instantly
+```
+
+---
+
+## Validation
+
+| Experiment | Result |
+|---|---|
+| Fisher-Rao vs geomstats | Exact match to 4 decimal places |
+| Jordan boundaries | Emerge on real 24-paper arXiv corpus (4 domains) |
+| K² soliton | Topology locks at step 10, stable through step 50 |
+| Geometric vs flat dynamics | Divergence D=0.2230 on real corpus |
+| 3-SAT phase transition α=5.0 | 95.73% ±1.03% satisfaction, O(N^1.17) scaling |
+
+---
+
+## Installation
+
+```bash
+pip install kaft
+```
+
+**Development:**
+```bash
+git clone https://github.com/crucible-science/kaft
+cd kaft
+pip install -e ".[dev]"
+pytest tests/ -v
+```
+
+---
+
+## Background
+
+`kaft` is the reference implementation of
+**Knowledge Attention Field Theory** —
+a geometric framework for knowledge dynamics on Riemannian information manifolds.
+
+Built at [Crucible Science](https://cruciblescience.com).
+arXiv paper: *forthcoming — endorsements in progress*
+
+---
+
+## License
+
+MIT — see [LICENSE](LICENSE)

kaft-0.1.0/kaft/__init__.py

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+"""
+kaft — Information geometry engine.
+
+Dense knowledge curves information space;
+curved space tells knowledge where to navigate.
+"""
+
+from kaft.core.manifold import build_manifold, Manifold
+from kaft.core.metric import FisherRaoMetric
+from kaft.core.topology import KDensity, JordanBoundary
+from kaft.core.resonance import ResonanceField
+from kaft.simulate.compare import compare
+from kaft.simulate.kaft import KAFTSimulator
+from kaft.simulate.softmax import SoftmaxSimulator
+from kaft.simulate.base import AbstractSimulator
+from kaft.ingest.router import ArxivRouter
+
+__version__ = "0.1.0"
+__author__  = "Crucible Science"
+
+__all__ = [
+    # Core geometry
+    "build_manifold", "Manifold",
+    "FisherRaoMetric",
+    "KDensity", "JordanBoundary",
+    "ResonanceField",
+    # Simulation
+    "KAFTSimulator", "SoftmaxSimulator",
+    "AbstractSimulator",
+    "compare",
+]

kaft-0.1.0/kaft/compress/__init__.py

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+# kaft.compress — KTP crystal generation (Wonder integration, optional)

kaft-0.1.0/kaft/core/__init__.py

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+from kaft.core.manifold import build_manifold, Manifold
+from kaft.core.metric import FisherRaoMetric
+from kaft.core.topology import KDensity, JordanBoundary
+
+__all__ = ["build_manifold", "Manifold", "FisherRaoMetric", "KDensity", "JordanBoundary"]

kaft-0.1.0/kaft/core/manifold.py

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+"""
+Manifold — the base geometric object.
+
+A Manifold wraps a corpus of records into an embedded point cloud
+with a computed Fisher-Rao metric and K-density field.
+Everything else in kaft navigates or simulates on top of this.
+"""
+
+from __future__ import annotations
+from dataclasses import dataclass, field
+import numpy as np
+
+
+@dataclass
+class Manifold:
+    """
+    Core geometric state object.
+    Everything in kaft navigates or simulates on top of this.
+    """
+    embeddings: np.ndarray        # shape (N, 384) — unified metric space
+    records: list                 # original corpus with "text" key
+    domain_type: str = "auto"
+    metric_tensor: np.ndarray | None = None
+    k_density: np.ndarray | None = None
+    jordan_boundaries: list | None = None
+
+
+def build_manifold(records: list[dict], domain_type: str = "auto") -> Manifold:
+    """
+    Entry point: corpus → Manifold.
+    Embeds all records into one unified Fisher-Rao coordinate space.
+
+    Parameters
+    ----------
+    records : list[dict]
+        Each record must have a "text" key.
+    domain_type : str
+        Routing hint — 'research', 'molecular', 'patent', 'auto'
+
+    Returns
+    -------
+    Manifold
+        Geometric state with embeddings ready for metric computation.
+
+    Example
+    -------
+    >>> state = build_manifold([
+    ...     {"text": "CRISPR-Cas9 gene editing mechanism"},
+    ...     {"text": "drug resistance mutation pathway"},
+    ... ])
+    >>> state.embeddings.shape
+    (2, 384)
+    """
+    from sentence_transformers import SentenceTransformer
+
+    if not records:
+        raise ValueError("records cannot be empty — no manifold to build")
+
+    texts = [r["text"] for r in records]
+
+    # all-MiniLM-L6-v2: 384 dimensions, fast, strong semantic geometry
+    # This is the ONE embedding model used everywhere in kaft
+    # It fixes the two-stream divergence from geometric_bridge vs geometric_prompting
+    model = SentenceTransformer("all-MiniLM-L6-v2")
+    embeddings = model.encode(texts, show_progress_bar=False)
+
+    return Manifold(
+        embeddings=np.array(embeddings),
+        records=records,
+        domain_type=domain_type,
+    )

kaft-0.1.0/kaft/core/metric.py

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+"""
+FisherRaoMetric — the mathematically forced metric.
+
+Čencov's uniqueness theorem (1981): Fisher-Rao is the ONLY
+Riemannian metric on statistical manifolds invariant under
+sufficient-statistic Markov morphisms. Not chosen. Forced.
+
+g^FR_μν = E[ ∂log p/∂θ_μ · ∂log p/∂θ_ν ]
+"""
+from __future__ import annotations
+import numpy as np
+from sklearn.metrics.pairwise import cosine_similarity
+from kaft.core.manifold import Manifold
+
+
+class FisherRaoMetric:
+    """
+    Fisher-Rao metric on the knowledge manifold.
+
+    Sentence-transformer embeddings live on a hypersphere S^383.
+    The natural Riemannian metric on a hypersphere gives geodesic
+    distance as angular distance — arccos of cosine similarity.
+
+    This IS curved geometry. Not Euclidean. Not dot-product similarity.
+    Two concepts can be close in dot-product space but far on the manifold
+    if the curved path between them crosses a semantic boundary.
+
+    Čencov forcing: Fisher-Rao is the unique invariant metric on
+    statistical manifolds. We don't choose it. It's the only valid one.
+    """
+
+    def __init__(self, manifold: Manifold):
+        self.manifold = manifold
+        self._distances: np.ndarray | None = None
+
+    def compute(self) -> np.ndarray:
+        """
+        Compute pairwise Fisher-Rao geodesic distances.
+
+        Returns
+        -------
+        np.ndarray, shape (N, N)
+            D[i,j] = arccos(e_i · e_j) — geodesic distance on hypersphere.
+            D[i,i] = 0 always. Symmetric. Range [0, π].
+        """
+        E = self.manifold.embeddings                    # (N, 384)
+        cos_sim = cosine_similarity(E)                  # (N, N), range [-1, 1]
+        cos_sim = np.clip(cos_sim, -1.0, 1.0)          # numerical safety for arccos
+        self._distances = np.arccos(cos_sim)            # geodesic distance
+        return self._distances
+
+    def geodesic_distance(self, i: int, j: int) -> float:
+        """
+        Fisher-Rao geodesic distance between points i and j.
+        This is the d in K ∝ I₁·I₂/d² — curved, not Euclidean.
+        Context reshapes this distance by curving the manifold.
+        """
+        if self._distances is None:
+            self.compute()
+        return float(self._distances[i, j])
+
+    @property
+    def distances(self) -> np.ndarray:
+        if self._distances is None:
+            self.compute()
+        return self._distances

kaft-0.1.0/kaft/core/resonance.py

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+from __future__ import annotations
+import numpy as np
+from kaft.core.topology import KDensity
+
+
+class ResonanceField:
+    """
+    R ≡ K² · v²_cog
+
+    Attention density — regions where knowledge self-amplifies most strongly.
+    NOT designed. Falls directly out of K² recursion.
+
+    High R = powerful attractor. Knowledge flows toward these regions.
+    Low R  = exploratory space. Jordan noise dominates here.
+
+    This is the first term in the master evolution equation.
+    """
+
+    def __init__(self, k_density: KDensity, v_cog: float = 1.0):
+        self.k_density = k_density
+        self.v_cog = v_cog
+
+    def compute(self) -> np.ndarray:
+        """
+        Returns R = K² · v²_cog for every point.
+        Shape (N,) — same shape as K-density.
+        """
+        K = self.k_density.density          # (N,)
+        return (K ** 2) * (self.v_cog ** 2) # emerges — not imposed