jupyter-analysis-tools 1.6.3__tar.gz → 1.7.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (55) hide show
  1. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/.copier-answers.yml +1 -1
  2. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/CHANGELOG.md +16 -0
  3. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/PKG-INFO +19 -3
  4. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/README.md +2 -2
  5. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/conf.py +1 -1
  6. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/__init__.py +1 -1
  7. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/datastore.py +11 -7
  8. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/PKG-INFO +19 -3
  9. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/.editorconfig +0 -0
  10. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/.pre-commit-config.yaml +0 -0
  11. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/AUTHORS.rst +0 -0
  12. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/CONTRIBUTING.rst +0 -0
  13. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/LICENSE +0 -0
  14. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/MANIFEST.in +0 -0
  15. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/ci/requirements.txt +0 -0
  16. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/_templates/class.rst +0 -0
  17. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/_templates/module.rst +0 -0
  18. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/authors.rst +0 -0
  19. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/changelog.rst +0 -0
  20. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/contributing.rst +0 -0
  21. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/index.rst +0 -0
  22. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/installation.rst +0 -0
  23. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/readme.rst +0 -0
  24. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/reference/index.rst +0 -0
  25. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/requirements.txt +0 -0
  26. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/spelling_wordlist.txt +0 -0
  27. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/usage.rst +0 -0
  28. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/pyproject.toml +0 -0
  29. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/setup.cfg +0 -0
  30. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/analysis.py +0 -0
  31. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/binning.py +0 -0
  32. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/datalocations.py +0 -0
  33. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/distrib.py +0 -0
  34. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/git.py +0 -0
  35. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/plotting.py +0 -0
  36. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/readdata.py +0 -0
  37. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/ssfz2json.py +0 -0
  38. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/ssfz_compare.py +0 -0
  39. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/utils.py +0 -0
  40. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/widgets.py +0 -0
  41. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/SOURCES.txt +0 -0
  42. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/dependency_links.txt +0 -0
  43. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/entry_points.txt +0 -0
  44. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/requires.txt +0 -0
  45. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/top_level.txt +0 -0
  46. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/templates/CHANGELOG.md.j2 +0 -0
  47. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/testdata/2015-03-20-Silica.ssf.json +0 -0
  48. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/testdata/2015-03-20-Silica.ssfz +0 -0
  49. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/testdata/S2842 water.json +0 -0
  50. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/testdata/S2842 water.pdh +0 -0
  51. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/testdata/S2843[9].pdh +0 -0
  52. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/tests/readdata.py +0 -0
  53. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/tests/requirements.txt +0 -0
  54. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/tests/utils.py +0 -0
  55. {jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/tox.ini +0 -0
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/.copier-answers.yml RENAMED
@@ -22,4 +22,4 @@ repo_main_branch: main
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  repo_name: jupyter-analysis-tools
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  repo_userorg: BAMresearch
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  sphinx_theme: furo
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- version: 1.6.3
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+ version: 1.7.1
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/CHANGELOG.md RENAMED
@@ -1,5 +1,21 @@
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  # CHANGELOG
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+ ## v1.7.1 (2025-12-11)
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+
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+ ### Bug fixes
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+
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+ * **DataStore.createObject(**: attempt to create new project/collection only if object was not found; save it finally as well ([`95fa9e0`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/95fa9e042a26b423936caac64d3e8b115790e888))
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+
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+ ## v1.7.0 (2025-12-11)
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+
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+ ### Code style
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+
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+ * **DataStore**: line length ([`8741be2`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/8741be28e86990ec18ec946795f2a6b643dcaac6))
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+
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+ ### Enh
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+
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+ * **DataStore.init**: remember token and forward how long it should be valid ([`385ecf8`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/385ecf8137bbce46f7ed5266de3596b415e4576c))
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+
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  ## v1.6.3 (2025-12-04)
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  ### Bug fixes
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: jupyter-analysis-tools
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- Version: 1.6.3
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+ Version: 1.7.1
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  Summary: Yet another Python library with helpers and utilities for data analysis and processing.
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  Author-email: Ingo Breßler <ingo.bressler@bam.de>, "Brian R. Pauw" <brian.pauw@bam.de>
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  License-Expression: MIT
@@ -36,10 +36,10 @@ Requires-Dist: ipywidgets
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  Requires-Dist: pybis
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  Dynamic: license-file
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- # Jupyter Analysis Tools (v1.6.3)
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+ # Jupyter Analysis Tools (v1.7.1)
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  [![PyPI Package latest release](https://img.shields.io/pypi/v/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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- [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.6.3.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.6.3...main)
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+ [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.7.1.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.7.1...main)
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  [![License](https://img.shields.io/pypi/l/jupyter-analysis-tools.svg)](https://en.wikipedia.org/wiki/MIT_license)
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  [![Supported versions](https://img.shields.io/pypi/pyversions/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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  [![PyPI Wheel](https://img.shields.io/pypi/wheel/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools#files)
@@ -98,6 +98,22 @@ are installed:
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  # CHANGELOG
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+ ## v1.7.1 (2025-12-11)
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+
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+ ### Bug fixes
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+
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+ * **DataStore.createObject(**: attempt to create new project/collection only if object was not found; save it finally as well ([`95fa9e0`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/95fa9e042a26b423936caac64d3e8b115790e888))
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+
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+ ## v1.7.0 (2025-12-11)
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+
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+ ### Code style
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+
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+ * **DataStore**: line length ([`8741be2`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/8741be28e86990ec18ec946795f2a6b643dcaac6))
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+
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+ ### Enh
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+
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+ * **DataStore.init**: remember token and forward how long it should be valid ([`385ecf8`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/385ecf8137bbce46f7ed5266de3596b415e4576c))
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+
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  ## v1.6.3 (2025-12-04)
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  ### Bug fixes
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/README.md RENAMED
@@ -1,7 +1,7 @@
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- # Jupyter Analysis Tools (v1.6.3)
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+ # Jupyter Analysis Tools (v1.7.1)
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  [![PyPI Package latest release](https://img.shields.io/pypi/v/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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- [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.6.3.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.6.3...main)
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+ [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.7.1.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.7.1...main)
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  [![License](https://img.shields.io/pypi/l/jupyter-analysis-tools.svg)](https://en.wikipedia.org/wiki/MIT_license)
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  [![Supported versions](https://img.shields.io/pypi/pyversions/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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  [![PyPI Wheel](https://img.shields.io/pypi/wheel/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools#files)
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/docs/conf.py RENAMED
@@ -32,7 +32,7 @@ project = "Jupyter Analysis Tools"
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  year = "2018-2025"
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  author = "Ingo Breßler and Brian R. Pauw"
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  copyright = "{0}, {1}".format(year, author)
35
- version = "1.6.3"
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+ version = "1.7.1"
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  release = version
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  commit_id = None
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  try:
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/__init__.py RENAMED
@@ -1,7 +1,7 @@
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  # -*- coding: utf-8 -*-
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  # __init__.py
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- __version__ = "1.6.3"
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+ __version__ = "1.7.1"
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  from .binning import reBin
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  from .git import checkRepo, isNBstripoutActivated, isNBstripoutInstalled, isRepo
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools/datastore.py RENAMED
@@ -12,10 +12,11 @@ from pybis import Openbis
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  class DataStore:
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  url = None
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+ token = None
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  _availObj = None
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  _userspace = None
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- def __init__(self, url, username=None):
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+ def __init__(self, url, username=None, tokenValidTo=None):
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  self.url = url
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  self.username = username
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  if self.username is None:
@@ -30,7 +31,9 @@ class DataStore:
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  save_token=False,
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  )
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  # create the PAT with the given name, don't store it
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- self.ds.get_or_create_personal_access_token("test-session")
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+ self.token = self.ds.get_or_create_personal_access_token(
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+ "test-session", validTo=tokenValidTo
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+ )
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  @property
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  def userspace(self):
@@ -118,11 +121,9 @@ class DataStore:
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  objType: str = None,
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  props: dict = None,
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  ):
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- dsProject = self.createProject(projectName, space, spacePrefix=spacePrefix)
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- dsColl = None
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- if collectionName is None: # collectionName is required
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- return None
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- dsColl = self.createCollection(collectionName, dsProject, defaultObjType=objType)
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+ assert space and len(space), "space is required!"
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+ assert projectName and len(projectName), "projectName is required!"
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+ assert collectionName and len(collectionName), "collectionName is required!"
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  obj = self.ds.get_objects(type=objType, where={"$name": props["$name"]}).objects
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  if len(obj):
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  obj = obj[0]
@@ -132,10 +133,13 @@ class DataStore:
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  )
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  warnings.warn_explicit(msg, UserWarning, prefix, 0)
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  else: # does not exist yet
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+ dsProject = self.createProject(projectName, space, spacePrefix=spacePrefix)
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+ dsColl = self.createCollection(collectionName, dsProject, defaultObjType=objType)
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  objName = f" '{props['$name']}'" if len(props.get("$name", "")) else ""
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  print(f"Creating new {objType}{objName} in {dsColl.identifier}")
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  obj = self.ds.new_object(type=objType, props=props, collection=dsColl)
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  obj.set_props(props)
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+ obj.save()
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  return obj
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  def findObjects(self, *args, **kwargs):
{jupyter_analysis_tools-1.6.3 → jupyter_analysis_tools-1.7.1}/src/jupyter_analysis_tools.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: jupyter-analysis-tools
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- Version: 1.6.3
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+ Version: 1.7.1
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  Summary: Yet another Python library with helpers and utilities for data analysis and processing.
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  Author-email: Ingo Breßler <ingo.bressler@bam.de>, "Brian R. Pauw" <brian.pauw@bam.de>
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  License-Expression: MIT
@@ -36,10 +36,10 @@ Requires-Dist: ipywidgets
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  Requires-Dist: pybis
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  Dynamic: license-file
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- # Jupyter Analysis Tools (v1.6.3)
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+ # Jupyter Analysis Tools (v1.7.1)
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  [![PyPI Package latest release](https://img.shields.io/pypi/v/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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- [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.6.3.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.6.3...main)
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+ [![Commits since latest release](https://img.shields.io/github/commits-since/BAMresearch/jupyter-analysis-tools/v1.7.1.svg)](https://github.com/BAMresearch/jupyter-analysis-tools/compare/v1.7.1...main)
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  [![License](https://img.shields.io/pypi/l/jupyter-analysis-tools.svg)](https://en.wikipedia.org/wiki/MIT_license)
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  [![Supported versions](https://img.shields.io/pypi/pyversions/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools)
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  [![PyPI Wheel](https://img.shields.io/pypi/wheel/jupyter-analysis-tools.svg)](https://pypi.org/project/jupyter-analysis-tools#files)
@@ -98,6 +98,22 @@ are installed:
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  # CHANGELOG
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+ ## v1.7.1 (2025-12-11)
102
+
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+ ### Bug fixes
104
+
105
+ * **DataStore.createObject(**: attempt to create new project/collection only if object was not found; save it finally as well ([`95fa9e0`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/95fa9e042a26b423936caac64d3e8b115790e888))
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+
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+ ## v1.7.0 (2025-12-11)
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+
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+ ### Code style
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+
111
+ * **DataStore**: line length ([`8741be2`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/8741be28e86990ec18ec946795f2a6b643dcaac6))
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+
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+ ### Enh
114
+
115
+ * **DataStore.init**: remember token and forward how long it should be valid ([`385ecf8`](https://github.com/BAMresearch/jupyter-analysis-tools/commit/385ecf8137bbce46f7ed5266de3596b415e4576c))
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  ## v1.6.3 (2025-12-04)
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  ### Bug fixes