junifer 0.0.6.dev97__tar.gz → 0.0.6.dev102__tar.gz

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/ci-docs.yml

@@ -15,7 +15,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
     steps:
       - run: 'echo "No build required"'
       - name: Create mock coverage.xml file
@@ -40,7 +40,7 @@ jobs:
           echo '</package>' >> coverage.xml
           echo '</packages>' >> coverage.xml
           echo '</coverage>' >> coverage.xml
-        if: matrix.python-version == 3.11
+        if: matrix.python-version == 3.12
       - name: Upload mock coverage to Codecov
         uses: codecov/codecov-action@v4
         with:
@@ -48,4 +48,4 @@ jobs:
           # Allow coverage upload failure
           fail_ci_if_error: false
           flags: docs
-        if: success() && matrix.python-version == 3.11
+        if: success() && matrix.python-version == 3.12

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/ci.yml

@@ -16,7 +16,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ['3.8', '3.9', '3.10', '3.11', '3.12']
+        python-version: ['3.9', '3.10', '3.11', '3.12', '3.13']
 
     steps:
     - name: Set up system
@@ -65,13 +65,13 @@ jobs:
         curl -O https://afni.nimh.nih.gov/pub/dist/bin/misc/@update.afni.binaries
         sudo tcsh @update.afni.binaries -package linux_ubuntu_16_64 -bindir /afni
         echo "/afni" >> $GITHUB_PATH
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass AFNI installation failure
       continue-on-error: true
     - name: Check AFNI
       run: |
         echo "Using AFNI : $(afni --version)"
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass AFNI installation failure
       continue-on-error: true
     - name: Install ANTs
@@ -82,13 +82,13 @@ jobs:
         mv /opt/ants-2.5.2/bin/* /opt/ants-2.5.2
         rm ants.zip
         echo "/opt/ants-2.5.2" >> $GITHUB_PATH
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass ANTs installation failure
       continue-on-error: true
     - name: Check ANTs
       run: |
         echo "Using ANTs : $(antsRegistration --version)"
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass ANTs installation failure
       continue-on-error: true
     - name: Install FSL
@@ -98,13 +98,13 @@ jobs:
         echo "FSLOUTPUTTYPE=NIFTI_GZ" >> $GITHUB_ENV
         echo "FSLMULTIFILEQUIT=TRUE" >> $GITHUB_ENV
         echo "/opt/fsl/bin" >> $GITHUB_PATH
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass FSL installation failure
       continue-on-error: true
     - name: Check FSL
       run: |
         echo "Using FSL : $(flirt -version)"
-      if: matrix.python-version == 3.11
+      if: matrix.python-version == 3.12
       # Bypass FSL installation failure
       continue-on-error: true
     - name: Test with tox
@@ -116,4 +116,4 @@ jobs:
         token: ${{ secrets.CODECOV_TOKEN }}
         fail_ci_if_error: true
         flags: junifer
-      if: success() && matrix.python-version == 3.11
+      if: success() && matrix.python-version == 3.12

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/docs-preview.yml

@@ -24,10 +24,10 @@ jobs:
       with:
         fetch-depth: 0
         submodules: true
-    - name: Set up Python 3.11
+    - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.11'
+        python-version: "3.x"
     - name: Check for sudo
       shell: bash
       run: |

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/docs.yml

@@ -19,10 +19,10 @@ jobs:
         # require all of history to see all tagged versions' docs
         fetch-depth: 0
         submodules: true
-    - name: Set up Python 3.11
+    - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.11'
+        python-version: "3.x"
     - name: Check for sudo
       shell: bash
       run: |

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/lint.yml

@@ -12,7 +12,7 @@ jobs:
       - name: Install Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.x"
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/.github/workflows/pypi.yml

@@ -15,10 +15,10 @@ jobs:
       with:
         fetch-depth: 0
         submodules: true
-    - name: Set up Python 3.11
+    - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.11'
+        python-version: "3.x"
     - name: Install build
       run:
         pip install build

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev97
+Version: 0.0.6.dev102
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -19,27 +19,27 @@ Classifier: Topic :: Software Development
 Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE.md
 License-File: AUTHORS.rst
 Requires-Dist: click<8.2,>=8.1.3
-Requires-Dist: numpy<2.0.0,>=1.24.0
-Requires-Dist: scipy<=1.14.0,>=1.10.0
+Requires-Dist: numpy<2.0.0,>=1.26.0
+Requires-Dist: scipy<=1.15.0,>=1.10.0
 Requires-Dist: datalad<1.2.0,>=1.0.0
 Requires-Dist: pandas<2.3.0,>=2.0.0
-Requires-Dist: nibabel<5.3.0,>=5.2.0
+Requires-Dist: nibabel<5.4.0,>=5.2.0
 Requires-Dist: nilearn<=0.10.4,>=0.10.3
 Requires-Dist: sqlalchemy<=2.1.0,>=2.0.25
-Requires-Dist: ruamel.yaml<0.18,>=0.17
+Requires-Dist: ruamel.yaml<0.19,>=0.17
 Requires-Dist: h5py>=3.10
-Requires-Dist: httpx[http2]==0.26.0
-Requires-Dist: tqdm==4.66.1
+Requires-Dist: httpx[http2]<0.28.0,>=0.26.0
+Requires-Dist: tqdm<4.67.0,>=4.66.1
 Requires-Dist: templateflow>=23.0.0
 Requires-Dist: lapy<2.0.0,>=1.0.0
 Requires-Dist: lazy_loader==0.4
@@ -59,13 +59,13 @@ Requires-Dist: tox; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
 Provides-Extra: docs
 Requires-Dist: seaborn<0.14.0,>=0.13.0; extra == "docs"
-Requires-Dist: sphinx<7.4.0,>=7.3.0; extra == "docs"
-Requires-Dist: sphinx-gallery<0.17.0,>=0.15.0; extra == "docs"
-Requires-Dist: furo<2024.6.0,>=2024.4.27; extra == "docs"
-Requires-Dist: numpydoc<1.8.0,>=1.6.0; extra == "docs"
+Requires-Dist: sphinx<8.1.0,>=7.3.0; extra == "docs"
+Requires-Dist: sphinx-gallery<0.18.0,>=0.17.0; extra == "docs"
+Requires-Dist: furo<2024.9.0,>=2024.4.27; extra == "docs"
+Requires-Dist: numpydoc<1.9.0,>=1.6.0; extra == "docs"
 Requires-Dist: julearn==0.3.3; extra == "docs"
 Requires-Dist: sphinx-copybutton<0.5.3,>=0.5.1; extra == "docs"
-Requires-Dist: towncrier<23.12.0,>=23.10.0; extra == "docs"
+Requires-Dist: towncrier<24.7.0,>=23.10.0; extra == "docs"
 Requires-Dist: sphinxcontrib-mermaid<0.10,>=0.8.1; extra == "docs"
 Requires-Dist: sphinxcontrib-towncrier==0.4.0a0; extra == "docs"
 Requires-Dist: setuptools-scm>=8; extra == "docs"

junifer-0.0.6.dev102/docs/changes/newsfragments/372.misc

@@ -0,0 +1 @@
+Drop support for Python 3.8, add support for Python 3.13 and make Python 3.12 the base for code coverage by `Synchon Mandal`_

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev97'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev97')
+__version__ = version = '0.0.6.dev102'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev102')

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/junifer.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev97
+Version: 0.0.6.dev102
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -19,27 +19,27 @@ Classifier: Topic :: Software Development
 Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
 Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE.md
 License-File: AUTHORS.rst
 Requires-Dist: click<8.2,>=8.1.3
-Requires-Dist: numpy<2.0.0,>=1.24.0
-Requires-Dist: scipy<=1.14.0,>=1.10.0
+Requires-Dist: numpy<2.0.0,>=1.26.0
+Requires-Dist: scipy<=1.15.0,>=1.10.0
 Requires-Dist: datalad<1.2.0,>=1.0.0
 Requires-Dist: pandas<2.3.0,>=2.0.0
-Requires-Dist: nibabel<5.3.0,>=5.2.0
+Requires-Dist: nibabel<5.4.0,>=5.2.0
 Requires-Dist: nilearn<=0.10.4,>=0.10.3
 Requires-Dist: sqlalchemy<=2.1.0,>=2.0.25
-Requires-Dist: ruamel.yaml<0.18,>=0.17
+Requires-Dist: ruamel.yaml<0.19,>=0.17
 Requires-Dist: h5py>=3.10
-Requires-Dist: httpx[http2]==0.26.0
-Requires-Dist: tqdm==4.66.1
+Requires-Dist: httpx[http2]<0.28.0,>=0.26.0
+Requires-Dist: tqdm<4.67.0,>=4.66.1
 Requires-Dist: templateflow>=23.0.0
 Requires-Dist: lapy<2.0.0,>=1.0.0
 Requires-Dist: lazy_loader==0.4
@@ -59,13 +59,13 @@ Requires-Dist: tox; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
 Provides-Extra: docs
 Requires-Dist: seaborn<0.14.0,>=0.13.0; extra == "docs"
-Requires-Dist: sphinx<7.4.0,>=7.3.0; extra == "docs"
-Requires-Dist: sphinx-gallery<0.17.0,>=0.15.0; extra == "docs"
-Requires-Dist: furo<2024.6.0,>=2024.4.27; extra == "docs"
-Requires-Dist: numpydoc<1.8.0,>=1.6.0; extra == "docs"
+Requires-Dist: sphinx<8.1.0,>=7.3.0; extra == "docs"
+Requires-Dist: sphinx-gallery<0.18.0,>=0.17.0; extra == "docs"
+Requires-Dist: furo<2024.9.0,>=2024.4.27; extra == "docs"
+Requires-Dist: numpydoc<1.9.0,>=1.6.0; extra == "docs"
 Requires-Dist: julearn==0.3.3; extra == "docs"
 Requires-Dist: sphinx-copybutton<0.5.3,>=0.5.1; extra == "docs"
-Requires-Dist: towncrier<23.12.0,>=23.10.0; extra == "docs"
+Requires-Dist: towncrier<24.7.0,>=23.10.0; extra == "docs"
 Requires-Dist: sphinxcontrib-mermaid<0.10,>=0.8.1; extra == "docs"
 Requires-Dist: sphinxcontrib-towncrier==0.4.0a0; extra == "docs"
 Requires-Dist: setuptools-scm>=8; extra == "docs"

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/junifer.egg-info/SOURCES.txt

@@ -70,6 +70,7 @@ docs/changes/newsfragments/361.misc
 docs/changes/newsfragments/367.enh
 docs/changes/newsfragments/369.bugfix
 docs/changes/newsfragments/370.bugfix
+docs/changes/newsfragments/372.misc
 docs/extending/coordinates.rst
 docs/extending/datagrabber.rst
 docs/extending/dependencies.rst

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/junifer.egg-info/requires.txt

@@ -1,15 +1,15 @@
 click<8.2,>=8.1.3
-numpy<2.0.0,>=1.24.0
-scipy<=1.14.0,>=1.10.0
+numpy<2.0.0,>=1.26.0
+scipy<=1.15.0,>=1.10.0
 datalad<1.2.0,>=1.0.0
 pandas<2.3.0,>=2.0.0
-nibabel<5.3.0,>=5.2.0
+nibabel<5.4.0,>=5.2.0
 nilearn<=0.10.4,>=0.10.3
 sqlalchemy<=2.1.0,>=2.0.25
-ruamel.yaml<0.18,>=0.17
+ruamel.yaml<0.19,>=0.17
 h5py>=3.10
-httpx[http2]==0.26.0
-tqdm==4.66.1
+httpx[http2]<0.28.0,>=0.26.0
+tqdm<4.67.0,>=4.66.1
 templateflow>=23.0.0
 lapy<2.0.0,>=1.0.0
 lazy_loader==0.4
@@ -33,13 +33,13 @@ pre-commit
 
 [docs]
 seaborn<0.14.0,>=0.13.0
-sphinx<7.4.0,>=7.3.0
-sphinx-gallery<0.17.0,>=0.15.0
-furo<2024.6.0,>=2024.4.27
-numpydoc<1.8.0,>=1.6.0
+sphinx<8.1.0,>=7.3.0
+sphinx-gallery<0.18.0,>=0.17.0
+furo<2024.9.0,>=2024.4.27
+numpydoc<1.9.0,>=1.6.0
 julearn==0.3.3
 sphinx-copybutton<0.5.3,>=0.5.1
-towncrier<23.12.0,>=23.10.0
+towncrier<24.7.0,>=23.10.0
 sphinxcontrib-mermaid<0.10,>=0.8.1
 sphinxcontrib-towncrier==0.4.0a0
 setuptools-scm>=8

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/pyproject.toml

@@ -29,25 +29,25 @@ classifiers = [
     "Topic :: Scientific/Engineering",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Operating System :: OS Independent",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
     "click>=8.1.3,<8.2",
-    "numpy>=1.24.0,<2.0.0",
-    "scipy>=1.10.0,<=1.14.0",
+    "numpy>=1.26.0,<2.0.0",
+    "scipy>=1.10.0,<=1.15.0",
     "datalad>=1.0.0,<1.2.0",
     "pandas>=2.0.0,<2.3.0",
-    "nibabel>=5.2.0,<5.3.0",
+    "nibabel>=5.2.0,<5.4.0",
     "nilearn>=0.10.3,<=0.10.4",
     "sqlalchemy>=2.0.25,<=2.1.0",
-    "ruamel.yaml>=0.17,<0.18",
+    "ruamel.yaml>=0.17,<0.19",
     "h5py>=3.10",
-    "httpx[http2]==0.26.0",
-    "tqdm==4.66.1",
+    "httpx[http2]>=0.26.0,<0.28.0",
+    "tqdm>=4.66.1,<4.67.0",
     "templateflow>=23.0.0",
     "lapy>=1.0.0,<2.0.0",
     "lazy_loader==0.4",
@@ -78,13 +78,13 @@ neurokit2 = ["neurokit2>=0.1.7"]
 dev = ["tox", "pre-commit"]
 docs = [
     "seaborn>=0.13.0,<0.14.0",
-    "sphinx>=7.3.0,<7.4.0",
-    "sphinx-gallery>=0.15.0,<0.17.0",
-    "furo>=2024.4.27,<2024.6.0",
-    "numpydoc>=1.6.0,<1.8.0",
+    "sphinx>=7.3.0,<8.1.0",
+    "sphinx-gallery>=0.17.0,<0.18.0",
+    "furo>=2024.4.27,<2024.9.0",
+    "numpydoc>=1.6.0,<1.9.0",
     "julearn==0.3.3",
     "sphinx-copybutton>=0.5.1,<0.5.3",
-    "towncrier>=23.10.0,<23.12.0",
+    "towncrier>=23.10.0,<24.7.0",
     "sphinxcontrib-mermaid>=0.8.1,<0.10",
     "sphinxcontrib-towncrier==0.4.0a0",
     "setuptools-scm>=8",
@@ -109,7 +109,7 @@ write_to = "junifer/_version.py"
 
 [tool.black]
 line-length = 79
-target-version = ["py38", "py39", "py310", "py311", "py312"]
+target-version = ["py39", "py310", "py311", "py312", "py313"]
 extend-exclude = """
 (
   junifer/external/h5io

{junifer-0.0.6.dev97 → junifer-0.0.6.dev102}/tox.ini

@@ -1,14 +1,14 @@
 [tox]
-envlist = ruff, black, test, coverage, codespell, py3{8,9,10,11,12}
+envlist = ruff, black, test, coverage, codespell, py3{9,10,11,12,13}
 isolated_build = true
 
 [gh-actions]
 python =
-    3.8: py38
     3.9: py39
     3.10: py310
-    3.11: coverage
-    3.12: py312
+    3.11: py311
+    3.12: coverage
+    3.13: py313
 
 [testenv]
 skip_install = false