junifer 0.0.6.dev201__tar.gz → 0.0.6.dev205__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (476) hide show
  1. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/PKG-INFO +1 -1
  2. junifer-0.0.6.dev205/docs/changes/newsfragments/386.bugfix +1 -0
  3. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/_version.py +2 -2
  4. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/datagrabber/datalad_base.py +4 -4
  5. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/PKG-INFO +1 -1
  6. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/SOURCES.txt +1 -0
  7. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.dockerignore +0 -0
  8. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/bug-report.yml +0 -0
  9. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/config.yml +0 -0
  10. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/dataset-request.yml +0 -0
  11. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/documention-request.yml +0 -0
  12. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/feature-request.yml +0 -0
  13. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/ISSUE_TEMPLATE/marker-request.yml +0 -0
  14. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/dependabot.yml +0 -0
  15. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/pull_request_template.md +0 -0
  16. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/ci-docs.yml +0 -0
  17. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/ci.yml +0 -0
  18. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/docker-ci-publish.yml +0 -0
  19. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/docker-docs-publish.yml +0 -0
  20. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/docs-preview.yml +0 -0
  21. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/docs.yml +0 -0
  22. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/lint.yml +0 -0
  23. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.github/workflows/pypi.yml +0 -0
  24. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.gitignore +0 -0
  25. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.gitmodules +0 -0
  26. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/.pre-commit-config.yaml +0 -0
  27. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/AUTHORS.rst +0 -0
  28. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/Dockerfile-ci +0 -0
  29. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/Dockerfile-docs +0 -0
  30. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/LICENSE.md +0 -0
  31. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/README.md +0 -0
  32. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/codecov.yml +0 -0
  33. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/conda-env.yml +0 -0
  34. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/Makefile +0 -0
  35. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/_static/css/custom.css +0 -0
  36. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/_static/js/custom.js +0 -0
  37. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/_templates/versions.html +0 -0
  38. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/api.rst +0 -0
  39. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/cli.rst +0 -0
  40. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/configs.rst +0 -0
  41. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/data.rst +0 -0
  42. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/datagrabbers.rst +0 -0
  43. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/datareaders.rst +0 -0
  44. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/index.rst +0 -0
  45. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/markers.rst +0 -0
  46. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/nilearn.rst +0 -0
  47. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/onthefly.rst +0 -0
  48. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/pipeline.rst +0 -0
  49. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/preprocessing.rst +0 -0
  50. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/stats.rst +0 -0
  51. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/storage.rst +0 -0
  52. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/testing.rst +0 -0
  53. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/api/utils.rst +0 -0
  54. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/builtin.rst +0 -0
  55. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/contributors.inc +0 -0
  56. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/.gitignore +0 -0
  57. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/335.enh +0 -0
  58. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/354.feature +0 -0
  59. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/355.misc +0 -0
  60. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/356.bugfix +0 -0
  61. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/357.enh +0 -0
  62. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/358.doc +0 -0
  63. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/359.doc +0 -0
  64. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/360.bugfix +0 -0
  65. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/361.misc +0 -0
  66. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/362.feature +0 -0
  67. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/367.enh +0 -0
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  69. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/369.bugfix +0 -0
  70. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/370.bugfix +0 -0
  71. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/372.misc +0 -0
  72. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/373.misc +0 -0
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  78. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/387.change +0 -0
  79. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/changes/newsfragments/387.feature +0 -0
  80. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/conf.py +0 -0
  81. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/contribution.rst +0 -0
  82. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/coordinates.rst +0 -0
  83. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/datagrabber.rst +0 -0
  84. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/dependencies.rst +0 -0
  85. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/extension.rst +0 -0
  86. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/index.rst +0 -0
  87. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/marker.rst +0 -0
  88. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/masks.rst +0 -0
  89. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/parcellations.rst +0 -0
  90. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/extending/preprocessor.rst +0 -0
  91. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/faq.rst +0 -0
  92. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/help.rst +0 -0
  93. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/images/junifer_logo.png +0 -0
  94. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/index.rst +0 -0
  95. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/installation.rst +0 -0
  96. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/links.inc +0 -0
  97. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/maintaining.rst +0 -0
  98. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/redirect.html +0 -0
  99. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/starting.rst +0 -0
  100. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/data.rst +0 -0
  101. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/datagrabber.rst +0 -0
  102. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/datareader.rst +0 -0
  103. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/index.rst +0 -0
  104. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/marker.rst +0 -0
  105. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/pipeline.rst +0 -0
  106. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/preprocess.rst +0 -0
  107. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/understanding/storage.rst +0 -0
  108. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/using/codeless.rst +0 -0
  109. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/using/index.rst +0 -0
  110. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/using/masks.rst +0 -0
  111. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/using/queueing.rst +0 -0
  112. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/using/running.rst +0 -0
  113. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/docs/whats_new.rst +0 -0
  114. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/README.rst +0 -0
  115. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/norun_hcpfc_pearson.py +0 -0
  116. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/norun_ukbvm_gmd.py +0 -0
  117. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/run_compute_parcel_mean.py +0 -0
  118. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/run_datagrabber_bids_datalad.py +0 -0
  119. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/run_ets_rss_marker.py +0 -0
  120. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/run_junifer_julearn.py +0 -0
  121. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/run_run_gmd_mean.py +0 -0
  122. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/yamls/gmd_mean.yaml +0 -0
  123. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/yamls/gmd_mean_htcondor.yaml +0 -0
  124. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/yamls/partly_cloudy_agg_mean_tian.yml +0 -0
  125. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/examples/yamls/ukb_gmd_mean.yaml +0 -0
  126. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/ignore_words.txt +0 -0
  127. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/__init__.py +0 -0
  128. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/__init__.pyi +0 -0
  129. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/__init__.py +0 -0
  130. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/__init__.pyi +0 -0
  131. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/decorators.py +0 -0
  132. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/functions.py +0 -0
  133. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/py.typed +0 -0
  134. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/__init__.py +0 -0
  135. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/__init__.pyi +0 -0
  136. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/gnu_parallel_local_adapter.py +0 -0
  137. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/htcondor_adapter.py +0 -0
  138. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/py.typed +0 -0
  139. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/queue_context_adapter.py +0 -0
  140. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/tests/test_gnu_parallel_local_adapter.py +0 -0
  141. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/queue_context/tests/test_htcondor_adapter.py +0 -0
  142. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/afni/3dAFNItoNIFTI +0 -0
  143. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/afni/3dRSFC +0 -0
  144. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/afni/3dReHo +0 -0
  145. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/afni/afni +0 -0
  146. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/afni/run_afni_docker.sh +0 -0
  147. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/ants/ResampleImage +0 -0
  148. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/ants/antsApplyTransforms +0 -0
  149. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/ants/antsApplyTransformsToPoints +0 -0
  150. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/ants/run_ants_docker.sh +0 -0
  151. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/freesurfer/mri_binarize +0 -0
  152. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/freesurfer/mri_mc +0 -0
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  154. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/freesurfer/mris_convert +0 -0
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  156. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/res/fsl/applywarp +0 -0
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  165. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/api/tests/test_functions.py +0 -0
  166. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/__init__.py +0 -0
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  168. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/cli.py +0 -0
  169. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/parser.py +0 -0
  170. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/py.typed +0 -0
  171. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/data/gmd_mean.yaml +0 -0
  172. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/data/gmd_mean_htcondor.yaml +0 -0
  173. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/data/partly_cloudy_agg_mean_tian.yml +0 -0
  174. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/test_cli.py +0 -0
  175. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/test_cli_utils.py +0 -0
  176. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/tests/test_parser.py +0 -0
  177. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/cli/utils.py +0 -0
  178. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/configs/__init__.py +0 -0
  179. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/configs/juseless/__init__.py +0 -0
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  339. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/edge_functional_connectivity_parcels.py +0 -0
  340. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/edge_functional_connectivity_spheres.py +0 -0
  341. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/functional_connectivity_base.py +0 -0
  342. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/functional_connectivity_parcels.py +0 -0
  343. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/functional_connectivity_spheres.py +0 -0
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  345. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/tests/test_crossparcellation_functional_connectivity.py +0 -0
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  350. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py +0 -0
  351. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/parcel_aggregation.py +0 -0
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  359. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/reho/reho_parcels.py +0 -0
  360. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/reho/reho_spheres.py +0 -0
  361. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/reho/tests/test_reho_parcels.py +0 -0
  362. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/reho/tests/test_reho_spheres.py +0 -0
  363. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/sphere_aggregation.py +0 -0
  364. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/temporal_snr/__init__.py +0 -0
  365. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/temporal_snr/__init__.pyi +0 -0
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  373. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/tests/test_brainprint.py +0 -0
  374. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/tests/test_ets_rss.py +0 -0
  375. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/tests/test_marker_utils.py +0 -0
  376. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/tests/test_markers_base.py +0 -0
  377. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/tests/test_parcel_aggregation.py +0 -0
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  379. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/markers/utils.py +0 -0
  380. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/onthefly/__init__.py +0 -0
  381. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/onthefly/_brainprint.py +0 -0
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  383. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/onthefly/tests/test_read_transform.py +0 -0
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  387. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/pipeline_component_registry.py +0 -0
  388. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/pipeline_step_mixin.py +0 -0
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  394. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/tests/test_update_meta_mixin.py +0 -0
  395. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/tests/test_workdir_manager.py +0 -0
  396. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/update_meta_mixin.py +0 -0
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  398. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/pipeline/workdir_manager.py +0 -0
  399. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/__init__.py +0 -0
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  404. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/confounds/fmriprep_confound_remover.py +0 -0
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  406. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -0
  407. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/py.typed +0 -0
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  409. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/__init__.pyi +0 -0
  410. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/_afni_smoothing.py +0 -0
  411. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/_fsl_smoothing.py +0 -0
  412. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/_nilearn_smoothing.py +0 -0
  413. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/py.typed +0 -0
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  415. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/smoothing/tests/test_smoothing.py +0 -0
  416. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/tests/test_preprocess_base.py +0 -0
  417. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/__init__.py +0 -0
  418. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/__init__.pyi +0 -0
  419. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/_ants_warper.py +0 -0
  420. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/_fsl_warper.py +0 -0
  421. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/py.typed +0 -0
  422. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/space_warper.py +0 -0
  423. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/preprocess/warping/tests/test_space_warper.py +0 -0
  424. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/py.typed +0 -0
  425. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/stats.py +0 -0
  426. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/__init__.py +0 -0
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  428. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/base.py +0 -0
  429. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/hdf5.py +0 -0
  430. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/pandas_base.py +0 -0
  431. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/py.typed +0 -0
  432. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/sqlite.py +0 -0
  433. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/tests/test_hdf5.py +0 -0
  434. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/tests/test_pandas_base.py +0 -0
  435. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/tests/test_sqlite.py +0 -0
  436. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/tests/test_storage_base.py +0 -0
  437. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/tests/test_utils.py +0 -0
  438. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/storage/utils.py +0 -0
  439. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/__init__.py +0 -0
  440. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/__init__.pyi +0 -0
  441. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv +0 -0
  442. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/datagrabbers.py +0 -0
  443. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/py.typed +0 -0
  444. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/registry.py +0 -0
  445. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/tests/test_oasisvmbtesting_datagrabber.py +0 -0
  446. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/tests/test_partlycloudytesting_datagrabber.py +0 -0
  447. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/tests/test_spmauditory_datagrabber.py +0 -0
  448. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/tests/test_testing_registry.py +0 -0
  449. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/testing/utils.py +0 -0
  450. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/tests/test_main.py +0 -0
  451. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/tests/test_stats.py +0 -0
  452. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/__init__.py +0 -0
  453. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/__init__.pyi +0 -0
  454. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/_yaml.py +0 -0
  455. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/fs.py +0 -0
  456. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/helpers.py +0 -0
  457. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/logging.py +0 -0
  458. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/py.typed +0 -0
  459. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/tests/test_fs.py +0 -0
  460. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/tests/test_helpers.py +0 -0
  461. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/utils/tests/test_logging.py +0 -0
  462. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/dependency_links.txt +0 -0
  463. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/entry_points.txt +0 -0
  464. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/requires.txt +0 -0
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  467. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/setup.cfg +0 -0
  468. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/setup.py +0 -0
  469. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_aomic1000_example_dataset.py +0 -0
  470. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_aomicpiop1_example_dataset.py +0 -0
  471. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_aomicpiop2_example_dataset.py +0 -0
  472. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_bids_example_dataset.py +0 -0
  473. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_bids_example_dataset_sessions.py +0 -0
  474. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_dmcc13_benchmark_example_dataset.py +0 -0
  475. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tools/create_hcp1200_example_dataset.py +0 -0
  476. {junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/tox.ini +0 -0
{junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.6.dev201
3
+ Version: 0.0.6.dev205
4
4
  Summary: JUelich NeuroImaging FEature extractoR
5
5
  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
6
6
  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
junifer-0.0.6.dev205/docs/changes/newsfragments/386.bugfix ADDED
@@ -0,0 +1 @@
1
+ Use the :class:`junifer.pipeline.WorkDirManager` for temporary directories in the :class:`.DataladDataGrabber` by `Fede Raimondo`_
{junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/_version.py RENAMED
@@ -12,5 +12,5 @@ __version__: str
12
12
  __version_tuple__: VERSION_TUPLE
13
13
  version_tuple: VERSION_TUPLE
14
14
 
15
- __version__ = version = '0.0.6.dev201'
16
- __version_tuple__ = version_tuple = (0, 0, 6, 'dev201')
15
+ __version__ = version = '0.0.6.dev205'
16
+ __version_tuple__ = version_tuple = (0, 0, 6, 'dev205')
{junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer/datagrabber/datalad_base.py RENAMED
@@ -7,7 +7,6 @@
7
7
 
8
8
  import atexit
9
9
  import os
10
- import shutil
11
10
  import tempfile
12
11
  from pathlib import Path
13
12
  from typing import Dict, Optional, Tuple, Union
@@ -17,6 +16,7 @@ import datalad.api as dl
17
16
  from datalad.support.exceptions import IncompleteResultsError
18
17
  from datalad.support.gitrepo import GitRepo
19
18
 
19
+ from ..pipeline import WorkDirManager
20
20
  from ..utils import logger, raise_error, warn_with_log
21
21
  from .base import BaseDataGrabber
22
22
 
@@ -78,7 +78,8 @@ class DataladDataGrabber(BaseDataGrabber):
78
78
  if datadir is None:
79
79
  logger.info("`datadir` is None, creating a temporary directory")
80
80
  # Create temporary directory
81
- tmpdir = Path(tempfile.mkdtemp())
81
+ tmpdir = WorkDirManager().get_tempdir(prefix="datalad")
82
+ self._tmpdir = tmpdir
82
83
  datadir = tmpdir / "datadir"
83
84
  datadir.mkdir(parents=True, exist_ok=False)
84
85
  logger.info(f"`datadir` set to {datadir}")
@@ -104,7 +105,6 @@ class DataladDataGrabber(BaseDataGrabber):
104
105
  "Datalad locks set to "
105
106
  f"{datalad.cfg.get('datalad.locations.locks')}"
106
107
  )
107
- self._tmpdir = tmpdir
108
108
  atexit.register(self._rmtmpdir)
109
109
  # TODO: uri can be converted to a positional argument
110
110
  if uri is None:
@@ -129,7 +129,7 @@ class DataladDataGrabber(BaseDataGrabber):
129
129
  """Remove temporary directory if it exists."""
130
130
  if self._tmpdir.exists():
131
131
  logger.debug("Removing temporary directory")
132
- shutil.rmtree(self._tmpdir)
132
+ WorkDirManager().delete_tempdir(self._tmpdir)
133
133
 
134
134
  @property
135
135
  def datadir(self) -> Path:
{junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/junifer.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: junifer
3
- Version: 0.0.6.dev201
3
+ Version: 0.0.6.dev205
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  Summary: JUelich NeuroImaging FEature extractoR
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  Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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  Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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{junifer-0.0.6.dev201 → junifer-0.0.6.dev205}/README.md RENAMED
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